data_8PMJ # _model_server_result.job_id 6oLHeOeCLrvNSD1Ql_v0kA _model_server_result.datetime_utc '2025-03-04 09:35:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pmj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1502}' # _entry.id 8PMJ # _exptl.entry_id 8PMJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PMJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PMJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 462 A SER 462 1_555 J MG MG . A MG 1509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc2 A OE1 GLN 503 A GLN 503 1_555 J MG MG . A MG 1509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc3 A OG SER 1120 A SER 1120 1_555 I MG MG . A MG 1508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc4 A OE1 GLN 1161 A GLN 1161 1_555 I MG MG . A MG 1508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc5 B O3G ATP . A ATP 1501 1_555 J MG MG . A MG 1509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc6 G O3B ADP . A ADP 1506 1_555 H V VO4 . A VO4 1507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc7 G O1B ADP . A ADP 1506 1_555 I MG MG . A MG 1508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc8 H O1 VO4 . A VO4 1507 1_555 I MG MG . A MG 1508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc9 I MG MG . A MG 1508 1_555 K O HOH . A HOH 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc10 J MG MG . A MG 1509 1_555 K O HOH . A HOH 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc11 J MG MG . A MG 1509 1_555 K O HOH . A HOH 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 163 n n C1 C10 CLR sing 164 n n C1 H11 CLR sing 165 n n C1 H12 CLR sing 166 n n C2 C3 CLR sing 167 n n C2 H21 CLR sing 168 n n C2 H22 CLR sing 169 n n C3 C4 CLR sing 170 n n C3 O1 CLR sing 171 n n C3 H3 CLR sing 172 n n C4 C5 CLR sing 173 n n C4 H41 CLR sing 174 n n C4 H42 CLR sing 175 n n C5 C6 CLR doub 176 n n C5 C10 CLR sing 177 n n C6 C7 CLR sing 178 n n C6 H6 CLR sing 179 n n C7 C8 CLR sing 180 n n C7 H71 CLR sing 181 n n C7 H72 CLR sing 182 n n C8 C9 CLR sing 183 n n C8 C14 CLR sing 184 n n C8 H8 CLR sing 185 n n C9 C10 CLR sing 186 n n C9 C11 CLR sing 187 n n C9 H9 CLR sing 188 n n C10 C19 CLR sing 189 n n C11 C12 CLR sing 190 n n C11 H111 CLR sing 191 n n C11 H112 CLR sing 192 n n C12 C13 CLR sing 193 n n C12 H121 CLR sing 194 n n C12 H122 CLR sing 195 n n C13 C14 CLR sing 196 n n C13 C17 CLR sing 197 n n C13 C18 CLR sing 198 n n C14 C15 CLR sing 199 n n C14 H14 CLR sing 200 n n C15 C16 CLR sing 201 n n C15 H151 CLR sing 202 n n C15 H152 CLR sing 203 n n C16 C17 CLR sing 204 n n C16 H161 CLR sing 205 n n C16 H162 CLR sing 206 n n C17 C20 CLR sing 207 n n C17 H17 CLR sing 208 n n C18 H181 CLR sing 209 n n C18 H182 CLR sing 210 n n C18 H183 CLR sing 211 n n C19 H191 CLR sing 212 n n C19 H192 CLR sing 213 n n C19 H193 CLR sing 214 n n C20 C21 CLR sing 215 n n C20 C22 CLR sing 216 n n C20 H20 CLR sing 217 n n C21 H211 CLR sing 218 n n C21 H212 CLR sing 219 n n C21 H213 CLR sing 220 n n C22 C23 CLR sing 221 n n C22 H221 CLR sing 222 n n C22 H222 CLR sing 223 n n C23 C24 CLR sing 224 n n C23 H231 CLR sing 225 n n C23 H232 CLR sing 226 n n C24 C25 CLR sing 227 n n C24 H241 CLR sing 228 n n C24 H242 CLR sing 229 n n C25 C26 CLR sing 230 n n C25 C27 CLR sing 231 n n C25 H25 CLR sing 232 n n C26 H261 CLR sing 233 n n C26 H262 CLR sing 234 n n C26 H263 CLR sing 235 n n C27 H271 CLR sing 236 n n C27 H272 CLR sing 237 n n C27 H273 CLR sing 238 n n O1 H1 CLR sing 239 n n # _atom_sites.entry_id 8PMJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1501 1501 ATP ATP . C 3 CLR A 1 1502 1601 CLR CLR . D 3 CLR A 1 1503 1701 CLR CLR . E 3 CLR A 1 1504 1801 CLR CLR . F 3 CLR A 1 1505 1901 CLR CLR . G 4 ADP A 1 1506 1902 ADP ADP . H 5 VO4 A 1 1507 1903 VO4 VO4 . I 6 MG A 1 1508 1303 MG MG . J 6 MG A 1 1509 1 MG MG . K 7 HOH A 1 1601 3 HOH HOH . K 7 HOH A 2 1602 1 HOH HOH . K 7 HOH A 3 1603 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . C 3 140.431 139.44 107.326 1 35.86 ? C1 CLR 1502 A 1 HETATM 2 C C2 CLR . . . C 3 139.946 140.751 106.724 1 35.67 ? C2 CLR 1502 A 1 HETATM 3 C C3 CLR . . . C 3 139.08 140.476 105.514 1 35.68 ? C3 CLR 1502 A 1 HETATM 4 C C4 CLR . . . C 3 137.876 139.64 105.941 1 35.55 ? C4 CLR 1502 A 1 HETATM 5 C C5 CLR . . . C 3 138.289 138.357 106.614 1 35.66 ? C5 CLR 1502 A 1 HETATM 6 C C6 CLR . . . C 3 137.692 137.209 106.296 1 35.52 ? C6 CLR 1502 A 1 HETATM 7 C C7 CLR . . . C 3 138.019 135.879 106.889 1 35.41 ? C7 CLR 1502 A 1 HETATM 8 C C8 CLR . . . C 3 138.898 135.966 108.135 1 35.57 ? C8 CLR 1502 A 1 HETATM 9 C C9 CLR . . . C 3 139.951 137.068 107.966 1 35.74 ? C9 CLR 1502 A 1 HETATM 10 C C10 CLR . . . C 3 139.311 138.458 107.733 1 35.74 ? C10 CLR 1502 A 1 HETATM 11 C C11 CLR . . . C 3 140.971 137.058 109.109 1 35.6 ? C11 CLR 1502 A 1 HETATM 12 C C12 CLR . . . C 3 141.586 135.681 109.365 1 35.62 ? C12 CLR 1502 A 1 HETATM 13 C C13 CLR . . . C 3 140.511 134.627 109.632 1 35.4 ? C13 CLR 1502 A 1 HETATM 14 C C14 CLR . . . C 3 139.59 134.64 108.402 1 35.5 ? C14 CLR 1502 A 1 HETATM 15 C C15 CLR . . . C 3 138.733 133.391 108.552 1 35.78 ? C15 CLR 1502 A 1 HETATM 16 C C16 CLR . . . C 3 139.687 132.372 109.203 1 35.75 ? C16 CLR 1502 A 1 HETATM 17 C C17 CLR . . . C 3 140.966 133.144 109.632 1 35.57 ? C17 CLR 1502 A 1 HETATM 18 C C18 CLR . . . C 3 139.757 134.936 110.929 1 35.71 ? C18 CLR 1502 A 1 HETATM 19 C C19 CLR . . . C 3 138.604 138.972 108.995 1 35.32 ? C19 CLR 1502 A 1 HETATM 20 C C20 CLR . . . C 3 141.601 132.558 110.903 1 35.45 ? C20 CLR 1502 A 1 HETATM 21 C C21 CLR . . . C 3 143.064 132.951 111.084 1 35.55 ? C21 CLR 1502 A 1 HETATM 22 C C22 CLR . . . C 3 141.465 131.029 110.917 1 35.6 ? C22 CLR 1502 A 1 HETATM 23 C C23 CLR . . . C 3 142.317 130.322 111.965 1 35.8 ? C23 CLR 1502 A 1 HETATM 24 C C24 CLR . . . C 3 142.05 128.823 112.02 1 36.13 ? C24 CLR 1502 A 1 HETATM 25 C C25 CLR . . . C 3 142.769 128.078 113.146 1 36.03 ? C25 CLR 1502 A 1 HETATM 26 C C26 CLR . . . C 3 144.229 127.839 112.771 1 36.09 ? C26 CLR 1502 A 1 HETATM 27 C C27 CLR . . . C 3 142.691 128.831 114.47 1 36.39 ? C27 CLR 1502 A 1 HETATM 28 O O1 CLR . . . C 3 138.702 141.71 104.941 1 35.73 ? O1 CLR 1502 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #