data_8PLM # _model_server_result.job_id nR5TMvMWQXn1NNATDc_auw _model_server_result.datetime_utc '2024-11-23 07:24:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8plm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8PLM # _exptl.entry_id 8PLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.32 _cell.angle_gamma 90 _cell.entry_id 8PLM _cell.length_a 145.989 _cell.length_b 103.984 _cell.length_c 62.22 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_757 -x+2,y,-z+2 -1 0 0 0 1 0 0 0 -1 242.716425 0 114.274279 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 155 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 154 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 160 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 159 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.046 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 8PLM _atom_sites.fract_transf_matrix[1][1] 0.00685 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002953 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009617 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017502 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 1 FAD FAD . C 3 JJ7 A 1 602 1 JJ7 LIG . D 3 JJ7 A 1 603 2 JJ7 LIG . E 4 HOH A 1 701 29 HOH HOH . E 4 HOH A 2 702 146 HOH HOH . E 4 HOH A 3 703 185 HOH HOH . E 4 HOH A 4 704 24 HOH HOH . E 4 HOH A 5 705 162 HOH HOH . E 4 HOH A 6 706 200 HOH HOH . E 4 HOH A 7 707 84 HOH HOH . E 4 HOH A 8 708 10 HOH HOH . E 4 HOH A 9 709 16 HOH HOH . E 4 HOH A 10 710 108 HOH HOH . E 4 HOH A 11 711 174 HOH HOH . E 4 HOH A 12 712 25 HOH HOH . E 4 HOH A 13 713 172 HOH HOH . E 4 HOH A 14 714 32 HOH HOH . E 4 HOH A 15 715 14 HOH HOH . E 4 HOH A 16 716 132 HOH HOH . E 4 HOH A 17 717 62 HOH HOH . E 4 HOH A 18 718 13 HOH HOH . E 4 HOH A 19 719 19 HOH HOH . E 4 HOH A 20 720 6 HOH HOH . E 4 HOH A 21 721 194 HOH HOH . E 4 HOH A 22 722 11 HOH HOH . E 4 HOH A 23 723 15 HOH HOH . E 4 HOH A 24 724 111 HOH HOH . E 4 HOH A 25 725 85 HOH HOH . E 4 HOH A 26 726 18 HOH HOH . E 4 HOH A 27 727 7 HOH HOH . E 4 HOH A 28 728 3 HOH HOH . E 4 HOH A 29 729 177 HOH HOH . E 4 HOH A 30 730 23 HOH HOH . E 4 HOH A 31 731 54 HOH HOH . E 4 HOH A 32 732 21 HOH HOH . E 4 HOH A 33 733 26 HOH HOH . E 4 HOH A 34 734 102 HOH HOH . E 4 HOH A 35 735 56 HOH HOH . E 4 HOH A 36 736 43 HOH HOH . E 4 HOH A 37 737 31 HOH HOH . E 4 HOH A 38 738 191 HOH HOH . E 4 HOH A 39 739 178 HOH HOH . E 4 HOH A 40 740 5 HOH HOH . E 4 HOH A 41 741 12 HOH HOH . E 4 HOH A 42 742 41 HOH HOH . E 4 HOH A 43 743 4 HOH HOH . E 4 HOH A 44 744 1 HOH HOH . E 4 HOH A 45 745 35 HOH HOH . E 4 HOH A 46 746 22 HOH HOH . E 4 HOH A 47 747 192 HOH HOH . E 4 HOH A 48 748 58 HOH HOH . E 4 HOH A 49 749 180 HOH HOH . E 4 HOH A 50 750 105 HOH HOH . E 4 HOH A 51 751 96 HOH HOH . E 4 HOH A 52 752 168 HOH HOH . E 4 HOH A 53 753 155 HOH HOH . E 4 HOH A 54 754 181 HOH HOH . E 4 HOH A 55 755 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 143.482 -2.119 72.686 1 26.58 ? PA FAD 601 A 1 HETATM 2 O O1A FAD . . . B 2 142.775 -2.485 71.424 1 26.88 ? O1A FAD 601 A 1 HETATM 3 O O2A FAD . . . B 2 143.066 -2.855 73.959 1 27.44 ? O2A FAD 601 A 1 HETATM 4 O O5B FAD . . . B 2 145.11 -2.199 72.48 1 29.47 ? O5B FAD 601 A 1 HETATM 5 C C5B FAD . . . B 2 146.02 -1.919 73.566 1 26.13 ? C5B FAD 601 A 1 HETATM 6 C C4B FAD . . . B 2 147.248 -2.794 73.408 1 29.49 ? C4B FAD 601 A 1 HETATM 7 O O4B FAD . . . B 2 148.347 -2.266 74.193 1 28.66 ? O4B FAD 601 A 1 HETATM 8 C C3B FAD . . . B 2 147.084 -4.257 73.84 1 29.99 ? C3B FAD 601 A 1 HETATM 9 O O3B FAD . . . B 2 147.723 -5.111 72.896 1 32.14 ? O3B FAD 601 A 1 HETATM 10 C C2B FAD . . . B 2 147.822 -4.303 75.18 1 31.13 ? C2B FAD 601 A 1 HETATM 11 O O2B FAD . . . B 2 148.261 -5.617 75.532 1 26.47 ? O2B FAD 601 A 1 HETATM 12 C C1B FAD . . . B 2 148.967 -3.348 74.864 1 27.45 ? C1B FAD 601 A 1 HETATM 13 N N9A FAD . . . B 2 149.715 -2.849 76.022 1 29.92 ? N9A FAD 601 A 1 HETATM 14 C C8A FAD . . . B 2 149.23 -2.617 77.283 1 29.76 ? C8A FAD 601 A 1 HETATM 15 N N7A FAD . . . B 2 150.129 -2.165 78.126 1 28.09 ? N7A FAD 601 A 1 HETATM 16 C C5A FAD . . . B 2 151.293 -2.113 77.376 1 27.89 ? C5A FAD 601 A 1 HETATM 17 C C6A FAD . . . B 2 152.612 -1.719 77.69 1 30.49 ? C6A FAD 601 A 1 HETATM 18 N N6A FAD . . . B 2 152.991 -1.28 78.898 1 32.79 ? N6A FAD 601 A 1 HETATM 19 N N1A FAD . . . B 2 153.538 -1.777 76.705 1 28.72 ? N1A FAD 601 A 1 HETATM 20 C C2A FAD . . . B 2 153.164 -2.206 75.495 1 30.75 ? C2A FAD 601 A 1 HETATM 21 N N3A FAD . . . B 2 151.952 -2.591 75.079 1 28.58 ? N3A FAD 601 A 1 HETATM 22 C C4A FAD . . . B 2 151.054 -2.526 76.074 1 29.3 ? C4A FAD 601 A 1 HETATM 23 N N1 FAD . . . B 2 134.223 -2.273 70.187 1 23.62 ? N1 FAD 601 A 1 HETATM 24 C C2 FAD . . . B 2 133.449 -2.03 69.093 1 23.52 ? C2 FAD 601 A 1 HETATM 25 O O2 FAD . . . B 2 133.492 -0.937 68.497 1 25.03 ? O2 FAD 601 A 1 HETATM 26 N N3 FAD . . . B 2 132.604 -3.036 68.619 1 24.38 ? N3 FAD 601 A 1 HETATM 27 C C4 FAD . . . B 2 132.452 -4.325 69.167 1 23.98 ? C4 FAD 601 A 1 HETATM 28 O O4 FAD . . . B 2 131.67 -5.135 68.648 1 22.01 ? O4 FAD 601 A 1 HETATM 29 C C4X FAD . . . B 2 133.279 -4.553 70.347 1 24.65 ? C4X FAD 601 A 1 HETATM 30 N N5 FAD . . . B 2 133.215 -5.735 70.94 1 23.51 ? N5 FAD 601 A 1 HETATM 31 C C5X FAD . . . B 2 134.014 -5.949 72.052 1 25.33 ? C5X FAD 601 A 1 HETATM 32 C C6 FAD . . . B 2 133.956 -7.191 72.689 1 27.7 ? C6 FAD 601 A 1 HETATM 33 C C7 FAD . . . B 2 134.729 -7.452 73.821 1 27.42 ? C7 FAD 601 A 1 HETATM 34 C C7M FAD . . . B 2 134.648 -8.807 74.48 1 23.98 ? C7M FAD 601 A 1 HETATM 35 C C8 FAD . . . B 2 135.601 -6.461 74.308 1 22.74 ? C8 FAD 601 A 1 HETATM 36 C C8M FAD . . . B 2 136.459 -6.715 75.522 1 26.02 ? C8M FAD 601 A 1 HETATM 37 C C9 FAD . . . B 2 135.663 -5.225 73.672 1 26.03 ? C9 FAD 601 A 1 HETATM 38 C C9A FAD . . . B 2 134.879 -4.959 72.554 1 25.44 ? C9A FAD 601 A 1 HETATM 39 N N10 FAD . . . B 2 134.913 -3.708 71.898 1 26.34 ? N10 FAD 601 A 1 HETATM 40 C C10 FAD . . . B 2 134.126 -3.47 70.785 1 24.44 ? C10 FAD 601 A 1 HETATM 41 C C1' FAD . . . B 2 135.795 -2.624 72.378 1 26.79 ? C1' FAD 601 A 1 HETATM 42 C C2' FAD . . . B 2 137.126 -2.555 71.636 1 26.69 ? C2' FAD 601 A 1 HETATM 43 O O2' FAD . . . B 2 137.817 -3.794 71.759 1 27.19 ? O2' FAD 601 A 1 HETATM 44 C C3' FAD . . . B 2 137.995 -1.459 72.258 1 28.33 ? C3' FAD 601 A 1 HETATM 45 O O3' FAD . . . B 2 137.226 -0.26 72.321 1 24.7 ? O3' FAD 601 A 1 HETATM 46 C C4' FAD . . . B 2 139.292 -1.195 71.487 1 31.18 ? C4' FAD 601 A 1 HETATM 47 O O4' FAD . . . B 2 140.048 -2.404 71.338 1 31.21 ? O4' FAD 601 A 1 HETATM 48 C C5' FAD . . . B 2 140.129 -0.103 72.121 1 29.08 ? C5' FAD 601 A 1 HETATM 49 O O5' FAD . . . B 2 141.397 -0.015 71.434 1 29.1 ? O5' FAD 601 A 1 HETATM 50 P P FAD . . . B 2 142.661 0.624 72.135 1 30.83 ? P FAD 601 A 1 HETATM 51 O O1P FAD . . . B 2 143.651 1.022 71.034 1 30.57 ? O1P FAD 601 A 1 HETATM 52 O O2P FAD . . . B 2 142.249 1.712 73.042 1 25.85 ? O2P FAD 601 A 1 HETATM 53 O O3P FAD . . . B 2 143.274 -0.575 72.997 1 27.53 ? O3P FAD 601 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #