data_8PND
#
_model_server_result.job_id            XSgxAU8wuX5f_Wbe5n3T6Q 
_model_server_result.datetime_utc      '2024-11-29 19:24:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pnd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":402}' 
#
_entry.id    8PND 
#
_exptl.entry_id    8PND 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PND 
_cell.length_a            53.6 
_cell.length_b            81.136 
_cell.length_c            192.347 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PND 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab (z,x,y)' 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 H N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     8PND 
_atom_sites.fract_transf_matrix[1][1]    0.018657 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012325 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005199 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZWW A 1 401 401 ZWW PB5 . 
D 3 GOL A 1 402 402 GOL GOL . 
E 3 GOL A 1 403 403 GOL GOL . 
F 3 GOL A 1 404 404 GOL GOL . 
G 2 ZWW B 1 401 401 ZWW PB5 . 
H 3 GOL B 1 402 402 GOL GOL . 
I 4 EDO B 1 403 403 EDO EDO . 
J 4 EDO B 1 404 404 EDO EDO . 
K 5 HOH A 1 501 270 HOH HOH . 
K 5 HOH A 2 502 290 HOH HOH . 
K 5 HOH A 3 503 284 HOH HOH . 
K 5 HOH A 4 504 92 HOH HOH . 
K 5 HOH A 5 505 283 HOH HOH . 
K 5 HOH A 6 506 123 HOH HOH . 
K 5 HOH A 7 507 286 HOH HOH . 
K 5 HOH A 8 508 12 HOH HOH . 
K 5 HOH A 9 509 80 HOH HOH . 
K 5 HOH A 10 510 174 HOH HOH . 
K 5 HOH A 11 511 58 HOH HOH . 
K 5 HOH A 12 512 79 HOH HOH . 
K 5 HOH A 13 513 314 HOH HOH . 
K 5 HOH A 14 514 149 HOH HOH . 
K 5 HOH A 15 515 99 HOH HOH . 
K 5 HOH A 16 516 15 HOH HOH . 
K 5 HOH A 17 517 25 HOH HOH . 
K 5 HOH A 18 518 268 HOH HOH . 
K 5 HOH A 19 519 9 HOH HOH . 
K 5 HOH A 20 520 206 HOH HOH . 
K 5 HOH A 21 521 108 HOH HOH . 
K 5 HOH A 22 522 287 HOH HOH . 
K 5 HOH A 23 523 1 HOH HOH . 
K 5 HOH A 24 524 180 HOH HOH . 
K 5 HOH A 25 525 105 HOH HOH . 
K 5 HOH A 26 526 194 HOH HOH . 
K 5 HOH A 27 527 232 HOH HOH . 
K 5 HOH A 28 528 210 HOH HOH . 
K 5 HOH A 29 529 11 HOH HOH . 
K 5 HOH A 30 530 26 HOH HOH . 
K 5 HOH A 31 531 46 HOH HOH . 
K 5 HOH A 32 532 18 HOH HOH . 
K 5 HOH A 33 533 303 HOH HOH . 
K 5 HOH A 34 534 45 HOH HOH . 
K 5 HOH A 35 535 84 HOH HOH . 
K 5 HOH A 36 536 130 HOH HOH . 
K 5 HOH A 37 537 24 HOH HOH . 
K 5 HOH A 38 538 60 HOH HOH . 
K 5 HOH A 39 539 70 HOH HOH . 
K 5 HOH A 40 540 81 HOH HOH . 
K 5 HOH A 41 541 165 HOH HOH . 
K 5 HOH A 42 542 179 HOH HOH . 
K 5 HOH A 43 543 199 HOH HOH . 
K 5 HOH A 44 544 222 HOH HOH . 
K 5 HOH A 45 545 5 HOH HOH . 
K 5 HOH A 46 546 20 HOH HOH . 
K 5 HOH A 47 547 13 HOH HOH . 
K 5 HOH A 48 548 167 HOH HOH . 
K 5 HOH A 49 549 260 HOH HOH . 
K 5 HOH A 50 550 53 HOH HOH . 
K 5 HOH A 51 551 66 HOH HOH . 
K 5 HOH A 52 552 97 HOH HOH . 
K 5 HOH A 53 553 8 HOH HOH . 
K 5 HOH A 54 554 30 HOH HOH . 
K 5 HOH A 55 555 68 HOH HOH . 
K 5 HOH A 56 556 153 HOH HOH . 
K 5 HOH A 57 557 89 HOH HOH . 
K 5 HOH A 58 558 293 HOH HOH . 
K 5 HOH A 59 559 85 HOH HOH . 
K 5 HOH A 60 560 16 HOH HOH . 
K 5 HOH A 61 561 36 HOH HOH . 
K 5 HOH A 62 562 43 HOH HOH . 
K 5 HOH A 63 563 272 HOH HOH . 
K 5 HOH A 64 564 3 HOH HOH . 
K 5 HOH A 65 565 47 HOH HOH . 
K 5 HOH A 66 566 49 HOH HOH . 
K 5 HOH A 67 567 33 HOH HOH . 
K 5 HOH A 68 568 7 HOH HOH . 
K 5 HOH A 69 569 40 HOH HOH . 
K 5 HOH A 70 570 51 HOH HOH . 
K 5 HOH A 71 571 73 HOH HOH . 
K 5 HOH A 72 572 299 HOH HOH . 
K 5 HOH A 73 573 114 HOH HOH . 
K 5 HOH A 74 574 267 HOH HOH . 
K 5 HOH A 75 575 54 HOH HOH . 
K 5 HOH A 76 576 38 HOH HOH . 
K 5 HOH A 77 577 29 HOH HOH . 
K 5 HOH A 78 578 146 HOH HOH . 
K 5 HOH A 79 579 63 HOH HOH . 
K 5 HOH A 80 580 39 HOH HOH . 
K 5 HOH A 81 581 134 HOH HOH . 
K 5 HOH A 82 582 112 HOH HOH . 
K 5 HOH A 83 583 94 HOH HOH . 
K 5 HOH A 84 584 37 HOH HOH . 
K 5 HOH A 85 585 107 HOH HOH . 
K 5 HOH A 86 586 2 HOH HOH . 
K 5 HOH A 87 587 77 HOH HOH . 
K 5 HOH A 88 588 14 HOH HOH . 
K 5 HOH A 89 589 48 HOH HOH . 
K 5 HOH A 90 590 42 HOH HOH . 
K 5 HOH A 91 591 302 HOH HOH . 
K 5 HOH A 92 592 269 HOH HOH . 
K 5 HOH A 93 593 93 HOH HOH . 
K 5 HOH A 94 594 28 HOH HOH . 
K 5 HOH A 95 595 67 HOH HOH . 
K 5 HOH A 96 596 17 HOH HOH . 
K 5 HOH A 97 597 4 HOH HOH . 
K 5 HOH A 98 598 113 HOH HOH . 
K 5 HOH A 99 599 189 HOH HOH . 
K 5 HOH A 100 600 289 HOH HOH . 
K 5 HOH A 101 601 34 HOH HOH . 
K 5 HOH A 102 602 132 HOH HOH . 
K 5 HOH A 103 603 82 HOH HOH . 
K 5 HOH A 104 604 172 HOH HOH . 
K 5 HOH A 105 605 61 HOH HOH . 
K 5 HOH A 106 606 91 HOH HOH . 
K 5 HOH A 107 607 278 HOH HOH . 
K 5 HOH A 108 608 164 HOH HOH . 
K 5 HOH A 109 609 116 HOH HOH . 
K 5 HOH A 110 610 183 HOH HOH . 
K 5 HOH A 111 611 10 HOH HOH . 
K 5 HOH A 112 612 59 HOH HOH . 
K 5 HOH A 113 613 168 HOH HOH . 
K 5 HOH A 114 614 207 HOH HOH . 
K 5 HOH A 115 615 75 HOH HOH . 
K 5 HOH A 116 616 86 HOH HOH . 
K 5 HOH A 117 617 35 HOH HOH . 
K 5 HOH A 118 618 186 HOH HOH . 
K 5 HOH A 119 619 295 HOH HOH . 
K 5 HOH A 120 620 221 HOH HOH . 
K 5 HOH A 121 621 281 HOH HOH . 
K 5 HOH A 122 622 169 HOH HOH . 
K 5 HOH A 123 623 230 HOH HOH . 
K 5 HOH A 124 624 52 HOH HOH . 
K 5 HOH A 125 625 87 HOH HOH . 
K 5 HOH A 126 626 291 HOH HOH . 
K 5 HOH A 127 627 131 HOH HOH . 
K 5 HOH A 128 628 141 HOH HOH . 
K 5 HOH A 129 629 65 HOH HOH . 
K 5 HOH A 130 630 101 HOH HOH . 
K 5 HOH A 131 631 22 HOH HOH . 
K 5 HOH A 132 632 294 HOH HOH . 
K 5 HOH A 133 633 98 HOH HOH . 
K 5 HOH A 134 634 185 HOH HOH . 
K 5 HOH A 135 635 62 HOH HOH . 
K 5 HOH A 136 636 195 HOH HOH . 
K 5 HOH A 137 637 266 HOH HOH . 
K 5 HOH A 138 638 95 HOH HOH . 
K 5 HOH A 139 639 106 HOH HOH . 
K 5 HOH A 140 640 229 HOH HOH . 
K 5 HOH A 141 641 257 HOH HOH . 
K 5 HOH A 142 642 72 HOH HOH . 
