data_8PLL # _model_server_result.job_id vDsJbMI1f5V-1O_1dqx8Vg _model_server_result.datetime_utc '2024-11-23 07:37:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pll # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 8PLL # _exptl.entry_id 8PLL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 224.256 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[2-methyl-1,3-bis(oxidanyl)propan-2-yl]-3-phenyl-urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.08 _cell.angle_gamma 90 _cell.entry_id 8PLL _cell.length_a 145.18 _cell.length_b 103.63 _cell.length_c 59.61 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PLL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_757 -x+2,y,-z+2 -1 0 0 0 1 0 0 0 -1 243.623851 0 109.67744 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 155 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 154 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 160 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 159 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.063 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H16 N2 O3' _chem_comp.formula_weight 224.256 _chem_comp.id AYV _chem_comp.mon_nstd_flag . _chem_comp.name 1-[2-methyl-1,3-bis(oxidanyl)propan-2-yl]-3-phenyl-urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 AYV doub 70 n y C8 C7 AYV sing 71 n y C9 C10 AYV sing 72 n y C7 C6 AYV doub 73 n y C10 C11 AYV doub 74 n y C6 C11 AYV sing 75 n y C6 N2 AYV sing 76 n n N2 C5 AYV sing 77 n n O2 C4 AYV sing 78 n n N1 C5 AYV sing 79 n n N1 C2 AYV sing 80 n n C5 O3 AYV doub 81 n n O1 C3 AYV sing 82 n n C4 C2 AYV sing 83 n n C2 C3 AYV sing 84 n n C2 C1 AYV sing 85 n n N1 H1 AYV sing 86 n n C4 H2 AYV sing 87 n n C4 H3 AYV sing 88 n n C7 H4 AYV sing 89 n n C8 H5 AYV sing 90 n n C10 H6 AYV sing 91 n n C1 H7 AYV sing 92 n n C1 H8 AYV sing 93 n n C1 H9 AYV sing 94 n n C3 H10 AYV sing 95 n n C3 H11 AYV sing 96 n n O1 H12 AYV sing 97 n n O2 H13 AYV sing 98 n n N2 H14 AYV sing 99 n n C9 H15 AYV sing 100 n n C11 H16 AYV sing 101 n n # _atom_sites.entry_id 8PLL _atom_sites.fract_transf_matrix[1][1] 0.006888 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002935 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 1 FAD FAD . C 3 AYV A 1 602 1 AYV LIG . D 4 HOH A 1 701 107 HOH HOH . D 4 HOH A 2 702 110 HOH HOH . D 4 HOH A 3 703 133 HOH HOH . D 4 HOH A 4 704 92 HOH HOH . D 4 HOH A 5 705 170 HOH HOH . D 4 HOH A 6 706 29 HOH HOH . D 4 HOH A 7 707 124 HOH HOH . D 4 HOH A 8 708 118 HOH HOH . D 4 HOH A 9 709 80 HOH HOH . D 4 HOH A 10 710 71 HOH HOH . D 4 HOH A 11 711 33 HOH HOH . D 4 HOH A 12 712 77 HOH HOH . D 4 HOH A 13 713 85 HOH HOH . D 4 HOH A 14 714 39 HOH HOH . D 4 HOH A 15 715 16 HOH HOH . D 4 HOH A 16 716 50 HOH HOH . D 4 HOH A 17 717 30 HOH HOH . D 4 HOH A 18 718 32 HOH HOH . D 4 HOH A 19 719 19 HOH HOH . D 4 HOH A 20 720 127 HOH HOH . D 4 HOH A 21 721 93 HOH HOH . D 4 HOH A 22 722 176 HOH HOH . D 4 HOH A 23 723 153 HOH HOH . D 4 HOH A 24 724 94 HOH HOH . D 4 HOH A 25 725 147 HOH HOH . D 4 HOH A 26 726 162 HOH HOH . D 4 HOH A 27 727 36 HOH HOH . D 4 HOH A 28 728 144 HOH HOH . D 4 HOH A 29 729 69 HOH HOH . D 4 HOH A 30 730 109 HOH HOH . D 4 HOH A 31 731 63 HOH HOH . D 4 HOH A 32 732 9 HOH HOH . D 4 HOH A 33 733 174 HOH HOH . D 4 HOH A 34 734 15 HOH HOH . D 4 HOH A 35 735 28 HOH HOH . D 4 HOH A 36 736 20 HOH HOH . D 4 HOH A 37 737 25 HOH HOH . D 4 HOH A 38 738 72 HOH HOH . D 4 HOH A 39 739 38 HOH HOH . D 4 HOH A 40 740 61 HOH HOH . D 4 HOH A 41 741 7 HOH HOH . D 4 HOH A 42 742 101 HOH HOH . D 4 HOH A 43 743 45 HOH HOH . D 4 HOH A 44 744 48 HOH HOH . D 4 HOH A 45 745 146 HOH HOH . D 4 HOH A 46 746 24 HOH HOH . D 4 HOH A 47 747 135 HOH HOH . D 4 HOH A 48 748 123 HOH HOH . D 4 HOH A 49 749 65 HOH HOH . D 4 HOH A 50 750 14 HOH HOH . D 4 HOH A 51 751 137 HOH HOH . D 4 HOH A 52 752 66 HOH HOH . D 4 HOH A 53 753 189 HOH HOH . D 4 HOH A 54 754 95 HOH HOH . D 4 HOH A 55 755 167 HOH HOH . D 4 HOH A 56 756 150 HOH HOH . D 4 HOH A 57 757 122 HOH HOH . D 4 HOH A 58 758 83 HOH HOH . D 4 HOH A 59 759 68 HOH HOH . D 4 HOH A 60 760 44 HOH HOH . D 4 HOH A 61 761 121 HOH HOH . D 4 HOH A 62 762 134 HOH HOH . D 4 HOH A 63 763 132 HOH HOH . D 4 HOH A 64 764 60 HOH HOH . D 4 HOH A 65 765 10 HOH HOH . D 4 HOH A 66 766 156 HOH HOH . D 4 HOH A 67 767 151 HOH HOH . D 4 HOH A 68 768 57 HOH HOH . D 4 HOH A 69 769 84 HOH HOH . D 4 HOH A 70 770 130 HOH HOH . D 4 HOH A 71 771 37 HOH HOH . D 4 HOH A 72 772 18 HOH HOH . D 4 HOH A 73 773 139 HOH HOH . D 4 HOH A 74 774 78 HOH HOH . D 4 HOH A 75 775 100 HOH HOH . D 4 HOH A 76 776 88 HOH HOH . D 4 HOH A 77 777 86 HOH HOH . D 4 HOH A 78 778 47 HOH HOH . D 4 HOH A 79 779 185 HOH HOH . D 4 HOH A 80 780 148 HOH HOH . D 4 HOH A 81 781 141 HOH HOH . D 4 HOH A 82 782 129 HOH HOH . D 4 HOH A 83 783 163 HOH HOH . D 4 HOH A 84 784 102 HOH HOH . D 4 HOH A 85 785 79 HOH HOH . D 4 HOH A 86 786 175 HOH HOH . D 4 HOH A 87 787 116 HOH HOH . D 4 HOH A 88 788 54 HOH HOH . D 4 HOH A 89 789 180 HOH HOH . D 4 HOH A 90 790 11 HOH HOH . D 4 HOH A 91 791 13 HOH HOH . D 4 HOH A 92 792 3 HOH HOH . D 4 HOH A 93 793 104 HOH HOH . D 4 HOH A 94 794 114 HOH HOH . D 4 HOH A 95 795 152 HOH HOH . D 4 HOH A 96 796 186 HOH HOH . D 4 HOH A 97 797 138 HOH HOH . D 4 HOH A 98 798 160 HOH HOH . D 4 HOH A 99 799 70 HOH HOH . D 4 HOH A 100 800 87 HOH HOH . D 4 HOH A 101 801 158 HOH HOH . D 4 HOH A 102 802 58 HOH HOH . D 4 HOH A 103 803 41 HOH HOH . D 4 HOH A 104 804 177 HOH HOH . D 4 HOH A 105 805 42 HOH HOH . D 4 HOH A 106 806 98 HOH HOH . D 4 HOH A 107 807 27 HOH HOH . D 4 HOH A 108 808 8 HOH HOH . D 4 HOH A 109 809 81 HOH HOH . D 4 HOH A 110 810 99 HOH HOH . D 4 HOH A 111 811 52 HOH HOH . D 4 HOH A 112 812 56 HOH HOH . D 4 HOH A 113 813 49 HOH HOH . D 4 HOH A 114 814 125 HOH HOH . D 4 HOH A 115 815 26 HOH HOH . D 4 HOH A 116 816 105 HOH HOH . D 4 HOH A 117 817 6 HOH HOH . D 4 HOH A 118 818 172 HOH HOH . D 4 HOH A 119 819 111 HOH HOH . D 4 HOH A 120 820 23 HOH HOH . D 4 HOH A 121 821 75 HOH HOH . D 4 HOH A 122 822 131 HOH HOH . D 4 HOH A 123 823 112 HOH HOH . D 4 HOH A 124 824 55 HOH HOH . D 4 HOH A 125 825 173 HOH HOH . D 4 HOH A 126 826 17 HOH HOH . D 4 HOH A 127 827 43 HOH HOH . D 4 HOH A 128 828 74 HOH HOH . D 4 HOH A 129 829 190 HOH HOH . D 4 HOH A 130 830 97 HOH HOH . D 4 HOH A 131 831 178 HOH HOH . D 4 HOH A 132 832 2 HOH HOH . D 4 HOH A 133 833 89 HOH HOH . D 4 HOH A 134 834 182 HOH HOH . D 4 HOH A 135 835 12 HOH HOH . D 4 HOH A 136 836 40 HOH HOH . D 4 HOH A 137 837 76 HOH HOH . D 4 HOH A 138 838 161 HOH HOH . D 4 HOH A 139 839 193 HOH HOH . D 4 HOH A 140 840 108 HOH HOH . D 4 HOH A 141 841 82 HOH HOH . D 4 HOH A 142 842 183 HOH HOH . D 4 HOH A 143 843 187 HOH HOH . D 4 HOH A 144 844 5 HOH HOH . D 4 HOH A 145 845 35 HOH HOH . D 4 HOH A 146 846 96 HOH HOH . D 4 HOH A 147 847 136 HOH HOH . D 4 HOH A 148 848 46 HOH HOH . D 4 HOH A 149 849 179 HOH HOH . D 4 HOH A 150 850 191 HOH HOH . D 4 HOH A 151 851 21 HOH HOH . D 4 HOH A 152 852 188 HOH HOH . D 4 HOH A 153 853 31 HOH HOH . D 4 HOH A 154 854 53 HOH HOH . D 4 HOH A 155 855 62 HOH HOH . D 4 HOH A 156 856 51 HOH HOH . D 4 HOH A 157 857 4 HOH HOH . D 4 HOH A 158 858 192 HOH HOH . D 4 HOH A 159 859 184 HOH HOH . D 4 HOH A 160 860 1 HOH HOH . D 4 HOH A 161 861 113 HOH HOH . D 4 HOH A 162 862 90 HOH HOH . D 4 HOH A 163 863 64 HOH HOH . D 4 HOH A 164 864 165 HOH HOH . D 4 HOH A 165 865 106 HOH HOH . D 4 HOH A 166 866 22 HOH HOH . D 4 HOH A 167 867 143 HOH HOH . D 4 HOH A 168 868 155 HOH HOH . D 4 HOH A 169 869 142 HOH HOH . D 4 HOH A 170 870 168 HOH HOH . D 4 HOH A 171 871 119 HOH HOH . D 4 HOH A 172 872 149 HOH HOH . D 4 HOH A 173 873 171 HOH HOH . D 4 HOH A 174 874 67 HOH HOH . D 4 HOH A 175 875 59 HOH HOH . D 4 HOH A 176 876 115 HOH HOH . D 4 HOH A 177 877 34 HOH HOH . D 4 HOH A 178 878 166 HOH HOH . D 4 HOH A 179 879 181 HOH HOH . D 4 HOH A 180 880 103 HOH HOH . D 4 HOH A 181 881 169 HOH HOH . D 4 HOH A 182 882 164 HOH HOH . D 4 HOH A 183 883 154 HOH HOH . D 4 HOH A 184 884 73 HOH HOH . D 4 HOH A 185 885 140 HOH HOH . D 4 HOH A 186 886 120 HOH HOH . D 4 HOH A 187 887 145 HOH HOH . D 4 HOH A 188 888 157 HOH HOH . D 4 HOH A 189 889 126 HOH HOH . D 4 HOH A 190 890 159 HOH HOH . D 4 HOH A 191 891 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 AYV . . . C 3 111.874 -7.446 79.08 1 47.19 ? N1 AYV 602 A 1 HETATM 2 C C4 AYV . . . C 3 109.905 -7.827 80.549 1 58.18 ? C4 AYV 602 A 1 HETATM 3 C C5 AYV . . . C 3 112.976 -7.781 79.93 1 48.5 ? C5 AYV 602 A 1 HETATM 4 C C6 AYV . . . C 3 115.323 -8.889 79.78 1 41.5 ? C6 AYV 602 A 1 HETATM 5 C C7 AYV . . . C 3 115.788 -10.175 79.434 1 36.92 ? C7 AYV 602 A 1 HETATM 6 C C8 AYV . . . C 3 116.9 -10.692 80.074 1 32.36 ? C8 AYV 602 A 1 HETATM 7 C C10 AYV . . . C 3 117.132 -8.688 81.382 1 39.28 ? C10 AYV 602 A 1 HETATM 8 C C1 AYV . . . C 3 109.595 -6.718 78.31 1 46.82 ? C1 AYV 602 A 1 HETATM 9 C C2 AYV . . . C 3 110.571 -6.869 79.499 1 53.17 ? C2 AYV 602 A 1 HETATM 10 C C3 AYV . . . C 3 110.751 -5.431 80.089 1 54.15 ? C3 AYV 602 A 1 HETATM 11 O O1 AYV . . . C 3 111.594 -5.428 81.196 1 58.48 ? O1 AYV 602 A 1 HETATM 12 O O2 AYV . . . C 3 108.592 -7.407 80.83 1 63.8 ? O2 AYV 602 A 1 HETATM 13 O O3 AYV . . . C 3 113 -7.527 81.151 1 55.24 ? O3 AYV 602 A 1 HETATM 14 N N2 AYV . . . C 3 114.099 -8.377 79.23 1 42.51 ? N2 AYV 602 A 1 HETATM 15 C C9 AYV . . . C 3 117.581 -9.968 81.052 1 35.93 ? C9 AYV 602 A 1 HETATM 16 C C11 AYV . . . C 3 116.015 -8.135 80.755 1 42.76 ? C11 AYV 602 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #