data_8PN1 # _model_server_result.job_id X8TJ9BCVpl7Cv3CUrzXCPA _model_server_result.datetime_utc '2024-11-14 04:01:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pn1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1001}' # _entry.id 8PN1 # _exptl.entry_id 8PN1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PN1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PN1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 96 A ILE 121 1_555 H MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc2 A OD1 ASP 141 A ASP 166 1_555 H MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc3 G O1G ATP . A ATP 1001 1_555 H MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc4 G O2B ATP . A ATP 1001 1_555 H MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc5 G O2A ATP . A ATP 1001 1_555 H MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc6 B O ILE 96 B ILE 121 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc7 B OD1 ASP 141 B ASP 166 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc8 I O1G ATP . B ATP 1001 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc9 I O2B ATP . B ATP 1001 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc10 I O2A ATP . B ATP 1001 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc11 C O ILE 96 C ILE 121 1_555 L MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc12 C OD1 ASP 141 C ASP 166 1_555 L MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc13 K O1G ATP . C ATP 1001 1_555 L MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc14 K O2B ATP . C ATP 1001 1_555 L MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc15 K O2A ATP . C ATP 1001 1_555 L MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc16 D O ILE 96 D ILE 121 1_555 N MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc17 D OD1 ASP 141 D ASP 166 1_555 N MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc18 M O1G ATP . D ATP 1001 1_555 N MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc19 M O2B ATP . D ATP 1001 1_555 N MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc20 M O2A ATP . D ATP 1001 1_555 N MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc21 E O ILE 96 E ILE 121 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc22 E OD1 ASP 141 E ASP 166 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc23 O O1G ATP . E ATP 1001 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc24 O O2B ATP . E ATP 1001 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc25 O O2A ATP . E ATP 1001 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc26 F O ILE 96 F ILE 121 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc27 F OD1 ASP 141 F ASP 166 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc28 Q O1G ATP . F ATP 1001 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc29 Q O2B ATP . F ATP 1001 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc30 Q O2A ATP . F ATP 1001 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8PN1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ATP A 1 1001 1001 ATP ATP . H 3 MG A 1 1002 1002 MG MG . I 2 ATP B 1 1001 1001 ATP ATP . J 3 MG B 1 1002 1002 MG MG . K 2 ATP C 1 1001 1001 ATP ATP . L 3 MG C 1 1002 1002 MG MG . M 2 ATP D 1 1001 1001 ATP ATP . N 3 MG D 1 1002 1002 MG MG . O 2 ATP E 1 1001 1001 ATP ATP . P 3 MG E 1 1002 1002 MG MG . Q 2 ATP F 1 1001 1001 ATP ATP . R 3 MG F 1 1002 1002 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . K 2 125.2 139.188 78.463 1 78.15 ? PG ATP 1001 C 1 HETATM 2 O O1G ATP . . . K 2 126.098 138.086 78.908 1 73.88 ? O1G ATP 1001 C 1 HETATM 3 O O2G ATP . . . K 2 124.006 139.413 79.387 1 73.13 ? O2G ATP 1001 C 1 HETATM 4 O O3G ATP . . . K 2 124.7 139.033 77.028 1 69.8 ? O3G ATP 1001 C 1 HETATM 5 P PB ATP . . . K 2 127.369 141.182 78.913 1 75.1 ? PB ATP 1001 C 1 HETATM 6 O O1B ATP . . . K 2 127.862 142.189 77.957 1 72.44 ? O1B ATP 1001 C 1 HETATM 7 O O2B ATP . . . K 2 128.304 140.006 79.177 1 71.68 ? O2B ATP 1001 C 1 HETATM 8 O O3B ATP . . . K 2 125.976 140.578 78.468 1 66.03 ? O3B ATP 1001 C 1 HETATM 9 P PA ATP . . . K 2 127.177 141.416 81.849 1 72.91 ? PA ATP 1001 C 1 HETATM 10 O O1A ATP . . . K 2 128.239 142.204 82.505 1 68.54 ? O1A ATP 1001 C 1 HETATM 11 O O2A ATP . . . K 2 127.378 139.904 81.887 1 68.96 ? O2A ATP 1001 C 1 HETATM 12 O O3A ATP . . . K 2 127.007 141.817 80.326 1 67.97 ? O3A ATP 1001 C 1 HETATM 13 O O5' ATP . . . K 2 125.759 141.743 82.458 1 72.49 ? O5' ATP 1001 C 1 HETATM 14 C C5' ATP . . . K 2 125.605 142.693 83.532 1 71.2 ? C5' ATP 1001 C 1 HETATM 15 C C4' ATP . . . K 2 124.146 142.75 83.908 1 71.66 ? C4' ATP 1001 C 1 HETATM 16 O O4' ATP . . . K 2 123.984 142.374 85.295 1 68.44 ? O4' ATP 1001 C 1 HETATM 17 C C3' ATP . . . K 2 123.483 144.118 83.75 1 69.03 ? C3' ATP 1001 C 1 HETATM 18 O O3' ATP . . . K 2 122.164 143.987 83.234 1 76.49 ? O3' ATP 1001 C 1 HETATM 19 C C2' ATP . . . K 2 123.47 144.659 85.18 1 66.22 ? C2' ATP 1001 C 1 HETATM 20 O O2' ATP . . . K 2 122.383 145.552 85.389 1 71.51 ? O2' ATP 1001 C 1 HETATM 21 C C1' ATP . . . K 2 123.261 143.376 85.979 1 63.77 ? C1' ATP 1001 C 1 HETATM 22 N N9 ATP . . . K 2 123.747 143.445 87.351 1 62.39 ? N9 ATP 1001 C 1 HETATM 23 C C8 ATP . . . K 2 124.748 144.247 87.833 1 65.53 ? C8 ATP 1001 C 1 HETATM 24 N N7 ATP . . . K 2 124.973 144.109 89.117 1 64.54 ? N7 ATP 1001 C 1 HETATM 25 C C5 ATP . . . K 2 124.053 143.149 89.509 1 62.87 ? C5 ATP 1001 C 1 HETATM 26 C C6 ATP . . . K 2 123.774 142.554 90.754 1 63.09 ? C6 ATP 1001 C 1 HETATM 27 N N6 ATP . . . K 2 124.423 142.851 91.883 1 65.2 ? N6 ATP 1001 C 1 HETATM 28 N N1 ATP . . . K 2 122.791 141.629 90.801 1 61.62 ? N1 ATP 1001 C 1 HETATM 29 C C2 ATP . . . K 2 122.137 141.328 89.677 1 60.69 ? C2 ATP 1001 C 1 HETATM 30 N N3 ATP . . . K 2 122.312 141.822 88.45 1 61.12 ? N3 ATP 1001 C 1 HETATM 31 C C4 ATP . . . K 2 123.29 142.733 88.431 1 63.62 ? C4 ATP 1001 C 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #