data_8PMO
#
_model_server_result.job_id            HLPz2CjsaB4JTyl0agaSDA 
_model_server_result.datetime_utc      '2024-10-11 03:20:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pmo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    8PMO 
#
_exptl.entry_id    8PMO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              307.231 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3-fluoranyl-5-oxidanyl-phenyl)-(3-methoxy-5-nitro-4-oxidanyl-phenyl)methanone 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PMO 
_cell.length_a            83.406 
_cell.length_b            43.782 
_cell.length_c            66.045 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PMO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 43.782 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C14 H10 F N O6' 
_chem_comp.formula_weight    307.231 
_chem_comp.id                ZP2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3-fluoranyl-5-oxidanyl-phenyl)-(3-methoxy-5-nitro-4-oxidanyl-phenyl)methanone 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Pharmacokinetically Improved TTR Binder (PITB)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 O14 ZP2 sing 357 n n 
O10 C09 ZP2 doub 358 n n 
O14 C13 ZP2 sing 359 n n 
C12 C13 ZP2 doub 360 n y 
C12 C11 ZP2 sing 361 n y 
C13 C16 ZP2 sing 362 n y 
C09 C11 ZP2 sing 363 n n 
C09 C07 ZP2 sing 364 n n 
C08 C07 ZP2 doub 365 n y 
C08 C02 ZP2 sing 366 n y 
C11 C19 ZP2 doub 367 n y 
O01 C02 ZP2 sing 368 n n 
C16 O17 ZP2 sing 369 n n 
C16 C18 ZP2 doub 370 n y 
C07 C06 ZP2 sing 371 n y 
C02 C03 ZP2 doub 372 n y 
C19 C18 ZP2 sing 373 n y 
C18 N20 ZP2 sing 374 n n 
O21 N20 ZP2 sing 375 n n 
N20 O22 ZP2 doub 376 n n 
C06 C04 ZP2 doub 377 n y 
C03 C04 ZP2 sing 378 n y 
C04 F05 ZP2 sing 379 n n 
O17 H1 ZP2 sing 380 n n 
C03 H2 ZP2 sing 381 n n 
C06 H3 ZP2 sing 382 n n 
C08 H4 ZP2 sing 383 n n 
C12 H5 ZP2 sing 384 n n 
C15 H6 ZP2 sing 385 n n 
C15 H7 ZP2 sing 386 n n 
C15 H8 ZP2 sing 387 n n 
C19 H9 ZP2 sing 388 n n 
O01 H10 ZP2 sing 389 n n 
#
_atom_sites.entry_id                     8PMO 
_atom_sites.fract_transf_matrix[1][1]    0.01199 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02284 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015141 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZP2 A 1 201 201 ZP2 ITB . 
D 2 ZP2 B 1 201 201 ZP2 ITB . 
E 3 HOH A 1 301 130 HOH HOH . 
E 3 HOH A 2 302 54 HOH HOH . 
E 3 HOH A 3 303 45 HOH HOH . 
E 3 HOH A 4 304 108 HOH HOH . 
E 3 HOH A 5 305 23 HOH HOH . 
E 3 HOH A 6 306 160 HOH HOH . 
E 3 HOH A 7 307 97 HOH HOH . 
E 3 HOH A 8 308 133 HOH HOH . 
E 3 HOH A 9 309 161 HOH HOH . 
E 3 HOH A 10 310 141 HOH HOH . 
E 3 HOH A 11 311 195 HOH HOH . 
E 3 HOH A 12 312 210 HOH HOH . 
E 3 HOH A 13 313 203 HOH HOH . 
E 3 HOH A 14 314 230 HOH HOH . 
E 3 HOH A 15 315 200 HOH HOH . 
E 3 HOH A 16 316 94 HOH HOH . 
E 3 HOH A 17 317 32 HOH HOH . 
E 3 HOH A 18 318 58 HOH HOH . 
E 3 HOH A 19 320 162 HOH HOH . 
E 3 HOH A 20 321 83 HOH HOH . 
E 3 HOH A 21 322 98 HOH HOH . 
E 3 HOH A 22 323 107 HOH HOH . 
E 3 HOH A 23 324 129 HOH HOH . 
E 3 HOH A 24 325 46 HOH HOH . 
E 3 HOH A 25 326 205 HOH HOH . 
E 3 HOH A 26 327 92 HOH HOH . 
E 3 HOH A 27 328 16 HOH HOH . 
E 3 HOH A 28 329 7 HOH HOH . 
E 3 HOH A 29 330 14 HOH HOH . 
E 3 HOH A 30 331 19 HOH HOH . 
E 3 HOH A 31 332 89 HOH HOH . 
E 3 HOH A 32 333 95 HOH HOH . 
E 3 HOH A 33 334 226 HOH HOH . 
E 3 HOH A 34 335 164 HOH HOH . 
E 3 HOH A 35 336 5 HOH HOH . 
E 3 HOH A 36 337 143 HOH HOH . 
E 3 HOH A 37 338 142 HOH HOH . 
E 3 HOH A 38 339 131 HOH HOH . 
E 3 HOH A 39 340 90 HOH HOH . 
E 3 HOH A 40 341 103 HOH HOH . 
E 3 HOH A 41 342 2 HOH HOH . 
E 3 HOH A 42 343 20 HOH HOH . 
E 3 HOH A 43 344 57 HOH HOH . 
E 3 HOH A 44 345 71 HOH HOH . 
E 3 HOH A 45 346 8 HOH HOH . 
E 3 HOH A 46 347 152 HOH HOH . 
E 3 HOH A 47 348 105 HOH HOH . 
E 3 HOH A 48 349 29 HOH HOH . 
E 3 HOH A 49 350 10 HOH HOH . 
E 3 HOH A 50 351 72 HOH HOH . 
E 3 HOH A 51 352 79 HOH HOH . 
E 3 HOH A 52 353 209 HOH HOH . 
E 3 HOH A 53 354 109 HOH HOH . 
E 3 HOH A 54 355 36 HOH HOH . 
E 3 HOH A 55 356 62 HOH HOH . 
E 3 HOH A 56 357 233 HOH HOH . 
E 3 HOH A 57 358 91 HOH HOH . 
E 3 HOH A 58 359 111 HOH HOH . 
E 3 HOH A 59 360 184 HOH HOH . 
E 3 HOH A 60 361 225 HOH HOH . 
E 3 HOH A 61 362 60 HOH HOH . 
E 3 HOH A 62 363 217 HOH HOH . 
E 3 HOH A 63 364 76 HOH HOH . 
E 3 HOH A 64 365 85 HOH HOH . 
E 3 HOH A 65 366 102 HOH HOH . 
E 3 HOH A 66 367 84 HOH HOH . 
E 3 HOH A 67 368 182 HOH HOH . 
E 3 HOH A 68 369 153 HOH HOH . 
E 3 HOH A 69 370 218 HOH HOH . 
E 3 HOH A 70 371 87 HOH HOH . 
E 3 HOH A 71 372 37 HOH HOH . 
E 3 HOH A 72 373 213 HOH HOH . 
E 3 HOH A 73 374 132 HOH HOH . 
E 3 HOH A 74 375 53 HOH HOH . 
E 3 HOH A 75 376 77 HOH HOH . 
E 3 HOH A 76 377 214 HOH HOH . 
E 3 HOH A 77 378 183 HOH HOH . 
E 3 HOH A 78 379 170 HOH HOH . 
E 3 HOH A 79 380 190 HOH HOH . 
E 3 HOH A 80 381 101 HOH HOH . 
E 3 HOH A 81 382 201 HOH HOH . 
E 3 HOH A 82 383 25 HOH HOH . 
E 3 HOH A 83 384 228 HOH HOH . 
E 3 HOH A 84 385 64 HOH HOH . 
E 3 HOH A 85 386 224 HOH HOH . 
E 3 HOH A 86 387 120 HOH HOH . 
E 3 HOH A 87 388 206 HOH HOH . 
E 3 HOH A 88 389 128 HOH HOH . 
E 3 HOH A 89 390 216 HOH HOH . 
E 3 HOH A 90 391 155 HOH HOH . 
E 3 HOH A 91 392 126 HOH HOH . 
E 3 HOH A 92 393 187 HOH HOH . 
E 3 HOH A 93 394 168 HOH HOH . 
E 3 HOH A 94 395 33 HOH HOH . 
E 3 HOH A 95 396 112 HOH HOH . 
E 3 HOH A 96 397 150 HOH HOH . 
E 3 HOH A 97 398 185 HOH HOH . 
E 3 HOH A 98 399 34 HOH HOH . 
E 3 HOH A 99 400 49 HOH HOH . 
E 3 HOH A 100 401 219 HOH HOH . 
F 3 HOH B 1 301 140 HOH HOH . 
F 3 HOH B 2 302 15 HOH HOH . 
F 3 HOH B 3 303 75 HOH HOH . 
F 3 HOH B 4 304 74 HOH HOH . 
F 3 HOH B 5 305 123 HOH HOH . 
F 3 HOH B 6 306 177 HOH HOH . 
F 3 HOH B 7 307 157 HOH HOH . 
F 3 HOH B 8 308 156 HOH HOH . 
F 3 HOH B 9 309 124 HOH HOH . 
F 3 HOH B 10 310 50 HOH HOH . 
F 3 HOH B 11 311 223 HOH HOH . 
F 3 HOH B 12 312 139 HOH HOH . 
F 3 HOH B 13 313 121 HOH HOH . 
F 3 HOH B 14 314 135 HOH HOH . 
F 3 HOH B 15 315 227 HOH HOH . 
F 3 HOH B 16 316 122 HOH HOH . 
F 3 HOH B 17 317 38 HOH HOH . 
F 3 HOH B 18 318 44 HOH HOH . 
F 3 HOH B 19 319 146 HOH HOH . 
F 3 HOH B 20 320 30 HOH HOH . 
F 3 HOH B 21 321 149 HOH HOH . 
F 3 HOH B 22 322 196 HOH HOH . 
F 3 HOH B 23 323 11 HOH HOH . 
F 3 HOH B 24 324 43 HOH HOH . 
F 3 HOH B 25 325 221 HOH HOH . 
F 3 HOH B 26 326 78 HOH HOH . 
F 3 HOH B 27 327 110 HOH HOH . 
F 3 HOH B 28 328 24 HOH HOH . 
F 3 HOH B 29 329 12 HOH HOH . 
F 3 HOH B 30 330 65 HOH HOH . 
F 3 HOH B 31 331 88 HOH HOH . 
F 3 HOH B 32 332 137 HOH HOH . 
F 3 HOH B 33 333 159 HOH HOH . 
F 3 HOH B 34 334 67 HOH HOH . 
F 3 HOH B 35 335 4 HOH HOH . 
F 3 HOH B 36 336 69 HOH HOH . 
F 3 HOH B 37 337 172 HOH HOH . 
F 3 HOH B 38 338 1 HOH HOH . 
F 3 HOH B 39 339 151 HOH HOH . 
F 3 HOH B 40 340 56 HOH HOH . 
F 3 HOH B 41 341 3 HOH HOH . 
F 3 HOH B 42 342 179 HOH HOH . 
F 3 HOH B 43 343 21 HOH HOH . 
F 3 HOH B 44 344 59 HOH HOH . 
F 3 HOH B 45 345 106 HOH HOH . 
F 3 HOH B 46 346 17 HOH HOH . 
F 3 HOH B 47 347 207 HOH HOH . 
F 3 HOH B 48 348 51 HOH HOH . 
F 3 HOH B 49 349 73 HOH HOH . 
F 3 HOH B 50 350 48 HOH HOH . 
F 3 HOH B 51 351 27 HOH HOH . 
F 3 HOH B 52 352 41 HOH HOH . 
F 3 HOH B 53 353 40 HOH HOH . 
F 3 HOH B 54 354 6 HOH HOH . 
F 3 HOH B 55 355 22 HOH HOH . 
F 3 HOH B 56 356 9 HOH HOH . 
F 3 HOH B 57 357 28 HOH HOH . 
F 3 HOH B 58 358 198 HOH HOH . 
F 3 HOH B 59 359 13 HOH HOH . 
F 3 HOH B 60 360 63 HOH HOH . 
F 3 HOH B 61 361 191 HOH HOH . 
F 3 HOH B 62 362 86 HOH HOH . 
F 3 HOH B 63 363 18 HOH HOH . 
F 3 HOH B 64 364 119 HOH HOH . 
F 3 HOH B 65 365 68 HOH HOH . 
F 3 HOH B 66 366 222 HOH HOH . 
F 3 HOH B 67 367 39 HOH HOH . 
F 3 HOH B 68 368 31 HOH HOH . 
F 3 HOH B 69 369 173 HOH HOH . 
F 3 HOH B 70 370 125 HOH HOH . 
F 3 HOH B 71 371 188 HOH HOH . 
F 3 HOH B 72 372 104 HOH HOH . 
F 3 HOH B 73 373 114 HOH HOH . 
F 3 HOH B 74 374 96 HOH HOH . 
F 3 HOH B 75 375 42 HOH HOH . 
F 3 HOH B 76 376 171 HOH HOH . 
F 3 HOH B 77 377 55 HOH HOH . 
F 3 HOH B 78 378 166 HOH HOH . 
F 3 HOH B 79 379 231 HOH HOH . 
F 3 HOH B 80 380 35 HOH HOH . 
F 3 HOH B 81 381 175 HOH HOH . 
F 3 HOH B 82 382 116 HOH HOH . 
F 3 HOH B 83 383 117 HOH HOH . 
F 3 HOH B 84 384 70 HOH HOH . 
F 3 HOH B 85 385 61 HOH HOH . 
F 3 HOH B 86 386 52 HOH HOH . 
F 3 HOH B 87 387 134 HOH HOH . 
F 3 HOH B 88 388 82 HOH HOH . 
F 3 HOH B 89 389 145 HOH HOH . 
F 3 HOH B 90 390 212 HOH HOH . 
F 3 HOH B 91 391 47 HOH HOH . 
F 3 HOH B 92 392 229 HOH HOH . 
F 3 HOH B 93 393 127 HOH HOH . 
F 3 HOH B 94 394 174 HOH HOH . 
F 3 HOH B 95 395 80 HOH HOH . 
F 3 HOH B 96 396 181 HOH HOH . 
F 3 HOH B 97 397 115 HOH HOH . 
F 3 HOH B 98 398 148 HOH HOH . 
F 3 HOH B 99 399 118 HOH HOH . 
F 3 HOH B 100 400 158 HOH HOH . 
F 3 HOH B 101 401 81 HOH HOH . 
F 3 HOH B 102 402 186 HOH HOH . 
F 3 HOH B 103 403 176 HOH HOH . 
F 3 HOH B 104 404 147 HOH HOH . 
F 3 HOH B 105 405 93 HOH HOH . 
F 3 HOH B 106 406 100 HOH HOH . 
F 3 HOH B 107 407 165 HOH HOH . 
F 3 HOH B 108 408 136 HOH HOH . 
F 3 HOH B 109 409 169 HOH HOH . 
F 3 HOH B 110 410 215 HOH HOH . 
F 3 HOH B 111 411 99 HOH HOH . 
F 3 HOH B 112 412 26 HOH HOH . 
F 3 HOH B 113 413 66 HOH HOH . 
F 3 HOH B 114 414 193 HOH HOH . 
F 3 HOH B 115 415 192 HOH HOH . 
F 3 HOH B 116 416 138 HOH HOH . 
F 3 HOH B 117 417 144 HOH HOH . 
F 3 HOH B 118 418 167 HOH HOH . 
F 3 HOH B 119 419 211 HOH HOH . 
F 3 HOH B 120 420 220 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O22 ZP2 . . . D 2 -2.236 19.366 -5.136 0.48 37.93 ? O22 ZP2 201 B 1 
HETATM 2 O O17 ZP2 . . . D 2 -0.295 21.477 -2.425 0.48 31.63 ? O17 ZP2 201 B 1 
HETATM 3 C C11 ZP2 . . . D 2 0.459 22.198 -6.476 0.48 31.22 ? C11 ZP2 201 B 1 
HETATM 4 C C02 ZP2 . . . D 2 -0.557 21.694 -11.424 0.48 16.98 ? C02 ZP2 201 B 1 
HETATM 5 C C03 ZP2 . . . D 2 -1.908 21.685 -11.209 0.48 17.1 ? C03 ZP2 201 B 1 
HETATM 6 C C04 ZP2 . . . D 2 -2.406 21.95 -9.954 0.48 20.09 ? C04 ZP2 201 B 1 
HETATM 7 C C06 ZP2 . . . D 2 -1.566 22.214 -8.894 0.48 21.9 ? C06 ZP2 201 B 1 
HETATM 8 C C07 ZP2 . . . D 2 -0.196 22.203 -9.098 0.48 23.82 ? C07 ZP2 201 B 1 
HETATM 9 C C08 ZP2 . . . D 2 0.303 21.946 -10.37 0.48 18.51 ? C08 ZP2 201 B 1 
HETATM 10 C C09 ZP2 . . . D 2 0.771 22.487 -7.95 0.48 28.44 ? C09 ZP2 201 B 1 
HETATM 11 C C12 ZP2 . . . D 2 1.076 22.96 -5.497 0.48 35.31 ? C12 ZP2 201 B 1 
HETATM 12 C C13 ZP2 . . . D 2 0.825 22.727 -4.154 0.48 34.25 ? C13 ZP2 201 B 1 
HETATM 13 C C15 ZP2 . . . D 2 1.196 24.873 -3.266 0.48 39.66 ? C15 ZP2 201 B 1 
HETATM 14 C C16 ZP2 . . . D 2 -0.041 21.721 -3.779 0.48 32.53 ? C16 ZP2 201 B 1 
HETATM 15 C C18 ZP2 . . . D 2 -0.654 20.953 -4.746 0.48 34.26 ? C18 ZP2 201 B 1 
HETATM 16 C C19 ZP2 . . . D 2 -0.404 21.187 -6.089 0.48 32.52 ? C19 ZP2 201 B 1 
HETATM 17 F F05 ZP2 . . . D 2 -3.743 21.941 -9.774 0.48 18.85 ? F05 ZP2 201 B 1 
HETATM 18 N N20 ZP2 . . . D 2 -1.556 19.896 -4.34 0.48 35.74 ? N20 ZP2 201 B 1 
HETATM 19 O O01 ZP2 . . . D 2 -0.076 21.421 -12.709 0.48 26.11 ? O01 ZP2 201 B 1 
HETATM 20 O O10 ZP2 . . . D 2 1.824 22.945 -8.221 0.48 26.58 ? O10 ZP2 201 B 1 
HETATM 21 O O14 ZP2 . . . D 2 1.445 23.501 -3.171 0.48 37.37 ? O14 ZP2 201 B 1 
HETATM 22 O O21 ZP2 . . . D 2 -1.609 19.503 -2.994 0.48 39.48 -1 O21 ZP2 201 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#