data_8PMP
#
_model_server_result.job_id            ZfrcCQcOSm5MWnhl_ltqoA 
_model_server_result.datetime_utc      '2025-03-06 06:43:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pmp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    8PMP 
#
_exptl.entry_id    8PMP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              539.223 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PMP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PMP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H20 N5 O14 P3' 
_chem_comp.formula_weight    539.223 
_chem_comp.id                MGT 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G MGT doub 235 n n 
PG O2G MGT sing 236 n n 
PG O3G MGT sing 237 n n 
PG O3B MGT sing 238 n n 
O2G HOG2 MGT sing 239 n n 
O3G HOG3 MGT sing 240 n n 
O3B PB MGT sing 241 n n 
PB O1B MGT doub 242 n n 
PB O2B MGT sing 243 n n 
PB O3A MGT sing 244 n n 
O2B HOB2 MGT sing 245 n n 
O3A PA MGT sing 246 n n 
PA O1A MGT doub 247 n n 
PA O2A MGT sing 248 n n 
PA O5' MGT sing 249 n n 
O2A HOA2 MGT sing 250 n n 
O5' C5' MGT sing 251 n n 
C5' C4' MGT sing 252 n n 
C5' "H5'1" MGT sing 253 n n 
C5' "H5'2" MGT sing 254 n n 
C4' O4' MGT sing 255 n n 
C4' C3' MGT sing 256 n n 
C4' H4' MGT sing 257 n n 
O4' C1' MGT sing 258 n n 
C3' O3' MGT sing 259 n n 
C3' C2' MGT sing 260 n n 
C3' H3' MGT sing 261 n n 
O3' HO3' MGT sing 262 n n 
C2' O2' MGT sing 263 n n 
C2' C1' MGT sing 264 n n 
C2' H2' MGT sing 265 n n 
O2' HO2' MGT sing 266 n n 
C1' N9 MGT sing 267 n n 
C1' H1' MGT sing 268 n n 
N9 C8 MGT sing 269 n n 
N9 C4 MGT sing 270 n n 
C8 N7 MGT sing 271 n n 
C8 H81 MGT sing 272 n n 
C8 H82 MGT sing 273 n n 
N7 CM7 MGT sing 274 n n 
N7 C5 MGT sing 275 n n 
CM7 HM71 MGT sing 276 n n 
CM7 HM72 MGT sing 277 n n 
CM7 HM73 MGT sing 278 n n 
C5 C6 MGT sing 279 n n 
C5 C4 MGT doub 280 n n 
C6 O6 MGT doub 281 n n 
C6 N1 MGT sing 282 n n 
N1 C2 MGT sing 283 n n 
N1 HN1 MGT sing 284 n n 
C2 N2 MGT sing 285 n n 
C2 N3 MGT doub 286 n n 
N2 HN21 MGT sing 287 n n 
N2 HN22 MGT sing 288 n n 
N3 C4 MGT sing 289 n n 
#
_atom_sites.entry_id                     8PMP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          D 
_pdbx_nonpoly_scheme.entity_id        4 
_pdbx_nonpoly_scheme.mon_id           MGT 
_pdbx_nonpoly_scheme.pdb_strand_id    B 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      201 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       MGT 
_pdbx_nonpoly_scheme.auth_mon_id      MGT 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG MGT . . . D 4 179.975 141.722 167.391 1 88.13 ? PG MGT 201 B 1 
HETATM 2 O O1G MGT . . . D 4 179.911 140.387 166.663 1 82.81 ? O1G MGT 201 B 1 
HETATM 3 O O2G MGT . . . D 4 179.774 142.949 166.531 1 84.86 ? O2G MGT 201 B 1 
HETATM 4 O O3G MGT . . . D 4 181.159 141.845 168.317 1 91.41 ? O3G MGT 201 B 1 
HETATM 5 O O3B MGT . . . D 4 178.702 141.785 168.379 1 76.21 ? O3B MGT 201 B 1 
HETATM 6 P PB MGT . . . D 4 178.128 140.482 169.131 1 73.58 ? PB MGT 201 B 1 
HETATM 7 O O1B MGT . . . D 4 176.904 139.983 168.421 1 76.34 ? O1B MGT 201 B 1 
HETATM 8 O O2B MGT . . . D 4 179.241 139.472 169.305 1 71.96 ? O2B MGT 201 B 1 
HETATM 9 O O3A MGT . . . D 4 177.729 141.096 170.566 1 74.84 ? O3A MGT 201 B 1 
HETATM 10 P PA MGT . . . D 4 176.558 142.183 170.817 1 77.65 ? PA MGT 201 B 1 
HETATM 11 O O1A MGT . . . D 4 176.536 142.587 172.272 1 76.96 ? O1A MGT 201 B 1 
HETATM 12 O O2A MGT . . . D 4 176.657 143.29 169.794 1 78.72 ? O2A MGT 201 B 1 
HETATM 13 O O5' MGT . . . D 4 175.261 141.259 170.546 1 78.52 ? O5' MGT 201 B 1 
HETATM 14 C C5' MGT . . . D 4 174.048 141.341 171.303 1 75.8 ? C5' MGT 201 B 1 
HETATM 15 C C4' MGT . . . D 4 172.87 140.812 170.482 1 73.09 ? C4' MGT 201 B 1 
HETATM 16 O O4' MGT . . . D 4 172.774 141.517 169.236 1 72 ? O4' MGT 201 B 1 
HETATM 17 C C3' MGT . . . D 4 173.03 139.34 170.13 1 71.37 ? C3' MGT 201 B 1 
HETATM 18 O O3' MGT . . . D 4 171.765 138.661 170.13 1 66.6 ? O3' MGT 201 B 1 
HETATM 19 C C2' MGT . . . D 4 173.625 139.388 168.741 1 70.46 ? C2' MGT 201 B 1 
HETATM 20 O O2' MGT . . . D 4 173.429 138.165 168.034 1 69.35 ? O2' MGT 201 B 1 
HETATM 21 C C1' MGT . . . D 4 172.897 140.586 168.145 1 70.92 ? C1' MGT 201 B 1 
HETATM 22 N N9 MGT . . . D 4 173.578 141.134 166.935 1 69.32 ? N9 MGT 201 B 1 
HETATM 23 C C8 MGT . . . D 4 174.625 142.12 167.207 1 71.49 ? C8 MGT 201 B 1 
HETATM 24 N N7 MGT . . . D 4 174.995 142.373 165.82 1 71.09 ? N7 MGT 201 B 1 
HETATM 25 C CM7 MGT . . . D 4 176.083 143.37 165.658 1 71.69 ? CM7 MGT 201 B 1 
HETATM 26 C C5 MGT . . . D 4 174.308 141.687 164.92 1 68.85 ? C5 MGT 201 B 1 
HETATM 27 C C6 MGT . . . D 4 174.355 141.642 163.454 1 69.77 ? C6 MGT 201 B 1 
HETATM 28 O O6 MGT . . . D 4 175.159 142.341 162.811 1 69.45 ? O6 MGT 201 B 1 
HETATM 29 N N1 MGT . . . D 4 173.479 140.81 162.853 1 71.07 ? N1 MGT 201 B 1 
HETATM 30 C C2 MGT . . . D 4 172.595 140.042 163.549 1 68.88 ? C2 MGT 201 B 1 
HETATM 31 N N2 MGT . . . D 4 171.751 139.225 162.867 1 67.55 ? N2 MGT 201 B 1 
HETATM 32 N N3 MGT . . . D 4 172.516 140.05 164.914 1 68.47 ? N3 MGT 201 B 1 
HETATM 33 C C4 MGT . . . D 4 173.34 140.844 165.648 1 68.64 ? C4 MGT 201 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#