data_8PKZ
#
_model_server_result.job_id            NwR57nW2-AxcLpJ0mGoc3A 
_model_server_result.datetime_utc      '2025-07-21 17:07:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pkz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":337}' 
#
_entry.id    8PKZ 
#
_exptl.entry_id    8PKZ 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     ? 
_entity.formula_weight              363.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B P 5GP . A 5GP 336 1_555 C O3' 5GP . A 5GP 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.585 ? 
covale ? covale2 B O3' 5GP . A 5GP 336 1_555 C P 5GP . A 5GP 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? 
#
_chem_comp.formula           'C10 H14 N5 O8 P' 
_chem_comp.formula_weight    363.221 
_chem_comp.id                5GP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 5GP doub 1 n n 
P O2P 5GP sing 2 n n 
P O3P 5GP sing 3 n n 
P O5' 5GP sing 4 n n 
O2P HOP2 5GP sing 5 n n 
O3P HOP3 5GP sing 6 n n 
O5' C5' 5GP sing 7 n n 
C5' C4' 5GP sing 8 n n 
C5' "H5'1" 5GP sing 9 n n 
C5' "H5'2" 5GP sing 10 n n 
C4' O4' 5GP sing 11 n n 
C4' C3' 5GP sing 12 n n 
C4' H4' 5GP sing 13 n n 
O4' C1' 5GP sing 14 n n 
C3' O3' 5GP sing 15 n n 
C3' C2' 5GP sing 16 n n 
C3' H3' 5GP sing 17 n n 
O3' HO3' 5GP sing 18 n n 
C2' O2' 5GP sing 19 n n 
C2' C1' 5GP sing 20 n n 
C2' H2' 5GP sing 21 n n 
O2' HO2' 5GP sing 22 n n 
C1' N9 5GP sing 23 n n 
C1' H1' 5GP sing 24 n n 
N9 C8 5GP sing 25 n y 
N9 C4 5GP sing 26 n y 
C8 N7 5GP doub 27 n y 
C8 H8 5GP sing 28 n n 
N7 C5 5GP sing 29 n y 
C5 C6 5GP sing 30 n n 
C5 C4 5GP doub 31 n y 
C6 O6 5GP doub 32 n n 
C6 N1 5GP sing 33 n n 
N1 C2 5GP sing 34 n n 
N1 HN1 5GP sing 35 n n 
C2 N2 5GP sing 36 n n 
C2 N3 5GP doub 37 n n 
N2 HN21 5GP sing 38 n n 
N2 HN22 5GP sing 39 n n 
N3 C4 5GP sing 40 n n 
#
_atom_sites.entry_id                     8PKZ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 5GP A 1 336 336 5GP GMP . 
C 2 5GP A 1 337 337 5GP GMP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 5GP . . . C 2 -12.26 -23.986 2.367 1 22.1 ? P 5GP 337 A 1 
HETATM 2 O O1P 5GP . . . C 2 -13.673 -24.253 2.01 1 41.52 -1 O1P 5GP 337 A 1 
HETATM 3 O O3P 5GP . . . C 2 -11.944 -23.357 3.673 1 34.15 ? O3P 5GP 337 A 1 
HETATM 4 O O5' 5GP . . . C 2 -11.678 -23.052 1.222 1 1.12 ? O5' 5GP 337 A 1 
HETATM 5 C C5' 5GP . . . C 2 -12.518 -22.515 0.211 1 73.41 ? C5' 5GP 337 A 1 
HETATM 6 C C4' 5GP . . . C 2 -12.164 -21.07 -0.032 1 24.23 ? C4' 5GP 337 A 1 
HETATM 7 O O4' 5GP . . . C 2 -13.179 -20.329 0.652 1 3.15 ? O4' 5GP 337 A 1 
HETATM 8 C C3' 5GP . . . C 2 -10.891 -20.568 0.637 1 31.23 ? C3' 5GP 337 A 1 
HETATM 9 O O3' 5GP . . . C 2 -9.745 -20.822 -0.153 1 14.44 ? O3' 5GP 337 A 1 
HETATM 10 C C2' 5GP . . . C 2 -11.176 -19.076 0.727 1 75.54 ? C2' 5GP 337 A 1 
HETATM 11 O O2' 5GP . . . C 2 -11.029 -18.387 -0.497 1 51.34 ? O2' 5GP 337 A 1 
HETATM 12 C C1' 5GP . . . C 2 -12.653 -19.091 1.11 1 33.04 ? C1' 5GP 337 A 1 
HETATM 13 N N9 5GP . . . C 2 -12.773 -19.023 2.564 1 44.44 ? N9 5GP 337 A 1 
HETATM 14 C C8 5GP . . . C 2 -12.272 -19.896 3.503 1 61 ? C8 5GP 337 A 1 
HETATM 15 N N7 5GP . . . C 2 -12.497 -19.508 4.728 1 44.55 ? N7 5GP 337 A 1 
HETATM 16 C C5 5GP . . . C 2 -13.2 -18.32 4.586 1 71.41 ? C5 5GP 337 A 1 
HETATM 17 C C6 5GP . . . C 2 -13.711 -17.424 5.567 1 72.44 ? C6 5GP 337 A 1 
HETATM 18 O O6 5GP . . . C 2 -13.655 -17.516 6.801 1 10.11 ? O6 5GP 337 A 1 
HETATM 19 N N1 5GP . . . C 2 -14.341 -16.33 4.981 1 54.12 ? N1 5GP 337 A 1 
HETATM 20 C C2 5GP . . . C 2 -14.47 -16.128 3.627 1 63.33 ? C2 5GP 337 A 1 
HETATM 21 N N2 5GP . . . C 2 -15.096 -15.011 3.248 1 71.15 ? N2 5GP 337 A 1 
HETATM 22 N N3 5GP . . . C 2 -14.013 -16.96 2.71 1 24.33 ? N3 5GP 337 A 1 
HETATM 23 C C4 5GP . . . C 2 -13.388 -18.02 3.257 1 14.23 ? C4 5GP 337 A 1 
HETATM 24 H "H5'1" 5GP . . . C 2 -12.385 -23.081 -0.711 1 40.42 ? "H5'1" 5GP 337 A 1 
HETATM 25 H "H5'2" 5GP . . . C 2 -13.557 -22.581 0.533 1 74.42 ? "H5'2" 5GP 337 A 1 
HETATM 26 H H4' 5GP . . . C 2 -12.04 -21.019 -1.114 1 10.52 ? H4' 5GP 337 A 1 
HETATM 27 H H3' 5GP . . . C 2 -10.675 -21.047 1.592 1 2.32 ? H3' 5GP 337 A 1 
HETATM 28 H H2' 5GP . . . C 2 -10.492 -18.568 1.407 1 3.31 ? H2' 5GP 337 A 1 
HETATM 29 H HO2' 5GP . . . C 2 -10.096 -18.274 -0.692 1 34.45 ? HO2' 5GP 337 A 1 
HETATM 30 H H1' 5GP . . . C 2 -13.187 -18.247 0.673 1 30.41 ? H1' 5GP 337 A 1 
HETATM 31 H H8 5GP . . . C 2 -11.743 -20.814 3.25 1 34.41 ? H8 5GP 337 A 1 
HETATM 32 H HN1 5GP . . . C 2 -14.731 -15.631 5.597 1 34.51 ? HN1 5GP 337 A 1 
HETATM 33 H HN21 5GP . . . C 2 -15.447 -14.369 3.944 1 41.11 ? HN21 5GP 337 A 1 
HETATM 34 H HN22 5GP . . . C 2 -15.218 -14.809 2.266 1 4.11 ? HN22 5GP 337 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    57 
_model_server_stats.query_time_ms           6041 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           34 
#