data_8PMY # _model_server_result.job_id hpUHFkRMgts4W1VvVO_9_g _model_server_result.datetime_utc '2024-10-25 20:24:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pmy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":702}' # _entry.id 8PMY # _exptl.entry_id 8PMY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PMY _cell.length_a 56.19 _cell.length_b 122.95 _cell.length_c 158.67 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PMY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 C SG CYS 165 L CYS 23 1_555 C SG CYS 230 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc1 A OE1 GLU 16 A GLU 16 1_555 D ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc2 B NE2 HIS 128 B HIS 577 1_555 E ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8PMY _atom_sites.fract_transf_matrix[1][1] 0.017797 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008133 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN A 1 301 1 ZN ZN . E 3 ZN B 1 701 2 ZN ZN . F 3 ZN B 1 702 3 ZN ZN . G 4 HOH A 1 401 78 HOH HOH . G 4 HOH A 2 402 88 HOH HOH . G 4 HOH A 3 403 19 HOH HOH . G 4 HOH A 4 404 7 HOH HOH . G 4 HOH A 5 405 42 HOH HOH . G 4 HOH A 6 406 27 HOH HOH . G 4 HOH A 7 407 91 HOH HOH . G 4 HOH A 8 408 2 HOH HOH . G 4 HOH A 9 409 82 HOH HOH . G 4 HOH A 10 410 30 HOH HOH . G 4 HOH A 11 411 10 HOH HOH . G 4 HOH A 12 412 60 HOH HOH . G 4 HOH A 13 413 53 HOH HOH . G 4 HOH A 14 414 77 HOH HOH . G 4 HOH A 15 415 45 HOH HOH . G 4 HOH A 16 416 100 HOH HOH . G 4 HOH A 17 417 104 HOH HOH . G 4 HOH A 18 418 21 HOH HOH . G 4 HOH A 19 419 18 HOH HOH . G 4 HOH A 20 420 103 HOH HOH . G 4 HOH A 21 421 35 HOH HOH . G 4 HOH A 22 422 63 HOH HOH . G 4 HOH A 23 423 99 HOH HOH . G 4 HOH A 24 424 58 HOH HOH . G 4 HOH A 25 425 96 HOH HOH . G 4 HOH A 26 426 33 HOH HOH . G 4 HOH A 27 427 101 HOH HOH . G 4 HOH A 28 428 69 HOH HOH . G 4 HOH A 29 429 49 HOH HOH . G 4 HOH A 30 430 89 HOH HOH . G 4 HOH A 31 431 24 HOH HOH . G 4 HOH A 32 432 12 HOH HOH . G 4 HOH A 33 433 54 HOH HOH . G 4 HOH A 34 434 79 HOH HOH . G 4 HOH A 35 435 28 HOH HOH . G 4 HOH A 36 436 106 HOH HOH . G 4 HOH A 37 437 38 HOH HOH . G 4 HOH A 38 438 86 HOH HOH . G 4 HOH A 39 439 50 HOH HOH . G 4 HOH A 40 440 94 HOH HOH . H 4 HOH B 1 801 87 HOH HOH . H 4 HOH B 2 802 46 HOH HOH . H 4 HOH B 3 803 14 HOH HOH . H 4 HOH B 4 804 83 HOH HOH . H 4 HOH B 5 805 39 HOH HOH . H 4 HOH B 6 806 9 HOH HOH . H 4 HOH B 7 807 22 HOH HOH . H 4 HOH B 8 808 43 HOH HOH . H 4 HOH B 9 809 84 HOH HOH . H 4 HOH B 10 810 1 HOH HOH . H 4 HOH B 11 811 105 HOH HOH . H 4 HOH B 12 812 93 HOH HOH . H 4 HOH B 13 813 29 HOH HOH . H 4 HOH B 14 814 26 HOH HOH . H 4 HOH B 15 815 72 HOH HOH . H 4 HOH B 16 816 73 HOH HOH . H 4 HOH B 17 817 15 HOH HOH . H 4 HOH B 18 818 11 HOH HOH . H 4 HOH B 19 819 55 HOH HOH . H 4 HOH B 20 820 74 HOH HOH . H 4 HOH B 21 821 25 HOH HOH . H 4 HOH B 22 822 16 HOH HOH . H 4 HOH B 23 823 76 HOH HOH . H 4 HOH B 24 824 23 HOH HOH . H 4 HOH B 25 825 56 HOH HOH . H 4 HOH B 26 826 5 HOH HOH . H 4 HOH B 27 827 92 HOH HOH . H 4 HOH B 28 828 75 HOH HOH . H 4 HOH B 29 829 71 HOH HOH . H 4 HOH B 30 830 48 HOH HOH . H 4 HOH B 31 831 80 HOH HOH . H 4 HOH B 32 832 68 HOH HOH . H 4 HOH B 33 833 62 HOH HOH . H 4 HOH B 34 834 59 HOH HOH . H 4 HOH B 35 835 31 HOH HOH . H 4 HOH B 36 836 65 HOH HOH . H 4 HOH B 37 837 13 HOH HOH . H 4 HOH B 38 838 102 HOH HOH . H 4 HOH B 39 839 8 HOH HOH . H 4 HOH B 40 840 107 HOH HOH . H 4 HOH B 41 841 41 HOH HOH . H 4 HOH B 42 842 52 HOH HOH . H 4 HOH B 43 843 70 HOH HOH . H 4 HOH B 44 844 6 HOH HOH . I 4 HOH L 1 201 44 HOH HOH . I 4 HOH L 2 202 40 HOH HOH . I 4 HOH L 3 203 47 HOH HOH . I 4 HOH L 4 204 37 HOH HOH . I 4 HOH L 5 205 34 HOH HOH . I 4 HOH L 6 206 61 HOH HOH . I 4 HOH L 7 207 97 HOH HOH . I 4 HOH L 8 208 3 HOH HOH . I 4 HOH L 9 209 20 HOH HOH . I 4 HOH L 10 210 4 HOH HOH . I 4 HOH L 11 211 95 HOH HOH . I 4 HOH L 12 212 67 HOH HOH . I 4 HOH L 13 213 64 HOH HOH . I 4 HOH L 14 214 51 HOH HOH . I 4 HOH L 15 215 32 HOH HOH . I 4 HOH L 16 216 90 HOH HOH . I 4 HOH L 17 217 98 HOH HOH . I 4 HOH L 18 218 66 HOH HOH . I 4 HOH L 19 219 36 HOH HOH . I 4 HOH L 20 220 17 HOH HOH . I 4 HOH L 21 221 85 HOH HOH . I 4 HOH L 22 222 57 HOH HOH . I 4 HOH L 23 223 81 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -14.804 _atom_site.Cartn_y -52.288 _atom_site.Cartn_z 7.955 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 108.41 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 702 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #