data_8PLM # _model_server_result.job_id V4tLJ_IaEu15CBp4OIbKtA _model_server_result.datetime_utc '2024-11-07 19:13:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8plm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 8PLM # _exptl.entry_id 8PLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{4-[(2-methoxyethyl)amino]piperidin-1-yl}ethan-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.32 _cell.angle_gamma 90 _cell.entry_id 8PLM _cell.length_a 145.989 _cell.length_b 103.984 _cell.length_c 62.22 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_757 -x+2,y,-z+2 -1 0 0 0 1 0 0 0 -1 242.716425 0 114.274279 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 155 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 154 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 160 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 159 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.046 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H20 N2 O2' _chem_comp.formula_weight 200.278 _chem_comp.id JJ7 _chem_comp.mon_nstd_flag . _chem_comp.name 1-{4-[(2-methoxyethyl)amino]piperidin-1-yl}ethan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O03 C02 JJ7 doub 264 n n C05 C06 JJ7 sing 265 n n C05 N04 JJ7 sing 266 n n C02 N04 JJ7 sing 267 n n C02 C01 JJ7 sing 268 n n C06 C07 JJ7 sing 269 n n N04 C09 JJ7 sing 270 n n C07 C08 JJ7 sing 271 n n C07 N10 JJ7 sing 272 n n C09 C08 JJ7 sing 273 n n C11 N10 JJ7 sing 274 n n C11 C12 JJ7 sing 275 n n O13 C14 JJ7 sing 276 n n O13 C12 JJ7 sing 277 n n C01 H011 JJ7 sing 278 n n C01 H012 JJ7 sing 279 n n C01 H013 JJ7 sing 280 n n C05 H051 JJ7 sing 281 n n C05 H052 JJ7 sing 282 n n C06 H061 JJ7 sing 283 n n C06 H062 JJ7 sing 284 n n C07 H071 JJ7 sing 285 n n C08 H081 JJ7 sing 286 n n C08 H082 JJ7 sing 287 n n C09 H091 JJ7 sing 288 n n C09 H092 JJ7 sing 289 n n N10 H101 JJ7 sing 290 n n C11 H111 JJ7 sing 291 n n C11 H112 JJ7 sing 292 n n C12 H121 JJ7 sing 293 n n C12 H122 JJ7 sing 294 n n C14 H143 JJ7 sing 295 n n C14 H141 JJ7 sing 296 n n C14 H142 JJ7 sing 297 n n # _atom_sites.entry_id 8PLM _atom_sites.fract_transf_matrix[1][1] 0.00685 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002953 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009617 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017502 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 1 FAD FAD . C 3 JJ7 A 1 602 1 JJ7 LIG . D 3 JJ7 A 1 603 2 JJ7 LIG . E 4 HOH A 1 701 29 HOH HOH . E 4 HOH A 2 702 146 HOH HOH . E 4 HOH A 3 703 185 HOH HOH . E 4 HOH A 4 704 24 HOH HOH . E 4 HOH A 5 705 162 HOH HOH . E 4 HOH A 6 706 200 HOH HOH . E 4 HOH A 7 707 84 HOH HOH . E 4 HOH A 8 708 10 HOH HOH . E 4 HOH A 9 709 16 HOH HOH . E 4 HOH A 10 710 108 HOH HOH . E 4 HOH A 11 711 174 HOH HOH . E 4 HOH A 12 712 25 HOH HOH . E 4 HOH A 13 713 172 HOH HOH . E 4 HOH A 14 714 32 HOH HOH . E 4 HOH A 15 715 14 HOH HOH . E 4 HOH A 16 716 132 HOH HOH . E 4 HOH A 17 717 62 HOH HOH . E 4 HOH A 18 718 13 HOH HOH . E 4 HOH A 19 719 19 HOH HOH . E 4 HOH A 20 720 6 HOH HOH . E 4 HOH A 21 721 194 HOH HOH . E 4 HOH A 22 722 11 HOH HOH . E 4 HOH A 23 723 15 HOH HOH . E 4 HOH A 24 724 111 HOH HOH . E 4 HOH A 25 725 85 HOH HOH . E 4 HOH A 26 726 18 HOH HOH . E 4 HOH A 27 727 7 HOH HOH . E 4 HOH A 28 728 3 HOH HOH . E 4 HOH A 29 729 177 HOH HOH . E 4 HOH A 30 730 23 HOH HOH . E 4 HOH A 31 731 54 HOH HOH . E 4 HOH A 32 732 21 HOH HOH . E 4 HOH A 33 733 26 HOH HOH . E 4 HOH A 34 734 102 HOH HOH . E 4 HOH A 35 735 56 HOH HOH . E 4 HOH A 36 736 43 HOH HOH . E 4 HOH A 37 737 31 HOH HOH . E 4 HOH A 38 738 191 HOH HOH . E 4 HOH A 39 739 178 HOH HOH . E 4 HOH A 40 740 5 HOH HOH . E 4 HOH A 41 741 12 HOH HOH . E 4 HOH A 42 742 41 HOH HOH . E 4 HOH A 43 743 4 HOH HOH . E 4 HOH A 44 744 1 HOH HOH . E 4 HOH A 45 745 35 HOH HOH . E 4 HOH A 46 746 22 HOH HOH . E 4 HOH A 47 747 192 HOH HOH . E 4 HOH A 48 748 58 HOH HOH . E 4 HOH A 49 749 180 HOH HOH . E 4 HOH A 50 750 105 HOH HOH . E 4 HOH A 51 751 96 HOH HOH . E 4 HOH A 52 752 168 HOH HOH . E 4 HOH A 53 753 155 HOH HOH . E 4 HOH A 54 754 181 HOH HOH . E 4 HOH A 55 755 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 JJ7 . . . D 3 138.155 -35.559 82.384 1 38.09 ? C01 JJ7 603 A 1 HETATM 2 C C02 JJ7 . . . D 3 137.022 -36.504 82.284 1 40.84 ? C02 JJ7 603 A 1 HETATM 3 O O03 JJ7 . . . D 3 136 -36.338 82.968 1 42.13 ? O03 JJ7 603 A 1 HETATM 4 N N04 JJ7 . . . D 3 137.179 -37.617 81.342 1 45.96 ? N04 JJ7 603 A 1 HETATM 5 C C05 JJ7 . . . D 3 138.477 -37.751 80.613 1 43.49 ? C05 JJ7 603 A 1 HETATM 6 C C06 JJ7 . . . D 3 138.697 -39.135 79.929 1 45.4 ? C06 JJ7 603 A 1 HETATM 7 C C07 JJ7 . . . D 3 137.478 -39.453 79.052 1 47.75 ? C07 JJ7 603 A 1 HETATM 8 C C08 JJ7 . . . D 3 136.235 -39.472 79.934 1 43.43 ? C08 JJ7 603 A 1 HETATM 9 C C09 JJ7 . . . D 3 136.037 -38.052 80.523 1 44.26 ? C09 JJ7 603 A 1 HETATM 10 N N10 JJ7 . . . D 3 137.67 -40.854 78.4 1 58.79 ? N10 JJ7 603 A 1 HETATM 11 C C11 JJ7 . . . D 3 137.756 -40.847 76.848 1 66.81 ? C11 JJ7 603 A 1 HETATM 12 C C12 JJ7 . . . D 3 136.95 -42.046 76.231 1 68.95 ? C12 JJ7 603 A 1 HETATM 13 O O13 JJ7 . . . D 3 137.9 -43.061 75.935 1 76.36 ? O13 JJ7 603 A 1 HETATM 14 C C14 JJ7 . . . D 3 137.368 -44.202 75.283 1 67.85 ? C14 JJ7 603 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #