data_8PMA # _model_server_result.job_id lohVtMlhtW-q_WsXRnwC4w _model_server_result.datetime_utc '2024-11-27 17:15:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pma # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 8PMA # _exptl.entry_id 8PMA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.231 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3-fluoranyl-5-oxidanyl-phenyl)-(3-methoxy-5-nitro-4-oxidanyl-phenyl)methanone _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PMA _cell.length_a 44.058 _cell.length_b 65.344 _cell.length_c 85.214 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 44.058 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H10 F N O6' _chem_comp.formula_weight 307.231 _chem_comp.id ZP2 _chem_comp.mon_nstd_flag . _chem_comp.name (3-fluoranyl-5-oxidanyl-phenyl)-(3-methoxy-5-nitro-4-oxidanyl-phenyl)methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Pharmacokinetically Improved TTR Binder (PITB)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 O14 ZP2 sing 357 n n O10 C09 ZP2 doub 358 n n O14 C13 ZP2 sing 359 n n C12 C13 ZP2 doub 360 n y C12 C11 ZP2 sing 361 n y C13 C16 ZP2 sing 362 n y C09 C11 ZP2 sing 363 n n C09 C07 ZP2 sing 364 n n C08 C07 ZP2 doub 365 n y C08 C02 ZP2 sing 366 n y C11 C19 ZP2 doub 367 n y O01 C02 ZP2 sing 368 n n C16 O17 ZP2 sing 369 n n C16 C18 ZP2 doub 370 n y C07 C06 ZP2 sing 371 n y C02 C03 ZP2 doub 372 n y C19 C18 ZP2 sing 373 n y C18 N20 ZP2 sing 374 n n O21 N20 ZP2 sing 375 n n N20 O22 ZP2 doub 376 n n C06 C04 ZP2 doub 377 n y C03 C04 ZP2 sing 378 n y C04 F05 ZP2 sing 379 n n O17 H1 ZP2 sing 380 n n C03 H2 ZP2 sing 381 n n C06 H3 ZP2 sing 382 n n C08 H4 ZP2 sing 383 n n C12 H5 ZP2 sing 384 n n C15 H6 ZP2 sing 385 n n C15 H7 ZP2 sing 386 n n C15 H8 ZP2 sing 387 n n C19 H9 ZP2 sing 388 n n O01 H10 ZP2 sing 389 n n # _atom_sites.entry_id 8PMA _atom_sites.fract_transf_matrix[1][1] 0.022697 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011735 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZP2 A 1 201 201 ZP2 ITB . D 2 ZP2 B 1 201 201 ZP2 ITB . E 3 HOH A 1 301 177 HOH HOH . E 3 HOH A 2 302 187 HOH HOH . E 3 HOH A 3 304 63 HOH HOH . E 3 HOH A 4 305 74 HOH HOH . E 3 HOH A 5 306 110 HOH HOH . E 3 HOH A 6 307 141 HOH HOH . E 3 HOH A 7 308 196 HOH HOH . E 3 HOH A 8 309 29 HOH HOH . E 3 HOH A 9 310 94 HOH HOH . E 3 HOH A 10 311 64 HOH HOH . E 3 HOH A 11 312 225 HOH HOH . E 3 HOH A 12 313 149 HOH HOH . E 3 HOH A 13 314 87 HOH HOH . E 3 HOH A 14 315 23 HOH HOH . E 3 HOH A 15 316 129 HOH HOH . E 3 HOH A 16 317 240 HOH HOH . E 3 HOH A 17 318 115 HOH HOH . E 3 HOH A 18 319 192 HOH HOH . E 3 HOH A 19 320 122 HOH HOH . E 3 HOH A 20 321 85 HOH HOH . E 3 HOH A 21 322 118 HOH HOH . E 3 HOH A 22 323 168 HOH HOH . E 3 HOH A 23 324 199 HOH HOH . E 3 HOH A 24 325 93 HOH HOH . E 3 HOH A 25 326 68 HOH HOH . E 3 HOH A 26 327 226 HOH HOH . E 3 HOH A 27 328 88 HOH HOH . E 3 HOH A 28 329 81 HOH HOH . E 3 HOH A 29 330 41 HOH HOH . E 3 HOH A 30 331 53 HOH HOH . E 3 HOH A 31 332 10 HOH HOH . E 3 HOH A 32 333 6 HOH HOH . E 3 HOH A 33 334 31 HOH HOH . E 3 HOH A 34 335 217 HOH HOH . E 3 HOH A 35 336 90 HOH HOH . E 3 HOH A 36 337 201 HOH HOH . E 3 HOH A 37 338 97 HOH HOH . E 3 HOH A 38 339 8 HOH HOH . E 3 HOH A 39 340 2 HOH HOH . E 3 HOH A 40 341 174 HOH HOH . E 3 HOH A 41 342 181 HOH HOH . E 3 HOH A 42 343 26 HOH HOH . E 3 HOH A 43 344 24 HOH HOH . E 3 HOH A 44 345 139 HOH HOH . E 3 HOH A 45 346 4 HOH HOH . E 3 HOH A 46 347 56 HOH HOH . E 3 HOH A 47 348 137 HOH HOH . E 3 HOH A 48 349 80 HOH HOH . E 3 HOH A 49 350 215 HOH HOH . E 3 HOH A 50 351 132 HOH HOH . E 3 HOH A 51 352 13 HOH HOH . E 3 HOH A 52 353 52 HOH HOH . E 3 HOH A 53 354 42 HOH HOH . E 3 HOH A 54 355 164 HOH HOH . E 3 HOH A 55 356 222 HOH HOH . E 3 HOH A 56 357 30 HOH HOH . E 3 HOH A 57 358 48 HOH HOH . E 3 HOH A 58 359 102 HOH HOH . E 3 HOH A 59 360 72 HOH HOH . E 3 HOH A 60 361 176 HOH HOH . E 3 HOH A 61 362 49 HOH HOH . E 3 HOH A 62 363 197 HOH HOH . E 3 HOH A 63 364 69 HOH HOH . E 3 HOH A 64 365 55 HOH HOH . E 3 HOH A 65 366 27 HOH HOH . E 3 HOH A 66 367 169 HOH HOH . E 3 HOH A 67 368 223 HOH HOH . E 3 HOH A 68 369 127 HOH HOH . E 3 HOH A 69 370 119 HOH HOH . E 3 HOH A 70 371 133 HOH HOH . E 3 HOH A 71 372 243 HOH HOH . E 3 HOH A 72 373 184 HOH HOH . E 3 HOH A 73 374 232 HOH HOH . E 3 HOH A 74 375 125 HOH HOH . E 3 HOH A 75 376 160 HOH HOH . E 3 HOH A 76 377 113 HOH HOH . E 3 HOH A 77 378 203 HOH HOH . E 3 HOH A 78 379 104 HOH HOH . E 3 HOH A 79 380 186 HOH HOH . E 3 HOH A 80 381 183 HOH HOH . E 3 HOH A 81 382 59 HOH HOH . E 3 HOH A 82 383 219 HOH HOH . E 3 HOH A 83 384 200 HOH HOH . E 3 HOH A 84 385 84 HOH HOH . E 3 HOH A 85 386 158 HOH HOH . E 3 HOH A 86 387 189 HOH HOH . E 3 HOH A 87 388 131 HOH HOH . E 3 HOH A 88 389 195 HOH HOH . E 3 HOH A 89 390 241 HOH HOH . E 3 HOH A 90 391 156 HOH HOH . E 3 HOH A 91 392 106 HOH HOH . E 3 HOH A 92 393 170 HOH HOH . E 3 HOH A 93 394 70 HOH HOH . E 3 HOH A 94 395 153 HOH HOH . E 3 HOH A 95 396 235 HOH HOH . E 3 HOH A 96 397 28 HOH HOH . E 3 HOH A 97 398 124 HOH HOH . E 3 HOH A 98 399 157 HOH HOH . E 3 HOH A 99 400 123 HOH HOH . E 3 HOH A 100 401 79 HOH HOH . E 3 HOH A 101 402 33 HOH HOH . E 3 HOH A 102 403 159 HOH HOH . E 3 HOH A 103 404 207 HOH HOH . F 3 HOH B 1 301 40 HOH HOH . F 3 HOH B 2 302 73 HOH HOH . F 3 HOH B 3 303 182 HOH HOH . F 3 HOH B 4 304 210 HOH HOH . F 3 HOH B 5 305 83 HOH HOH . F 3 HOH B 6 306 234 HOH HOH . F 3 HOH B 7 307 188 HOH HOH . F 3 HOH B 8 308 65 HOH HOH . F 3 HOH B 9 309 32 HOH HOH . F 3 HOH B 10 310 96 HOH HOH . F 3 HOH B 11 311 142 HOH HOH . F 3 HOH B 12 312 175 HOH HOH . F 3 HOH B 13 313 103 HOH HOH . F 3 HOH B 14 314 167 HOH HOH . F 3 HOH B 15 315 172 HOH HOH . F 3 HOH B 16 316 128 HOH HOH . F 3 HOH B 17 317 76 HOH HOH . F 3 HOH B 18 318 112 HOH HOH . F 3 HOH B 19 319 194 HOH HOH . F 3 HOH B 20 320 47 HOH HOH . F 3 HOH B 21 321 19 HOH HOH . F 3 HOH B 22 322 233 HOH HOH . F 3 HOH B 23 323 57 HOH HOH . F 3 HOH B 24 324 214 HOH HOH . F 3 HOH B 25 325 130 HOH HOH . F 3 HOH B 26 326 178 HOH HOH . F 3 HOH B 27 327 20 HOH HOH . F 3 HOH B 28 328 120 HOH HOH . F 3 HOH B 29 329 58 HOH HOH . F 3 HOH B 30 330 117 HOH HOH . F 3 HOH B 31 331 11 HOH HOH . F 3 HOH B 32 332 185 HOH HOH . F 3 HOH B 33 333 211 HOH HOH . F 3 HOH B 34 334 44 HOH HOH . F 3 HOH B 35 335 152 HOH HOH . F 3 HOH B 36 336 5 HOH HOH . F 3 HOH B 37 337 7 HOH HOH . F 3 HOH B 38 338 16 HOH HOH . F 3 HOH B 39 339 14 HOH HOH . F 3 HOH B 40 340 100 HOH HOH . F 3 HOH B 41 341 134 HOH HOH . F 3 HOH B 42 342 3 HOH HOH . F 3 HOH B 43 343 15 HOH HOH . F 3 HOH B 44 344 22 HOH HOH . F 3 HOH B 45 345 86 HOH HOH . F 3 HOH B 46 346 180 HOH HOH . F 3 HOH B 47 347 21 HOH HOH . F 3 HOH B 48 348 45 HOH HOH . F 3 HOH B 49 349 147 HOH HOH . F 3 HOH B 50 350 18 HOH HOH . F 3 HOH B 51 351 154 HOH HOH . F 3 HOH B 52 352 144 HOH HOH . F 3 HOH B 53 353 1 HOH HOH . F 3 HOH B 54 354 12 HOH HOH . F 3 HOH B 55 355 51 HOH HOH . F 3 HOH B 56 356 35 HOH HOH . F 3 HOH B 57 357 66 HOH HOH . F 3 HOH B 58 358 71 HOH HOH . F 3 HOH B 59 359 9 HOH HOH . F 3 HOH B 60 360 36 HOH HOH . F 3 HOH B 61 361 89 HOH HOH . F 3 HOH B 62 362 75 HOH HOH . F 3 HOH B 63 363 38 HOH HOH . F 3 HOH B 64 364 161 HOH HOH . F 3 HOH B 65 365 43 HOH HOH . F 3 HOH B 66 366 239 HOH HOH . F 3 HOH B 67 367 116 HOH HOH . F 3 HOH B 68 368 17 HOH HOH . F 3 HOH B 69 369 25 HOH HOH . F 3 HOH B 70 370 82 HOH HOH . F 3 HOH B 71 371 229 HOH HOH . F 3 HOH B 72 372 213 HOH HOH . F 3 HOH B 73 373 162 HOH HOH . F 3 HOH B 74 374 191 HOH HOH . F 3 HOH B 75 375 145 HOH HOH . F 3 HOH B 76 376 205 HOH HOH . F 3 HOH B 77 377 39 HOH HOH . F 3 HOH B 78 378 54 HOH HOH . F 3 HOH B 79 379 67 HOH HOH . F 3 HOH B 80 380 179 HOH HOH . F 3 HOH B 81 381 244 HOH HOH . F 3 HOH B 82 382 126 HOH HOH . F 3 HOH B 83 383 34 HOH HOH . F 3 HOH B 84 384 148 HOH HOH . F 3 HOH B 85 385 98 HOH HOH . F 3 HOH B 86 386 61 HOH HOH . F 3 HOH B 87 387 228 HOH HOH . F 3 HOH B 88 388 121 HOH HOH . F 3 HOH B 89 389 91 HOH HOH . F 3 HOH B 90 390 165 HOH HOH . F 3 HOH B 91 391 238 HOH HOH . F 3 HOH B 92 392 136 HOH HOH . F 3 HOH B 93 393 50 HOH HOH . F 3 HOH B 94 394 155 HOH HOH . F 3 HOH B 95 395 92 HOH HOH . F 3 HOH B 96 396 227 HOH HOH . F 3 HOH B 97 397 101 HOH HOH . F 3 HOH B 98 398 230 HOH HOH . F 3 HOH B 99 399 107 HOH HOH . F 3 HOH B 100 400 77 HOH HOH . F 3 HOH B 101 401 212 HOH HOH . F 3 HOH B 102 402 146 HOH HOH . F 3 HOH B 103 403 46 HOH HOH . F 3 HOH B 104 404 140 HOH HOH . F 3 HOH B 105 405 99 HOH HOH . F 3 HOH B 106 406 231 HOH HOH . F 3 HOH B 107 407 202 HOH HOH . F 3 HOH B 108 408 114 HOH HOH . F 3 HOH B 109 409 190 HOH HOH . F 3 HOH B 110 410 62 HOH HOH . F 3 HOH B 111 411 150 HOH HOH . F 3 HOH B 112 412 60 HOH HOH . F 3 HOH B 113 413 95 HOH HOH . F 3 HOH B 114 414 135 HOH HOH . F 3 HOH B 115 415 78 HOH HOH . F 3 HOH B 116 416 111 HOH HOH . F 3 HOH B 117 417 151 HOH HOH . F 3 HOH B 118 418 105 HOH HOH . F 3 HOH B 119 419 109 HOH HOH . F 3 HOH B 120 420 224 HOH HOH . F 3 HOH B 121 421 242 HOH HOH . F 3 HOH B 122 422 236 HOH HOH . F 3 HOH B 123 423 173 HOH HOH . F 3 HOH B 124 424 198 HOH HOH . F 3 HOH B 125 425 237 HOH HOH . F 3 HOH B 126 426 193 HOH HOH . F 3 HOH B 127 427 171 HOH HOH . F 3 HOH B 128 428 221 HOH HOH . F 3 HOH B 129 429 206 HOH HOH . F 3 HOH B 130 430 143 HOH HOH . F 3 HOH B 131 431 138 HOH HOH . F 3 HOH B 132 432 204 HOH HOH . F 3 HOH B 133 433 218 HOH HOH . F 3 HOH B 134 434 37 HOH HOH . F 3 HOH B 135 435 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 ZP2 . . . D 2 19.427 -5.078 -2.089 0.55 38.52 ? O22 ZP2 201 B 1 HETATM 2 O O17 ZP2 . . . D 2 21.813 -2.462 -0.295 0.55 33.44 ? O17 ZP2 201 B 1 HETATM 3 C C11 ZP2 . . . D 2 22.366 -6.534 0.411 0.55 26.66 ? C11 ZP2 201 B 1 HETATM 4 C C02 ZP2 . . . D 2 21.742 -11.441 -0.647 0.55 20.54 ? C02 ZP2 201 B 1 HETATM 5 C C03 ZP2 . . . D 2 21.755 -11.217 -2.008 0.55 20.96 ? C03 ZP2 201 B 1 HETATM 6 C C04 ZP2 . . . D 2 22.047 -9.964 -2.499 0.55 22.02 ? C04 ZP2 201 B 1 HETATM 7 C C06 ZP2 . . . D 2 22.329 -8.92 -1.639 0.55 19.17 ? C06 ZP2 201 B 1 HETATM 8 C C07 ZP2 . . . D 2 22.302 -9.135 -0.269 0.55 21.68 ? C07 ZP2 201 B 1 HETATM 9 C C08 ZP2 . . . D 2 22.018 -10.399 0.221 0.55 18.3 ? C08 ZP2 201 B 1 HETATM 10 C C09 ZP2 . . . D 2 22.611 -8.009 0.715 0.55 25.19 ? C09 ZP2 201 B 1 HETATM 11 C C12 ZP2 . . . D 2 23.202 -5.604 0.999 0.55 33.86 ? C12 ZP2 201 B 1 HETATM 12 C C13 ZP2 . . . D 2 23.027 -4.252 0.768 0.55 34.28 ? C13 ZP2 201 B 1 HETATM 13 C C15 ZP2 . . . D 2 24.695 -3.815 2.384 0.55 38.92 ? C15 ZP2 201 B 1 HETATM 14 C C16 ZP2 . . . D 2 22 -3.827 -0.055 0.55 32.47 ? C16 ZP2 201 B 1 HETATM 15 C C18 ZP2 . . . D 2 21.157 -4.753 -0.643 0.55 31.4 ? C18 ZP2 201 B 1 HETATM 16 C C19 ZP2 . . . D 2 21.333 -6.107 -0.406 0.55 30.64 ? C19 ZP2 201 B 1 HETATM 17 F F05 ZP2 . . . D 2 22.053 -9.772 -3.845 0.55 22.73 ? F05 ZP2 201 B 1 HETATM 18 N N20 ZP2 . . . D 2 20.079 -4.298 -1.501 0.55 36.4 ? N20 ZP2 201 B 1 HETATM 19 O O01 ZP2 . . . D 2 21.448 -12.721 -0.165 0.55 25.79 ? O01 ZP2 201 B 1 HETATM 20 O O10 ZP2 . . . D 2 23.066 -8.289 1.77 0.55 25.98 ? O10 ZP2 201 B 1 HETATM 21 O O14 ZP2 . . . D 2 23.883 -3.314 1.359 0.55 37.93 ? O14 ZP2 201 B 1 HETATM 22 O O21 ZP2 . . . D 2 19.816 -2.927 -1.627 0.55 41.06 -1 O21 ZP2 201 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 22 #