data_8PM9 # _model_server_result.job_id MSqH2j3uSRD3qx0q5eBmpA _model_server_result.datetime_utc '2024-11-01 22:23:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pm9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 8PM9 # _exptl.entry_id 8PM9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.231 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description (3-fluoranyl-5-oxidanyl-phenyl)-(3-methoxy-5-nitro-4-oxidanyl-phenyl)methanone _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PM9 _cell.length_a 43.504 _cell.length_b 64.089 _cell.length_c 84.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H10 F N O6' _chem_comp.formula_weight 307.231 _chem_comp.id ZP2 _chem_comp.mon_nstd_flag . _chem_comp.name (3-fluoranyl-5-oxidanyl-phenyl)-(3-methoxy-5-nitro-4-oxidanyl-phenyl)methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Pharmacokinetically Improved TTR Binder (PITB)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 O14 ZP2 sing 357 n n O10 C09 ZP2 doub 358 n n O14 C13 ZP2 sing 359 n n C12 C13 ZP2 doub 360 n y C12 C11 ZP2 sing 361 n y C13 C16 ZP2 sing 362 n y C09 C11 ZP2 sing 363 n n C09 C07 ZP2 sing 364 n n C08 C07 ZP2 doub 365 n y C08 C02 ZP2 sing 366 n y C11 C19 ZP2 doub 367 n y O01 C02 ZP2 sing 368 n n C16 O17 ZP2 sing 369 n n C16 C18 ZP2 doub 370 n y C07 C06 ZP2 sing 371 n y C02 C03 ZP2 doub 372 n y C19 C18 ZP2 sing 373 n y C18 N20 ZP2 sing 374 n n O21 N20 ZP2 sing 375 n n N20 O22 ZP2 doub 376 n n C06 C04 ZP2 doub 377 n y C03 C04 ZP2 sing 378 n y C04 F05 ZP2 sing 379 n n O17 H1 ZP2 sing 380 n n C03 H2 ZP2 sing 381 n n C06 H3 ZP2 sing 382 n n C08 H4 ZP2 sing 383 n n C12 H5 ZP2 sing 384 n n C15 H6 ZP2 sing 385 n n C15 H7 ZP2 sing 386 n n C15 H8 ZP2 sing 387 n n C19 H9 ZP2 sing 388 n n O01 H10 ZP2 sing 389 n n # _atom_sites.entry_id 8PM9 _atom_sites.fract_transf_matrix[1][1] 0.022986 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZP2 A 1 201 201 ZP2 ITB . D 2 ZP2 B 1 201 201 ZP2 ITB . E 3 HOH A 1 301 12 HOH HOH . E 3 HOH A 2 302 19 HOH HOH . E 3 HOH A 3 303 5 HOH HOH . E 3 HOH A 4 304 28 HOH HOH . E 3 HOH A 5 305 3 HOH HOH . E 3 HOH A 6 306 6 HOH HOH . E 3 HOH A 7 307 13 HOH HOH . E 3 HOH A 8 308 14 HOH HOH . E 3 HOH A 9 309 30 HOH HOH . E 3 HOH A 10 310 1 HOH HOH . E 3 HOH A 11 311 20 HOH HOH . E 3 HOH A 12 312 11 HOH HOH . E 3 HOH A 13 313 18 HOH HOH . E 3 HOH A 14 314 40 HOH HOH . E 3 HOH A 15 315 33 HOH HOH . E 3 HOH A 16 316 26 HOH HOH . E 3 HOH A 17 317 23 HOH HOH . E 3 HOH A 18 318 41 HOH HOH . E 3 HOH A 19 319 44 HOH HOH . E 