data_8PL8 # _model_server_result.job_id AD15QDY5cDqE4XQ3S-8GRw _model_server_result.datetime_utc '2024-11-07 18:47:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pl8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 8PL8 # _exptl.entry_id 8PL8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.259 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(3-methylsulfanyl-1,2,4-thiadiazol-5-yl)ethanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.12 _cell.angle_gamma 90 _cell.entry_id 8PL8 _cell.length_a 144.915 _cell.length_b 103.158 _cell.length_c 61.136 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PL8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_757 -x+2,y,-z+2 -1 0 0 0 1 0 0 0 -1 241.8189 0 112.451662 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 155 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 154 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 160 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 159 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.042 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C5 H7 N3 O S2' _chem_comp.formula_weight 189.259 _chem_comp.id ZLO _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(3-methylsulfanyl-1,2,4-thiadiazol-5-yl)ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C1 ZLO doub 467 n n C C1 ZLO sing 468 n n C1 N ZLO sing 469 n n N C2 ZLO sing 470 n n S C2 ZLO sing 471 n y S N2 ZLO sing 472 n y C2 N1 ZLO doub 473 n y N1 C3 ZLO sing 474 n y N2 C3 ZLO doub 475 n y C3 S1 ZLO sing 476 n n C4 S1 ZLO sing 477 n n C4 H1 ZLO sing 478 n n C4 H2 ZLO sing 479 n n C4 H3 ZLO sing 480 n n N H4 ZLO sing 481 n n C H5 ZLO sing 482 n n C H6 ZLO sing 483 n n C H7 ZLO sing 484 n n # _atom_sites.entry_id 8PL8 _atom_sites.fract_transf_matrix[1][1] 0.006901 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002946 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 1 FAD FAD . C 3 ZLO A 1 602 1 ZLO LIG . D 3 ZLO A 1 603 2 ZLO LIG . E 4 HOH A 1 701 116 HOH HOH . E 4 HOH A 2 702 197 HOH HOH . E 4 HOH A 3 703 194 HOH HOH . E 4 HOH A 4 704 170 HOH HOH . E 4 HOH A 5 705 44 HOH HOH . E 4 HOH A 6 706 11 HOH HOH . E 4 HOH A 7 707 133 HOH HOH . E 4 HOH A 8 708 68 HOH HOH . E 4 HOH A 9 709 122 HOH HOH . E 4 HOH A 10 710 141 HOH HOH . E 4 HOH A 11 711 196 HOH HOH . E 4 HOH A 12 712 29 HOH HOH . E 4 HOH A 13 713 71 HOH HOH . E 4 HOH A 14 714 38 HOH HOH . E 4 HOH A 15 715 14 HOH HOH . E 4 HOH A 16 716 108 HOH HOH . E 4 HOH A 17 717 210 HOH HOH . E 4 HOH A 18 718 88 HOH HOH . E 4 HOH A 19 719 118 HOH HOH . E 4 HOH A 20 720 92 HOH HOH . E 4 HOH A 21 721 167 HOH HOH . E 4 HOH A 22 722 156 HOH HOH . E 4 HOH A 23 723 15 HOH HOH . E 4 HOH A 24 724 58 HOH HOH . E 4 HOH A 25 725 206 HOH HOH . E 4 HOH A 26 726 153 HOH HOH . E 4 HOH A 27 727 39 HOH HOH . E 4 HOH A 28 728 26 HOH HOH . E 4 HOH A 29 729 158 HOH HOH . E 4 HOH A 30 730 124 HOH HOH . E 4 HOH A 31 731 33 HOH HOH . E 4 HOH A 32 732 186 HOH HOH . E 4 HOH A 33 733 28 HOH HOH . E 4 HOH A 34 734 30 HOH HOH . E 4 HOH A 35 735 95 HOH HOH . E 4 HOH A 36 736 174 HOH HOH . E 4 HOH A 37 737 16 HOH HOH . E 4 HOH A 38 738 42 HOH HOH . E 4 HOH A 39 739 3 HOH HOH . E 4 HOH A 40 740 66 HOH HOH . E 4 HOH A 41 741 54 HOH HOH . E 4 HOH A 42 742 218 HOH HOH . E 4 HOH A 43 743 110 HOH HOH . E 4 HOH A 44 744 144 HOH HOH . E 4 HOH A 45 745 24 HOH HOH . E 4 HOH A 46 746 85 HOH HOH . E 4 HOH A 47 747 21 HOH HOH . E 4 HOH A 48 748 19 HOH HOH . E 4 HOH A 49 749 148 HOH HOH . E 4 HOH A 50 750 25 HOH HOH . E 4 HOH A 51 751 147 HOH HOH . E 4 HOH A 52 752 70 HOH HOH . E 4 HOH A 53 753 111 HOH HOH . E 4 HOH A 54 754 205 HOH HOH . E 4 HOH A 55 755 172 HOH HOH . E 4 HOH A 56 756 175 HOH HOH . E 4 HOH A 57 757 63 HOH HOH . E 4 HOH A 58 758 17 HOH HOH . E 4 HOH A 59 759 9 HOH HOH . E 4 HOH A 60 760 191 HOH HOH . E 4 HOH A 61 761 188 HOH HOH . E 4 HOH A 62 762 77 HOH HOH . E 4 HOH A 63 763 204 HOH HOH . E 4 HOH A 64 764 129 HOH HOH . E 4 HOH A 65 765 6 HOH HOH . E 4 HOH A 66 766 13 HOH HOH . E 4 HOH A 67 767 18 HOH HOH . E 4 HOH A 68 768 93 HOH HOH . E 4 HOH A 69 769 107 HOH HOH . E 4 HOH A 70 770 203 HOH HOH . E 4 HOH A 71 771 48 HOH HOH . E 4 HOH A 72 772 87 HOH HOH . E 4 HOH A 73 773 50 HOH HOH . E 4 HOH A 74 774 80 HOH HOH . E 4 HOH A 75 775 200 HOH HOH . E 4 HOH A 76 776 32 HOH HOH . E 4 HOH A 77 777 104 HOH HOH . E 4 HOH A 78 778 219 HOH HOH . E 4 HOH A 79 779 35 HOH HOH . E 4 HOH A 80 780 89 HOH HOH . E 4 HOH A 81 781 2 HOH HOH . E 4 HOH A 82 782 177 HOH HOH . E 4 HOH A 83 783 41 HOH HOH . E 4 HOH A 84 784 12 HOH HOH . E 4 HOH A 85 785 189 HOH HOH . E 4 HOH A 86 786 161 HOH HOH . E 4 HOH A 87 787 94 HOH HOH . E 4 HOH A 88 788 7 HOH HOH . E 4 HOH A 89 789 207 HOH HOH . E 4 HOH A 90 790 217 HOH HOH . E 4 HOH A 91 791 125 HOH HOH . E 4 HOH A 92 792 162 HOH HOH . E 4 HOH A 93 793 202 HOH HOH . E 4 HOH A 94 794 79 HOH HOH . E 4 HOH A 95 795 201 HOH HOH . E 4 HOH A 96 796 61 HOH HOH . E 4 HOH A 97 797 212 HOH HOH . E 4 HOH A 98 798 84 HOH HOH . E 4 HOH A 99 799 20 HOH HOH . E 4 HOH A 100 800 8 HOH HOH . E 4 HOH A 101 801 60 HOH HOH . E 4 HOH A 102 802 136 HOH HOH . E 4 HOH A 103 803 55 HOH HOH . E 4 HOH A 104 804 27 HOH HOH . E 4 HOH A 105 805 47 HOH HOH . E 4 HOH A 106 806 105 HOH HOH . E 4 HOH A 107 807 209 HOH HOH . E 4 HOH A 108 808 102 HOH HOH . E 4 HOH A 109 809 65 HOH HOH . E 4 HOH A 110 810 56 HOH HOH . E 4 HOH A 111 811 138 HOH HOH . E 4 HOH A 112 812 86 HOH HOH . E 4 HOH A 113 813 193 HOH HOH . E 4 HOH A 114 814 130 HOH HOH . E 4 HOH A 115 815 198 HOH HOH . E 4 HOH A 116 816 99 HOH HOH . E 4 HOH A 117 817 208 HOH HOH . E 4 HOH A 118 818 132 HOH HOH . E 4 HOH A 119 819 134 HOH HOH . E 4 HOH A 120 820 214 HOH HOH . E 4 HOH A 121 821 211 HOH HOH . E 4 HOH A 122 822 72 HOH HOH . E 4 HOH A 123 823 62 HOH HOH . E 4 HOH A 124 824 83 HOH HOH . E 4 HOH A 125 825 5 HOH HOH . E 4 HOH A 126 826 82 HOH HOH . E 4 HOH A 127 827 213 HOH HOH . E 4 HOH A 128 828 199 HOH HOH . E 4 HOH A 129 829 127 HOH HOH . E 4 HOH A 130 830 45 HOH HOH . E 4 HOH A 131 831 216 HOH HOH . E 4 HOH A 132 832 135 HOH HOH . E 4 HOH A 133 833 23 HOH HOH . E 4 HOH A 134 834 176 HOH HOH . E 4 HOH A 135 835 36 HOH HOH . E 4 HOH A 136 836 46 HOH HOH . E 4 HOH A 137 837 215 HOH HOH . E 4 HOH A 138 838 43 HOH HOH . E 4 HOH A 139 839 40 HOH HOH . E 4 HOH A 140 840 37 HOH HOH . E 4 HOH A 141 841 160 HOH HOH . E 4 HOH A 142 842 184 HOH HOH . E 4 HOH A 143 843 51 HOH HOH . E 4 HOH A 144 844 96 HOH HOH . E 4 HOH A 145 845 64 HOH HOH . E 4 HOH A 146 846 53 HOH HOH . E 4 HOH A 147 847 52 HOH HOH . E 4 HOH A 148 848 123 HOH HOH . E 4 HOH A 149 849 74 HOH HOH . E 4 HOH A 150 850 180 HOH HOH . E 4 HOH A 151 851 75 HOH HOH . E 4 HOH A 152 852 117 HOH HOH . E 4 HOH A 153 853 163 HOH HOH . E 4 HOH A 154 854 101 HOH HOH . E 4 HOH A 155 855 98 HOH HOH . E 4 HOH A 156 856 81 HOH HOH . E 4 HOH A 157 857 100 HOH HOH . E 4 HOH A 158 858 10 HOH HOH . E 4 HOH A 159 859 49 HOH HOH . E 4 HOH A 160 860 190 HOH HOH . E 4 HOH A 161 861 183 HOH HOH . E 4 HOH A 162 862 179 HOH HOH . E 4 HOH A 163 863 139 HOH HOH . E 4 HOH A 164 864 173 HOH HOH . E 4 HOH A 165 865 4 HOH HOH . E 4 HOH A 166 866 97 HOH HOH . E 4 HOH A 167 867 112 HOH HOH . E 4 HOH A 168 868 90 HOH HOH . E 4 HOH A 169 869 195 HOH HOH . E 4 HOH A 170 870 168 HOH HOH . E 4 HOH A 171 871 150 HOH HOH . E 4 HOH A 172 872 155 HOH HOH . E 4 HOH A 173 873 165 HOH HOH . E 4 HOH A 174 874 76 HOH HOH . E 4 HOH A 175 875 152 HOH HOH . E 4 HOH A 176 876 114 HOH HOH . E 4 HOH A 177 877 131 HOH HOH . E 4 HOH A 178 878 22 HOH HOH . E 4 HOH A 179 879 121 HOH HOH . E 4 HOH A 180 880 78 HOH HOH . E 4 HOH A 181 881 57 HOH HOH . E 4 HOH A 182 882 178 HOH HOH . E 4 HOH A 183 883 31 HOH HOH . E 4 HOH A 184 884 192 HOH HOH . E 4 HOH A 185 885 146 HOH HOH . E 4 HOH A 186 886 181 HOH HOH . E 4 HOH A 187 887 69 HOH HOH . E 4 HOH A 188 888 149 HOH HOH . E 4 HOH A 189 889 1 HOH HOH . E 4 HOH A 190 890 106 HOH HOH . E 4 HOH A 191 891 119 HOH HOH . E 4 HOH A 192 892 34 HOH HOH . E 4 HOH A 193 893 67 HOH HOH . E 4 HOH A 194 894 145 HOH HOH . E 4 HOH A 195 895 103 HOH HOH . E 4 HOH A 196 896 59 HOH HOH . E 4 HOH A 197 897 120 HOH HOH . E 4 HOH A 198 898 140 HOH HOH . E 4 HOH A 199 899 154 HOH HOH . E 4 HOH A 200 900 166 HOH HOH . E 4 HOH A 201 901 169 HOH HOH . E 4 HOH A 202 902 73 HOH HOH . E 4 HOH A 203 903 126 HOH HOH . E 4 HOH A 204 904 157 HOH HOH . E 4 HOH A 205 905 159 HOH HOH . E 4 HOH A 206 906 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ZLO . . . D 3 126.643 -7.473 86.396 1 50.17 ? N1 ZLO 603 A 1 HETATM 2 C C4 ZLO . . . D 3 129.211 -4.353 85.794 1 57.35 ? C4 ZLO 603 A 1 HETATM 3 N N ZLO . . . D 3 126.099 -9.479 87.768 1 50.91 ? N ZLO 603 A 1 HETATM 4 C C ZLO . . . D 3 127.197 -10.07 89.956 1 43.91 ? C ZLO 603 A 1 HETATM 5 O O ZLO . . . D 3 125.533 -11.305 88.984 1 28.46 ? O ZLO 603 A 1 HETATM 6 C C1 ZLO . . . D 3 126.213 -10.373 88.887 1 33.45 ? C1 ZLO 603 A 1 HETATM 7 C C2 ZLO . . . D 3 126.867 -8.325 87.435 1 56.46 ? C2 ZLO 603 A 1 HETATM 8 C C3 ZLO . . . D 3 127.716 -6.484 86.421 1 55.26 ? C3 ZLO 603 A 1 HETATM 9 N N2 ZLO . . . D 3 128.683 -6.521 87.322 1 55.56 ? N2 ZLO 603 A 1 HETATM 10 S S ZLO . . . D 3 128.395 -7.836 88.331 1 70.2 ? S ZLO 603 A 1 HETATM 11 S S1 ZLO . . . D 3 127.717 -5.226 85.259 1 81.82 ? S1 ZLO 603 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 11 #