data_8PJP
#
_model_server_result.job_id            k8FjpE-kFZcdO8xtKH-RfA 
_model_server_result.datetime_utc      '2024-11-22 15:04:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pjp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    8PJP 
#
_exptl.entry_id    8PJP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              292.286 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{R})-~{N}-[(2~{R},3~{S},4~{S},5~{R},6~{R})-5-acetamido-2-methyl-4,6-bis(oxidanyl)oxan-3-yl]-2,3-bis(oxidanyl)propanamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PJP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PJP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 120 A CYS 120 1_555 A SG CYS 154 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 24 C CYS 24 1_555 B SG CYS 98 C CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A OG SER 63 A SER 63 1_555 D C2 WKE . A WKE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale2 A CB SER 69 A SER 69 1_555 C O4P G3P . A G3P 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? 
#
_chem_comp.formula           'C11 H20 N2 O7' 
_chem_comp.formula_weight    292.286 
_chem_comp.id                WKE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{R})-~{N}-[(2~{R},3~{S},4~{S},5~{R},6~{R})-5-acetamido-2-methyl-4,6-bis(oxidanyl)oxan-3-yl]-2,3-bis(oxidanyl)propanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 C10 WKE sing 392 n n 
O4 C9 WKE sing 393 n n 
C10 C9 WKE sing 394 n n 
C9 C8 WKE sing 395 n n 
N1 C8 WKE sing 396 n n 
N1 C7 WKE sing 397 n n 
C8 O3 WKE doub 398 n n 
C6 O6 WKE sing 399 n n 
C6 C7 WKE sing 400 n n 
C6 C3 WKE sing 401 n n 
O1 C4 WKE doub 402 n n 
N C4 WKE sing 403 n n 
N C3 WKE sing 404 n n 
C7 C1 WKE sing 405 n n 
C4 C5 WKE sing 406 n n 
C1 C WKE sing 407 n n 
C1 O WKE sing 408 n n 
C3 C2 WKE sing 409 n n 
C2 O WKE sing 410 n n 
C1 H1 WKE sing 411 n n 
C2 H2 WKE sing 412 n n 
C3 H4 WKE sing 413 n n 
C5 H5 WKE sing 414 n n 
C5 H6 WKE sing 415 n n 
C5 H7 WKE sing 416 n n 
C6 H8 WKE sing 417 n n 
C7 H9 WKE sing 418 n n 
C9 H10 WKE sing 419 n n 
C10 H11 WKE sing 420 n n 
C10 H12 WKE sing 421 n n 
N1 H13 WKE sing 422 n n 
O6 H14 WKE sing 423 n n 
O4 H15 WKE sing 424 n n 
O5 H16 WKE sing 425 n n 
N H17 WKE sing 426 n n 
C H18 WKE sing 427 n n 
C H19 WKE sing 428 n n 
C H20 WKE sing 429 n n 
C2 O2 WKE sing 430 n n 
O2 H3 WKE sing 431 n n 
#
_atom_sites.entry_id                     8PJP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 G3P A 1 201 162 G3P G3P . 
D 4 WKE A 1 202 163 WKE GAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 WKE . . . D 4 147.224 183.717 172.9 1 55.87 ? C1 WKE 202 A 1 
HETATM 2 C C2 WKE . . . D 4 149.444 184.609 172.717 1 59.59 ? C2 WKE 202 A 1 
HETATM 3 C C3 WKE . . . D 4 149.002 185.936 173.354 1 54.04 ? C3 WKE 202 A 1 
HETATM 4 C C4 WKE . . . D 4 150.526 187.743 173.975 1 58.58 ? C4 WKE 202 A 1 
HETATM 5 C C5 WKE . . . D 4 149.989 188.468 172.778 1 57.04 ? C5 WKE 202 A 1 
HETATM 6 C C6 WKE . . . D 4 147.773 185.741 174.231 1 55.31 ? C6 WKE 202 A 1 
HETATM 7 C C7 WKE . . . D 4 146.668 184.995 173.507 1 49.29 ? C7 WKE 202 A 1 
HETATM 8 C C8 WKE . . . D 4 144.516 185.452 174.523 1 61.38 ? C8 WKE 202 A 1 
HETATM 9 C C9 WKE . . . D 4 143.571 185.166 175.652 1 55.37 ? C9 WKE 202 A 1 
HETATM 10 C C10 WKE . . . D 4 142.823 183.869 175.381 1 57.85 ? C10 WKE 202 A 1 
HETATM 11 N N1 WKE . . . D 4 145.606 184.695 174.446 1 52.84 ? N1 WKE 202 A 1 
HETATM 12 O O1 WKE . . . D 4 151.395 188.221 174.684 1 59.21 ? O1 WKE 202 A 1 
HETATM 13 O O6 WKE . . . D 4 147.285 187.02 174.653 1 66.6 ? O6 WKE 202 A 1 
HETATM 14 O O3 WKE . . . D 4 144.272 186.342 173.726 1 68.15 ? O3 WKE 202 A 1 
HETATM 15 O O4 WKE . . . D 4 144.312 185.036 176.869 1 58.44 ? O4 WKE 202 A 1 
HETATM 16 O O5 WKE . . . D 4 141.9 183.625 176.448 1 58.59 ? O5 WKE 202 A 1 
HETATM 17 N N WKE . . . D 4 150.001 186.544 174.217 1 59.34 ? N WKE 202 A 1 
HETATM 18 C C WKE . . . D 4 146.145 183.001 172.099 1 59.3 ? C WKE 202 A 1 
HETATM 19 O O WKE . . . D 4 148.322 184.032 172.043 1 63.43 ? O WKE 202 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           19 
#