3 HOH A 20 320 37 HOH HOH . E 3 HOH A 21 321 29 HOH HOH . E 3 HOH A 22 322 25 HOH HOH . E 3 HOH A 23 323 46 HOH HOH . E 3 HOH A 24 324 43 HOH HOH . F 3 HOH B 1 301 27 HOH HOH . F 3 HOH B 2 302 4 HOH HOH . F 3 HOH B 3 303 10 HOH HOH . F 3 HOH B 4 304 24 HOH HOH . F 3 HOH B 5 305 2 HOH HOH . F 3 HOH B 6 306 9 HOH HOH . F 3 HOH B 7 307 34 HOH HOH . F 3 HOH B 8 308 35 HOH HOH . F 3 HOH B 9 309 17 HOH HOH . F 3 HOH B 10 310 21 HOH HOH . F 3 HOH B 11 311 38 HOH HOH . F 3 HOH B 12 312 7 HOH HOH . F 3 HOH B 13 313 31 HOH HOH . F 3 HOH B 14 314 8 HOH HOH . F 3 HOH B 15 315 42 HOH HOH . F 3 HOH B 16 316 45 HOH HOH . F 3 HOH B 17 317 32 HOH HOH . F 3 HOH B 18 318 16 HOH HOH . F 3 HOH B 19 319 36 HOH HOH . F 3 HOH B 20 320 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 ZP2 . . . D 2 -2.539 4.712 2.153 0.52 58.18 ? O22 ZP2 201 B 1 HETATM 2 O O17 ZP2 . . . D 2 -0.253 2.135 0.241 0.52 55.27 ? O17 ZP2 201 B 1 HETATM 3 C C11 ZP2 . . . D 2 0.267 6.215 -0.514 0.52 50.76 ? C11 ZP2 201 B 1 HETATM 4 C C02 ZP2 . . . D 2 -0.232 11.156 0.501 0.52 49.35 ? C02 ZP2 201 B 1 HETATM 5 C C03 ZP2 . . . D 2 -0.109 10.954 1.859 0.52 46.21 ? C03 ZP2 201 B 1 HETATM 6 C C04 ZP2 . . . D 2 0.212 9.707 2.354 0.52 49.48 ? C04 ZP2 201 B 1 HETATM 7 C C06 ZP2 . . . D 2 0.414 8.643 1.497 0.52 50.98 ? C06 ZP2 201 B 1 HETATM 8 C C07 ZP2 . . . D 2 0.28 8.837 0.134 0.52 50.52 ? C07 ZP2 201 B 1 HETATM 9 C C08 ZP2 . . . D 2 -0.037 10.095 -0.367 0.52 49.39 ? C08 ZP2 201 B 1 HETATM 10 C C09 ZP2 . . . D 2 0.496 7.693 -0.849 0.52 52.1 ? C09 ZP2 201 B 1 HETATM 11 C C12 ZP2 . . . D 2 1.071 5.275 -1.136 0.52 54.99 ? C12 ZP2 201 B 1 HETATM 12 C C13 ZP2 . . . D 2 0.899 3.924 -0.886 0.52 56.24 ? C13 ZP2 201 B 1 HETATM 13 C C15 ZP2 . . . D 2 3.052 3.034 -1.134 0.52 62.91 ? C15 ZP2 201 B 1 HETATM 14 C C16 ZP2 . . . D 2 -0.08 3.503 -0.012 0.52 54.98 ? C16 ZP2 201 B 1 HETATM 15 C C18 ZP2 . . . D 2 -0.89 4.434 0.606 0.52 55.37 ? C18 ZP2 201 B 1 HETATM 16 C C19 ZP2 . . . D 2 -0.726 5.791 0.356 0.52 50.32 ? C19 ZP2 201 B 1 HETATM 17 F F05 ZP2 . . . D 2 0.332 9.536 3.694 0.52 44.46 ? F05 ZP2 201 B 1 HETATM 18 N N20 ZP2 . . . D 2 -1.904 3.953 1.521 0.52 57.48 ? N20 ZP2 201 B 1 HETATM 19 O O01 ZP2 . . . D 2 -0.559 12.433 0.022 0.52 53.71 ? O01 ZP2 201 B 1 HETATM 20 O O10 ZP2 . . . D 2 0.853 7.974 -1.941 0.52 54.45 ? O10 ZP2 201 B 1 HETATM 21 O O14 ZP2 . . . D 2 1.709 2.974 -1.512 0.52 59.01 ? O14 ZP2 201 B 1 HETATM 22 O O21 ZP2 . . . D 2 -2.11 2.569 1.651 0.52 61.86 -1 O21 ZP2 201 B 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #