data_8PM6 # _model_server_result.job_id o4qBAiWZHTXNKIfXBZ21Ug _model_server_result.datetime_utc '2025-03-04 09:12:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pm6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1409}' # _entry.id 8PM6 # _exptl.entry_id 8PM6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 494.004 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-chloro-N-(2-{4-[(cyclohexylcarbamoyl)sulfamoyl]phenyl}ethyl)-2-methoxybenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PM6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H28 Cl N3 O5 S' _chem_comp.formula_weight 494.004 _chem_comp.id GBM _chem_comp.mon_nstd_flag . _chem_comp.name 5-chloro-N-(2-{4-[(cyclohexylcarbamoyl)sulfamoyl]phenyl}ethyl)-2-methoxybenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Glibenclamide;Glyburide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C31 GBM sing 160 n n C31 C29 GBM doub 161 n y C31 C32 GBM sing 162 n y C29 C27 GBM sing 163 n y C32 C30 GBM doub 164 n y O6 C26 GBM doub 165 n n C27 C26 GBM sing 166 n n C27 C28 GBM doub 167 n y C30 C28 GBM sing 168 n y C26 N10 GBM sing 169 n n C28 O7 GBM sing 170 n n O3 C17 GBM doub 171 n n N10 C25 GBM sing 172 n n C23 C21 GBM doub 173 n y C23 C19 GBM sing 174 n y O7 C33 GBM sing 175 n n C21 C18 GBM sing 176 n y C25 C20 GBM sing 177 n n N9 C17 GBM sing 178 n n N9 S2 GBM sing 179 n n C17 N8 GBM sing 180 n n C20 C19 GBM sing 181 n n C19 C24 GBM doub 182 n y O5 S2 GBM doub 183 n n C18 S2 GBM sing 184 n n C18 C22 GBM doub 185 n y C14 C12 GBM sing 186 n n C14 C16 GBM sing 187 n n C13 C11 GBM sing 188 n n C13 C15 GBM sing 189 n n S2 O4 GBM doub 190 n n C12 C11 GBM sing 191 n n N8 C11 GBM sing 192 n n C15 C16 GBM sing 193 n n C24 C22 GBM sing 194 n y N8 H1 GBM sing 195 n n N9 H2 GBM sing 196 n n N10 H3 GBM sing 197 n n C11 H4 GBM sing 198 n n C12 H5 GBM sing 199 n n C12 H6 GBM sing 200 n n C13 H7 GBM sing 201 n n C13 H8 GBM sing 202 n n C14 H9 GBM sing 203 n n C14 H10 GBM sing 204 n n C15 H11 GBM sing 205 n n C15 H12 GBM sing 206 n n C16 H13 GBM sing 207 n n C16 H14 GBM sing 208 n n C20 H15 GBM sing 209 n n C20 H16 GBM sing 210 n n C21 H17 GBM sing 211 n n C22 H18 GBM sing 212 n n C23 H19 GBM sing 213 n n C24 H20 GBM sing 214 n n C25 H21 GBM sing 215 n n C25 H22 GBM sing 216 n n C29 H23 GBM sing 217 n n C30 H24 GBM sing 218 n n C32 H25 GBM sing 219 n n C33 H26 GBM sing 220 n n C33 H27 GBM sing 221 n n C33 H28 GBM sing 222 n n # _atom_sites.entry_id 8PM6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CLR A 1 1401 1401 CLR CLR . C 2 CLR A 1 1402 1402 CLR CLR . D 2 CLR A 1 1403 1403 CLR CLR . E 2 CLR A 1 1404 1408 CLR CLR . F 2 CLR A 1 1405 1410 CLR CLR . G 2 CLR A 1 1406 1413 CLR CLR . H 2 CLR A 1 1407 1414 CLR CLR . I 2 CLR A 1 1408 1417 CLR CLR . J 3 GBM A 1 1409 1401 GBM GBM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 GBM . . . J 3 127.619 128.911 143.777 1 117.6 ? O3 GBM 1409 A 1 HETATM 2 O O4 GBM . . . J 3 129.216 128.426 141.377 1 112.59 ? O4 GBM 1409 A 1 HETATM 3 O O5 GBM . . . J 3 130.379 127.942 143.498 1 108.36 ? O5 GBM 1409 A 1 HETATM 4 O O6 GBM . . . J 3 129.654 121.328 140.806 1 107.05 ? O6 GBM 1409 A 1 HETATM 5 CL CL1 GBM . . . J 3 130.796 115.878 143.045 1 119.5 ? CL1 GBM 1409 A 1 HETATM 6 S S2 GBM . . . J 3 129.614 127.496 142.382 1 125.23 ? S2 GBM 1409 A 1 HETATM 7 O O7 GBM . . . J 3 130.026 121.622 143.734 1 109.75 ? O7 GBM 1409 A 1 HETATM 8 N N8 GBM . . . J 3 126.359 127.096 144.281 1 111.21 ? N8 GBM 1409 A 1 HETATM 9 N N9 GBM . . . J 3 128.234 126.896 142.985 1 113.7 ? N9 GBM 1409 A 1 HETATM 10 N N10 GBM . . . J 3 131.844 120.98 140.669 1 108.09 ? N10 GBM 1409 A 1 HETATM 11 C C11 GBM . . . J 3 126.43 126.535 145.628 1 107.3 ? C11 GBM 1409 A 1 HETATM 12 C C12 GBM . . . J 3 127.333 125.318 145.632 1 104.2 ? C12 GBM 1409 A 1 HETATM 13 C C13 GBM . . . J 3 125.038 126.177 146.109 1 108.81 ? C13 GBM 1409 A 1 HETATM 14 C C14 GBM . . . J 3 127.366 124.676 147.012 1 108.35 ? C14 GBM 1409 A 1 HETATM 15 C C15 GBM . . . J 3 125.09 125.543 147.492 1 107.61 ? C15 GBM 1409 A 1 HETATM 16 C C16 GBM . . . J 3 125.974 124.318 147.48 1 108.66 ? C16 GBM 1409 A 1 HETATM 17 C C17 GBM . . . J 3 127.403 127.694 143.699 1 114.64 ? C17 GBM 1409 A 1 HETATM 18 C C18 GBM . . . J 3 130.5 126.196 141.607 1 113.13 ? C18 GBM 1409 A 1 HETATM 19 C C19 GBM . . . J 3 131.936 124.168 140.359 1 110.18 ? C19 GBM 1409 A 1 HETATM 20 C C20 GBM . . . J 3 132.736 123.074 139.693 1 106.61 ? C20 GBM 1409 A 1 HETATM 21 C C21 GBM . . . J 3 131.439 126.506 140.642 1 115.52 ? C21 GBM 1409 A 1 HETATM 22 C C22 GBM . . . J 3 130.272 124.882 141.959 1 107.24 ? C22 GBM 1409 A 1 HETATM 23 C C23 GBM . . . J 3 132.155 125.494 140.036 1 112.92 ? C23 GBM 1409 A 1 HETATM 24 C C24 GBM . . . J 3 130.993 123.884 141.332 1 109.65 ? C24 GBM 1409 A 1 HETATM 25 C C25 GBM . . . J 3 131.953 121.81 139.476 1 107.17 ? C25 GBM 1409 A 1 HETATM 26 C C26 GBM . . . J 3 130.653 120.738 141.198 1 108.08 ? C26 GBM 1409 A 1 HETATM 27 C C27 GBM . . . J 3 130.533 119.812 142.351 1 107.32 ? C27 GBM 1409 A 1 HETATM 28 C C28 GBM . . . J 3 130.192 120.274 143.625 1 106.82 ? C28 GBM 1409 A 1 HETATM 29 C C29 GBM . . . J 3 130.706 118.441 142.187 1 108.78 ? C29 GBM 1409 A 1 HETATM 30 C C30 GBM . . . J 3 130.075 119.402 144.694 1 108.85 ? C30 GBM 1409 A 1 HETATM 31 C C31 GBM . . . J 3 130.569 117.589 143.254 1 112.12 ? C31 GBM 1409 A 1 HETATM 32 C C32 GBM . . . J 3 130.259 118.057 144.514 1 110.15 ? C32 GBM 1409 A 1 HETATM 33 C C33 GBM . . . J 3 128.815 122.115 144.294 1 112.31 ? C33 GBM 1409 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #