data_8PN2 # _model_server_result.job_id lvX9qY_JlHhIvjsT9m1boQ _model_server_result.datetime_utc '2025-03-01 03:16:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pn2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1001}' # _entry.id 8PN2 # _exptl.entry_id 8PN2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PN2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PN2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 123 A ILE 121 1_555 H MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc2 A OD1 ASP 168 A ASP 166 1_555 H MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc3 G O2G ATP . A ATP 1001 1_555 H MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc4 G O2B ATP . A ATP 1001 1_555 H MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc5 G O2A ATP . A ATP 1001 1_555 H MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc6 B O ILE 123 B ILE 121 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc7 B OD1 ASP 168 B ASP 166 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc8 I O2G ATP . B ATP 1001 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc9 I O2B ATP . B ATP 1001 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc10 I O2A ATP . B ATP 1001 1_555 J MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc11 C O ILE 123 C ILE 121 1_555 L MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc12 C OD1 ASP 168 C ASP 166 1_555 L MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc13 K O2G ATP . C ATP 1001 1_555 L MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc14 K O2B ATP . C ATP 1001 1_555 L MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc15 K O2A ATP . C ATP 1001 1_555 L MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc16 D O ILE 123 D ILE 121 1_555 N MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc17 D OD1 ASP 168 D ASP 166 1_555 N MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc18 M O2G ATP . D ATP 1001 1_555 N MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc19 M O2B ATP . D ATP 1001 1_555 N MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc20 M O2A ATP . D ATP 1001 1_555 N MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc21 E O ILE 123 E ILE 121 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc22 E OD1 ASP 168 E ASP 166 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc23 O O2G ATP . E ATP 1001 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc24 O O2B ATP . E ATP 1001 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc25 O O2A ATP . E ATP 1001 1_555 P MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc26 F O ILE 123 F ILE 121 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc27 F OD1 ASP 168 F ASP 166 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc28 Q O2G ATP . F ATP 1001 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc29 Q O2B ATP . F ATP 1001 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc30 Q O2A ATP . F ATP 1001 1_555 R MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8PN2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ATP A 1 1001 1001 ATP ATP . H 3 MG A 1 1002 1002 MG MG . I 2 ATP B 1 1001 1001 ATP ATP . J 3 MG B 1 1002 1002 MG MG . K 2 ATP C 1 1001 1001 ATP ATP . L 3 MG C 1 1002 1002 MG MG . M 2 ATP D 1 1001 1001 ATP ATP . N 3 MG D 1 1002 1002 MG MG . O 2 ATP E 1 1001 1001 ATP ATP . P 3 MG E 1 1002 1002 MG MG . Q 2 ATP F 1 1001 1001 ATP ATP . R 3 MG F 1 1002 1002 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . I 2 183.423 142.641 127.899 1 39.72 ? PG ATP 1001 B 1 HETATM 2 O O1G ATP . . . I 2 183.794 143.282 129.192 1 35.25 ? O1G ATP 1001 B 1 HETATM 3 O O2G ATP . . . I 2 182.097 141.885 127.95 1 33.96 ? O2G ATP 1001 B 1 HETATM 4 O O3G ATP . . . I 2 183.398 143.61 126.715 1 48.43 ? O3G ATP 1001 B 1 HETATM 5 P PB ATP . . . I 2 185.083 140.153 128.017 1 32.87 ? PB ATP 1001 B 1 HETATM 6 O O1B ATP . . . I 2 186.244 139.7 127.228 1 34.08 ? O1B ATP 1001 B 1 HETATM 7 O O2B ATP . . . I 2 183.914 139.173 128.093 1 35.24 ? O2B ATP 1001 B 1 HETATM 8 O O3B ATP . . . I 2 184.502 141.536 127.491 1 32.64 ? O3B ATP 1001 B 1 HETATM 9 P PA ATP . . . I 2 185.12 140.017 130.967 1 21.9 ? PA ATP 1001 B 1 HETATM 10 O O1A ATP . . . I 2 185.827 138.766 131.303 1 28.43 ? O1A ATP 1001 B 1 HETATM 11 O O2A ATP . . . I 2 183.598 139.946 131.042 1 28.21 ? O2A ATP 1001 B 1 HETATM 12 O O3A ATP . . . I 2 185.488 140.522 129.511 1 29.28 ? O3A ATP 1001 B 1 HETATM 13 O O5' ATP . . . I 2 185.593 141.21 131.886 1 24.72 ? O5' ATP 1001 B 1 HETATM 14 C C5' ATP . . . I 2 186.865 141.174 132.564 1 28.38 ? C5' ATP 1001 B 1 HETATM 15 C C4' ATP . . . I 2 187.095 142.518 133.207 1 26.87 ? C4' ATP 1001 B 1 HETATM 16 O O4' ATP . . . I 2 186.353 142.6 134.44 1 30.99 ? O4' ATP 1001 B 1 HETATM 17 C C3' ATP . . . I 2 188.531 142.81 133.617 1 30.89 ? C3' ATP 1001 B 1 HETATM 18 O O3' ATP . . . I 2 189.293 143.282 132.512 1 34.1 ? O3' ATP 1001 B 1 HETATM 19 C C2' ATP . . . I 2 188.344 143.893 134.682 1 30.31 ? C2' ATP 1001 B 1 HETATM 20 O O2' ATP . . . I 2 188.248 145.188 134.102 1 29.46 ? O2' ATP 1001 B 1 HETATM 21 C C1' ATP . . . I 2 187.008 143.495 135.326 1 28.65 ? C1' ATP 1001 B 1 HETATM 22 N N9 ATP . . . I 2 187.142 142.849 136.627 1 27.33 ? N9 ATP 1001 B 1 HETATM 23 C C8 ATP . . . I 2 187.899 141.747 136.93 1 26.86 ? C8 ATP 1001 B 1 HETATM 24 N N7 ATP . . . I 2 187.838 141.385 138.188 1 26.36 ? N7 ATP 1001 B 1 HETATM 25 C C5 ATP . . . I 2 186.982 142.315 138.755 1 23.52 ? C5 ATP 1001 B 1 HETATM 26 C C6 ATP . . . I 2 186.501 142.488 140.068 1 29.12 ? C6 ATP 1001 B 1 HETATM 27 N N6 ATP . . . I 2 186.829 141.693 141.091 1 34.66 ? N6 ATP 1001 B 1 HETATM 28 N N1 ATP . . . I 2 185.658 143.519 140.298 1 27.5 ? N1 ATP 1001 B 1 HETATM 29 C C2 ATP . . . I 2 185.326 144.317 139.28 1 24.07 ? C2 ATP 1001 B 1 HETATM 30 N N3 ATP . . . I 2 185.715 144.252 138.005 1 24.03 ? N3 ATP 1001 B 1 HETATM 31 C C4 ATP . . . I 2 186.545 143.224 137.805 1 24.62 ? C4 ATP 1001 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #