data_8PJK # _model_server_result.job_id k6tUSOm7Qw9ngFPvo5rDzQ _model_server_result.datetime_utc '2024-10-11 00:32:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pjk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 8PJK # _exptl.entry_id 8PJK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 153 _struct_conn.ptnr1_auth_asym_id R _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 109 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 231 _struct_conn.ptnr2_auth_asym_id R _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 187 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.03 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 8PJK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 CLR R 1 501 501 CLR CLR . F 5 CLR R 1 502 502 CLR CLR . G 6 ZL9 R 1 503 504 ZL9 ZL9 . H 7 T7M R 1 504 505 T7M T7M . I 8 HOH A 1 401 608 HOH HOH . I 8 HOH A 2 402 402 HOH HOH . J 8 HOH R 1 601 606 HOH HOH . J 8 HOH R 2 602 607 HOH HOH . J 8 HOH R 3 603 604 HOH HOH . J 8 HOH R 4 604 603 HOH HOH . J 8 HOH R 5 605 618 HOH HOH . J 8 HOH R 6 606 623 HOH HOH . J 8 HOH R 7 607 602 HOH HOH . J 8 HOH R 8 608 614 HOH HOH . J 8 HOH R 9 609 601 HOH HOH . J 8 HOH R 10 610 605 HOH HOH . J 8 HOH R 11 611 609 HOH HOH . J 8 HOH R 12 612 611 HOH HOH . J 8 HOH R 13 613 610 HOH HOH . J 8 HOH R 14 614 613 HOH HOH . J 8 HOH R 15 615 612 HOH HOH . J 8 HOH R 16 616 616 HOH HOH . J 8 HOH R 17 617 615 HOH HOH . J 8 HOH R 18 618 617 HOH HOH . J 8 HOH R 19 619 620 HOH HOH . J 8 HOH R 20 620 621 HOH HOH . J 8 HOH R 21 621 630 HOH HOH . J 8 HOH R 22 622 625 HOH HOH . J 8 HOH R 23 623 401 HOH HOH . J 8 HOH R 24 624 628 HOH HOH . J 8 HOH R 25 625 619 HOH HOH . J 8 HOH R 26 626 627 HOH HOH . J 8 HOH R 27 627 624 HOH HOH . J 8 HOH R 28 628 622 HOH HOH . J 8 HOH R 29 629 626 HOH HOH . J 8 HOH R 30 630 631 HOH HOH . J 8 HOH R 31 631 632 HOH HOH . J 8 HOH R 32 632 629 HOH HOH . J 8 HOH R 33 633 633 HOH HOH . J 8 HOH R 34 634 403 HOH HOH . J 8 HOH R 35 635 634 HOH HOH . J 8 HOH R 36 636 635 HOH HOH . J 8 HOH R 37 637 636 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . F 5 176.326 165.938 140.337 1 71.92 ? C1 CLR 502 R 1 HETATM 2 C C2 CLR . . . F 5 176.039 165.67 138.859 1 70.31 ? C2 CLR 502 R 1 HETATM 3 C C3 CLR . . . F 5 175.127 164.472 138.703 1 71.87 ? C3 CLR 502 R 1 HETATM 4 C C4 CLR . . . F 5 173.826 164.707 139.446 1 71.56 ? C4 CLR 502 R 1 HETATM 5 C C5 CLR . . . F 5 174.059 165.077 140.893 1 70.63 ? C5 CLR 502 R 1 HETATM 6 C C6 CLR . . . F 5 173.412 164.448 141.862 1 69.72 ? C6 CLR 502 R 1 HETATM 7 C C7 CLR . . . F 5 173.446 164.824 143.311 1 68.83 ? C7 CLR 502 R 1 HETATM 8 C C8 CLR . . . F 5 174.204 166.121 143.588 1 68.54 ? C8 CLR 502 R 1 HETATM 9 C C9 CLR . . . F 5 175.424 166.234 142.663 1 71.64 ? C9 CLR 502 R 1 HETATM 10 C C10 CLR . . . F 5 175.05 166.203 141.152 1 73.3 ? C10 CLR 502 R 1 HETATM 11 C C11 CLR . . . F 5 176.315 167.428 143.028 1 71.33 ? C11 CLR 502 R 1 HETATM 12 C C12 CLR . . . F 5 176.702 167.467 144.507 1 69.02 ? C12 CLR 502 R 1 HETATM 13 C C13 CLR . . . F 5 175.471 167.428 145.42 1 73.46 ? C13 CLR 502 R 1 HETATM 14 C C14 CLR . . . F 5 174.684 166.156 145.042 1 72.45 ? C14 CLR 502 R 1 HETATM 15 C C15 CLR . . . F 5 173.669 165.997 146.186 1 69.95 ? C15 CLR 502 R 1 HETATM 16 C C16 CLR . . . F 5 174.359 166.616 147.419 1 69.53 ? C16 CLR 502 R 1 HETATM 17 C C17 CLR . . . F 5 175.719 167.138 146.916 1 71.07 ? C17 CLR 502 R 1 HETATM 18 C C18 CLR . . . F 5 174.622 168.697 145.229 1 71.3 ? C18 CLR 502 R 1 HETATM 19 C C19 CLR . . . F 5 174.412 167.529 140.695 1 69.23 ? C19 CLR 502 R 1 HETATM 20 C C20 CLR . . . F 5 176.29 168.244 147.822 1 71.72 ? C20 CLR 502 R 1 HETATM 21 C C21 CLR . . . F 5 177.728 168.619 147.475 1 72 ? C21 CLR 502 R 1 HETATM 22 C C22 CLR . . . F 5 176.188 167.82 149.296 1 71.78 ? C22 CLR 502 R 1 HETATM 23 C C23 CLR . . . F 5 175.898 168.949 150.276 1 72.61 ? C23 CLR 502 R 1 HETATM 24 C C24 CLR . . . F 5 175.693 168.475 151.711 1 71.11 ? C24 CLR 502 R 1 HETATM 25 C C25 CLR . . . F 5 176.845 167.695 152.337 1 70.92 ? C25 CLR 502 R 1 HETATM 26 C C26 CLR . . . F 5 176.949 167.991 153.821 1 68.72 ? C26 CLR 502 R 1 HETATM 27 C C27 CLR . . . F 5 176.703 166.198 152.114 1 70.57 ? C27 CLR 502 R 1 HETATM 28 O O1 CLR . . . F 5 174.856 164.233 137.32 1 74.6 ? O1 CLR 502 R 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #