data_8PK9 # _model_server_result.job_id '_lV_35OgjITrk6womeRohQ' _model_server_result.datetime_utc '2025-02-05 11:45:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pk9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":201}' # _entry.id 8PK9 # _exptl.entry_id 8PK9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 55.845 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PK9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 205 A LYS 258 1_555 F C4A PLP . A PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale2 A C ALA 327 A ALA 380 1_555 A N CSS 328 A CSS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale3 A C CSS 328 A CSS 381 1_555 A N THR 329 A THR 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale4 C OG SER 37 C SER 37 1_555 G P24 8Q1 . C 8Q1 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.557 ? covale ? covale5 D C HIS 105 D HIS 137 1_555 D N CSS 106 D CSS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 D C CSS 106 D CSS 138 1_555 D N SER 107 D SER 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A SD CSS 328 A CSS 381 1_555 H FE FE2 . D FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 D OD1 ASP 39 D ASP 71 1_555 H FE FE2 . D FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc3 D OD2 ASP 39 D ASP 71 1_555 H FE FE2 . D FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc4 D SG CYS 63 D CYS 95 1_555 H FE FE2 . D FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc5 D SD CSS 106 D CSS 138 1_555 H FE FE2 . D FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? # _chem_comp.formula 'Fe 2' _chem_comp.formula_weight 55.845 _chem_comp.id FE2 _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8PK9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 PLP A 1 501 501 PLP PLP . G 7 8Q1 C 1 101 101 8Q1 8Q1 . H 8 FE2 D 1 201 201 FE2 FE2 . I 9 HOH A 1 601 81 HOH HOH . I 9 HOH A 2 602 151 HOH HOH . I 9 HOH A 3 603 166 HOH HOH . I 9 HOH A 4 604 134 HOH HOH . I 9 HOH A 5 605 52 HOH HOH . I 9 HOH A 6 606 147 HOH HOH . I 9 HOH A 7 607 93 HOH HOH . I 9 HOH A 8 608 129 HOH HOH . I 9 HOH A 9 609 141 HOH HOH . I 9 HOH A 10 610 99 HOH HOH . I 9 HOH A 11 611 223 HOH HOH . I 9 HOH A 12 612 144 HOH HOH . I 9 HOH A 13 613 230 HOH HOH . I 9 HOH A 14 614 146 HOH HOH . I 9 HOH A 15 615 222 HOH HOH . I 9 HOH A 16 616 229 HOH HOH . I 9 HOH A 17 617 42 HOH HOH . I 9 HOH A 18 618 109 HOH HOH . I 9 HOH A 19 619 65 HOH HOH . I 9 HOH A 20 620 110 HOH HOH . I 9 HOH A 21 621 98 HOH HOH . I 9 HOH A 22 622 145 HOH HOH . I 9 HOH A 23 623 162 HOH HOH . I 9 HOH A 24 624 59 HOH HOH . I 9 HOH A 25 625 86 HOH HOH . I 9 HOH A 26 626 66 HOH HOH . I 9 HOH A 27 627 48 HOH HOH . I 9 HOH A 28 628 72 HOH HOH . I 9 HOH A 29 629 46 HOH HOH . I 9 HOH A 30 630 27 HOH HOH . I 9 HOH A 31 631 95 HOH HOH . I 9 HOH A 32 632 41 HOH HOH . I 9 HOH A 33 633 131 HOH HOH . I 9 HOH A 34 634 152 HOH HOH . I 9 HOH A 35 635 101 HOH HOH . I 9 HOH A 36 636 143 HOH HOH . I 9 HOH A 37 637 156 HOH HOH . I 9 HOH A 38 638 135 HOH HOH . I 9 HOH A 39 639 53 HOH HOH . I 9 HOH A 40 640 83 HOH HOH . I 9 HOH A 41 641 34 HOH HOH . I 9 HOH A 42 642 61 HOH HOH . I 9 HOH A 43 643 154 HOH HOH . I 9 HOH A 44 644 155 HOH HOH . I 9 HOH A 45 645 196 HOH HOH . I 9 HOH A 46 646 97 HOH HOH . I 9 HOH A 47 647 138 HOH HOH . I 9 HOH A 48 648 96 HOH HOH . I 9 HOH A 49 649 30 HOH HOH . I 9 HOH A 50 650 94 HOH HOH . I 9 HOH A 51 651 121 HOH HOH . I 9 HOH A 52 652 165 HOH HOH . I 9 HOH A 53 653 224 HOH HOH . I 9 HOH A 54 654 140 HOH HOH . I 9 HOH A 55 655 63 HOH HOH . I 9 HOH A 56 656 82 HOH HOH . I 9 HOH A 57 657 127 HOH HOH . I 9 HOH A 58 658 56 HOH HOH . I 9 HOH A 59 659 80 HOH HOH . I 9 HOH A 60 660 226 HOH HOH . I 9 HOH A 61 661 142 HOH HOH . I 9 HOH A 62 662 22 HOH HOH . I 9 HOH A 63 663 102 HOH HOH . I 9 HOH A 64 664 231 HOH HOH . I 9 HOH A 65 665 159 HOH HOH . I 9 HOH A 66 666 148 HOH HOH . I 9 HOH A 67 667 75 HOH HOH . I 9 HOH A 68 668 16 HOH HOH . I 9 HOH A 69 669 149 HOH HOH . I 9 HOH A 70 670 225 HOH HOH . I 9 HOH A 71 671 114 HOH HOH . I 9 HOH A 72 672 228 HOH HOH . I 9 HOH A 73 673 39 HOH HOH . I 9 HOH A 74 674 57 HOH HOH . I 9 HOH A 75 675 118 HOH HOH . J 9 HOH B 1 101 175 HOH HOH . J 9 HOH B 2 102 227 HOH HOH . J 9 HOH B 3 103 38 HOH HOH . J 9 HOH B 4 104 189 HOH HOH . J 9 HOH B 5 105 172 HOH HOH . J 9 HOH B 6 106 176 HOH HOH . J 9 HOH B 7 107 169 HOH HOH . J 9 HOH B 8 108 18 HOH HOH . J 9 HOH B 9 109 170 HOH HOH . J 9 HOH B 10 110 111 HOH HOH . J 9 HOH B 11 111 174 HOH HOH . J 9 HOH B 12 112 178 HOH HOH . K 9 HOH D 1 301 194 HOH HOH . K 9 HOH D 2 302 12 HOH HOH . K 9 HOH D 3 303 14 HOH HOH . K 9 HOH D 4 304 32 HOH HOH . K 9 HOH D 5 305 4 HOH HOH . K 9 HOH D 6 306 193 HOH HOH . L 9 HOH E 1 301 213 HOH HOH . L 9 HOH E 2 302 218 HOH HOH . L 9 HOH E 3 303 5 HOH HOH . L 9 HOH E 4 304 11 HOH HOH . L 9 HOH E 5 305 13 HOH HOH . L 9 HOH E 6 306 216 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE2 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 8 _atom_site.Cartn_x 72.306 _atom_site.Cartn_y 109.328 _atom_site.Cartn_z 113.655 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 75.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE2 _atom_site.auth_seq_id 201 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #