data_8PK7 # _model_server_result.job_id fynLND2CaiMBlZ7bdVymFA _model_server_result.datetime_utc '2025-03-04 14:04:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pk7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 8PK7 # _exptl.entry_id 8PK7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B 1 1 A,B 1 2 A,B 1 3 A,B 1 4 A,B 1 5 A,B 1 6 A,B 1 7 A,B 1 8 A,B 1 9 A,B 1 10 A,B 1 11 A,B 1 12 A,B 1 13 A,B 1 14 A,B 1 15 A,B 1 16 A,B 1 17 A,B 1 18 A,B 1 19 A,B 1 20 A,B 1 21 A,B 1 22 A,B 1 23 A,B 1 24 A,B 1 25 A,B 1 26 A,B 1 27 A,B 1 28 A,B 1 29 A,B 1 30 A,B 1 31 A,B 1 32 A,B 1 33 A,B 1 34 A,B 1 35 A,B 1 36 A,B 1 37 A,B 1 38 A,B 1 39 A,B 1 40 A,B 1 41 A,B 1 42 A,B 1 43 A,B 1 44 A,B 1 45 A,B 1 46 A,B 1 47 A,B 1 48 A,B 1 49 A,B 1 50 A,B 1 51 A,B 1 52 A,B 1 53 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.9621 -0.2727 0 0.2727 -0.9621 0 0 0 1 483.253 365.3154 -2.7821 3 'point symmetry operation' ? ? 0.8513 0.5247 0 -0.5247 0.8513 0 0 0 1 -81.3061 145.6286 -5.5636 4 'point symmetry operation' ? ? -0.6759 -0.737 0 0.737 -0.6759 0 0 0 1 521.7644 203.034 -8.3458 5 'point symmetry operation' ? ? 0.4493 0.8934 0 -0.8934 0.4493 0 0 0 1 -74.1037 312.2615 -11.1278 6 'point symmetry operation' ? ? -0.1887 -0.982 0 0.982 -0.1887 0 0 0 1 469.3939 44.6808 -13.91 7 'point symmetry operation' ? ? -0.0863 0.9963 0 -0.9963 -0.0863 0 0 0 1 19.4648 450.3319 -16.6921 8 'point symmetry operation' ? ? 0.3547 -0.935 0 0.935 0.3547 0 0 0 1 341.7198 -62.6402 -19.4742 9 'point symmetry operation' ? ? -0.5962 0.8028 0 -0.8028 -0.5962 0 0 0 1 171.5659 518.7689 -22.256 10 'point symmetry operation' ? ? 0.7926 -0.6098 0 0.6098 0.7926 0 0 0 1 176.7206 -87.0052 -25.038 11 'point symmetry operation' ? ? -0.9288 0.3706 0 -0.3706 -0.9288 0 0 0 1 336.9564 497.2155 -27.8195 12 'point symmetry operation' ? ? 0.9947 -0.1032 0 0.1032 0.9947 0 0 0 1 23.4768 -21.1665 -30.6019 13 'point symmetry operation' ? ? -0.9851 -0.1719 0 0.1719 -0.9851 0 0 0 1 466.4377 392.0825 -33.3841 14 'point symmetry operation' ? ? 0.9009 0.4341 0 -0.4341 0.9009 0 0 0 1 -72.4274 115.2914 -36.166 15 'point symmetry operation' ? ? -0.7484 -0.6633 0 0.6633 -0.7484 0 0 0 1 521.4952 234.6429 -38.9482 16 'point symmetry operation' ? ? -0.7484 0.6633 0 -0.6633 -0.7484 0 0 0 1 234.6427 521.4952 38.9478 17 'point symmetry operation' ? ? 0.5391 0.8422 0 -0.8422 0.5391 0 0 0 1 -82.4643 281.7779 -41.73 18 'point symmetry operation' ? ? 0.5391 -0.8422 0 0.8422 0.5391 0 0 0 1 281.7778 -82.4644 41.7301 19 'point symmetry operation' ? ? -0.289 -0.9573 0 0.9573 -0.289 0 0 0 1 485.751 71.7299 -44.5122 20 'point symmetry operation' ? ? -0.289 0.9573 0 -0.9573 -0.289 0 0 0 1 71.7295 485.7508 44.5117 21 'point symmetry operation' ? ? 0.017 0.9999 0 -0.9999 0.017 0 0 0 1 -3.649 428.7686 -47.2941 22 'point symmetry operation' ? ? 0.017 -0.9999 0 0.9999 0.017 0 0 0 1 428.7693 -3.6481 47.294 23 'point symmetry operation' ? ? 0.2563 -0.9666 0 0.9666 0.2563 0 0 0 1 369.8377 -48.1972 -50.0763 24 'point symmetry operation' ? ? 0.2563 0.9666 0 -0.9666 0.2563 0 0 0 1 -48.1978 369.8374 50.076 25 'point symmetry operation' ? ? -0.5102 0.8601 0 -0.8601 -0.5102 0 0 0 1 140.576 512.5414 -52.8579 26 'point symmetry operation' ? ? -0.5102 -0.8601 0 0.8601 -0.5102 0 0 0 1 512.5412 140.5758 52.858 27 'point symmetry operation' ? ? 0.7254 -0.6884 0 0.6884 0.7254 0 0 0 1 208.2349 -89.4647 -55.64 28 'point symmetry operation' ? ? 0.7254 0.6884 0 -0.6884 0.7254 0 0 0 1 -89.465 208.2348 55.6403 29 'point symmetry operation' ? ? -0.8856 0.4645 0 -0.4645 -0.8856 0 0 0 1 307.3075 508.1755 -58.4217 30 'point symmetry operation' ? ? -0.8856 -0.4645 0 0.4645 -0.8856 0 0 0 1 508.1752 307.3072 58.4216 31 'point symmetry operation' ? ? 0.9787 -0.2053 0 0.2053 0.9787 0 0 0 1 49.0126 -39.7964 -61.2036 32 'point symmetry operation' ? ? 0.9787 0.2054 0 -0.2054 0.9787 0 0 0 1 -39.7967 49.0134 61.2041 33 'point symmetry operation' ? ? -0.9976 -0.0693 0 0.0693 -0.9976 0 0 0 1 446.9497 416.9698 -63.9862 34 'point symmetry operation' ? ? -0.8128 -0.5825 0 0.5825 -0.8128 0 0 0 1 517.9647 266.055 -69.5504 35 'point symmetry operation' ? ? 0.6232 0.7821 0 -0.7821 0.6232 0 0 0 1 -87.6342 250.5933 -72.3318 36 'point symmetry operation' ? ? -0.3863 -0.9224 0 0.9224 -0.3863 0 0 0 1 499.2286 100.3224 -75.114 37 'point symmetry operation' ? ? 0.1201 0.9928 0 -0.9928 0.1201 0 0 0 1 -24.4122 404.9353 -77.8961 38 'point symmetry operation' ? ? 0.1551 -0.9879 0 0.9879 0.1551 0 0 0 1 396.3139 -30.9295 -80.6783 39 'point symmetry operation' ? ? -0.4187 0.9081 0 -0.9081 -0.4187 0 0 0 1 110.3941 503.1476 -83.4603 40 'point symmetry operation' ? ? 0.6504 -0.7596 0 0.7596 0.6504 0 0 0 1 239.8343 -88.6578 -86.2423 41 'point symmetry operation' ? ? -0.9621 0.2727 0 -0.2727 -0.9621 0 0 0 1 365.316 483.2528 2.7822 42 'point symmetry operation' ? ? 0.8513 -0.5247 0 0.5247 0.8513 0 0 0 1 145.6287 -81.306 5.5641 43 'point symmetry operation' ? ? -0.6759 0.737 0 -0.737 -0.6759 0 0 0 1 203.0344 521.7642 8.3459 44 'point symmetry operation' ? ? 0.4493 -0.8934 0 0.8934 0.4493 0 0 0 1 312.2619 -74.1033 11.1279 45 'point symmetry operation' ? ? -0.1887 0.982 0 -0.982 -0.1887 0 0 0 1 44.6802 469.3935 13.9097 46 'point symmetry operation' ? ? -0.0863 -0.9963 0 0.9963 -0.0863 0 0 0 1 450.332 19.465 16.692 47 'point symmetry operation' ? ? 0.3547 0.935 0 -0.935 0.3547 0 0 0 1 -62.6401 341.7203 19.4739 48 'point symmetry operation' ? ? -0.5962 -0.8028 0 0.8028 -0.5962 0 0 0 1 518.7688 171.566 22.2558 49 'point symmetry operation' ? ? 0.7926 0.6098 0 -0.6098 0.7926 0 0 0 1 -87.0053 176.7208 25.038 50 'point symmetry operation' ? ? -0.9288 -0.3706 0 0.3706 -0.9288 0 0 0 1 497.2151 336.9564 27.8198 51 'point symmetry operation' ? ? 0.9947 0.1032 0 -0.1032 0.9947 0 0 0 1 -21.1667 23.477 30.6021 52 'point symmetry operation' ? ? -0.9851 0.1719 0 -0.1719 -0.9851 0 0 0 1 392.0824 466.438 33.3843 53 'point symmetry operation' ? ? 0.9009 -0.4341 0 0.4341 0.9009 0 0 0 1 115.2916 -72.4277 36.1664 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 262 A CYS 262 1_555 B ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 A SG CYS 264 A CYS 264 1_555 B ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc3 A SG CYS 287 A CYS 287 1_555 B ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc4 A SG CYS 305 A CYS 305 1_555 B ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8PK7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ZN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 600 _pdbx_nonpoly_scheme.auth_seq_num 600 _pdbx_nonpoly_scheme.pdb_mon_id ZN _pdbx_nonpoly_scheme.auth_mon_id ZN _pdbx_nonpoly_scheme.pdb_ins_code . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 286.33 _atom_site.Cartn_y 199.649 _atom_site.Cartn_z 206.51 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 600 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 1 #