K 5 HOH A 143 643 175 HOH HOH . 
K 5 HOH A 144 644 173 HOH HOH . 
K 5 HOH A 145 645 55 HOH HOH . 
K 5 HOH A 146 646 234 HOH HOH . 
K 5 HOH A 147 647 263 HOH HOH . 
K 5 HOH A 148 648 78 HOH HOH . 
K 5 HOH A 149 649 264 HOH HOH . 
K 5 HOH A 150 650 150 HOH HOH . 
K 5 HOH A 151 651 223 HOH HOH . 
K 5 HOH A 152 652 125 HOH HOH . 
K 5 HOH A 153 653 220 HOH HOH . 
K 5 HOH A 154 654 139 HOH HOH . 
K 5 HOH A 155 655 225 HOH HOH . 
K 5 HOH A 156 656 215 HOH HOH . 
K 5 HOH A 157 657 273 HOH HOH . 
K 5 HOH A 158 658 228 HOH HOH . 
K 5 HOH A 159 659 280 HOH HOH . 
K 5 HOH A 160 660 277 HOH HOH . 
K 5 HOH A 161 661 255 HOH HOH . 
K 5 HOH A 162 662 233 HOH HOH . 
K 5 HOH A 163 663 254 HOH HOH . 
K 5 HOH A 164 664 138 HOH HOH . 
K 5 HOH A 165 665 184 HOH HOH . 
K 5 HOH A 166 666 160 HOH HOH . 
K 5 HOH A 167 667 276 HOH HOH . 
K 5 HOH A 168 668 304 HOH HOH . 
K 5 HOH A 169 669 196 HOH HOH . 
K 5 HOH A 170 670 170 HOH HOH . 
K 5 HOH A 171 671 19 HOH HOH . 
K 5 HOH A 172 672 282 HOH HOH . 
K 5 HOH A 173 673 211 HOH HOH . 
K 5 HOH A 174 674 96 HOH HOH . 
K 5 HOH A 175 675 216 HOH HOH . 
K 5 HOH A 176 676 262 HOH HOH . 
K 5 HOH A 177 677 235 HOH HOH . 
K 5 HOH A 178 678 104 HOH HOH . 
K 5 HOH A 179 679 137 HOH HOH . 
K 5 HOH A 180 680 300 HOH HOH . 
K 5 HOH A 181 681 259 HOH HOH . 
K 5 HOH A 182 682 301 HOH HOH . 
K 5 HOH A 183 683 162 HOH HOH . 
K 5 HOH A 184 684 102 HOH HOH . 
K 5 HOH A 185 685 156 HOH HOH . 
K 5 HOH A 186 686 258 HOH HOH . 
K 5 HOH A 187 687 227 HOH HOH . 
K 5 HOH A 188 688 218 HOH HOH . 
K 5 HOH A 189 689 88 HOH HOH . 
K 5 HOH A 190 690 161 HOH HOH . 
K 5 HOH A 191 691 50 HOH HOH . 
K 5 HOH A 192 692 200 HOH HOH . 
K 5 HOH A 193 693 213 HOH HOH . 
K 5 HOH A 194 694 154 HOH HOH . 
K 5 HOH A 195 695 224 HOH HOH . 
K 5 HOH A 196 696 118 HOH HOH . 
K 5 HOH A 197 697 129 HOH HOH . 
K 5 HOH A 198 698 191 HOH HOH . 
K 5 HOH A 199 699 148 HOH HOH . 
K 5 HOH A 200 700 76 HOH HOH . 
K 5 HOH A 201 701 297 HOH HOH . 
K 5 HOH A 202 702 64 HOH HOH . 
K 5 HOH A 203 703 127 HOH HOH . 
K 5 HOH A 204 704 219 HOH HOH . 
K 5 HOH A 205 705 271 HOH HOH . 
K 5 HOH A 206 706 152 HOH HOH . 
K 5 HOH A 207 707 109 HOH HOH . 
K 5 HOH A 208 708 298 HOH HOH . 
K 5 HOH A 209 709 279 HOH HOH . 
K 5 HOH A 210 710 117 HOH HOH . 
L 5 HOH B 1 501 307 HOH HOH . 
L 5 HOH B 2 502 237 HOH HOH . 
L 5 HOH B 3 503 74 HOH HOH . 
L 5 HOH B 4 504 205 HOH HOH . 
L 5 HOH B 5 505 310 HOH HOH . 
L 5 HOH B 6 506 121 HOH HOH . 
L 5 HOH B 7 507 243 HOH HOH . 
L 5 HOH B 8 508 208 HOH HOH . 
L 5 HOH B 9 509 100 HOH HOH . 
L 5 HOH B 10 510 110 HOH HOH . 
L 5 HOH B 11 511 147 HOH HOH . 
L 5 HOH B 12 512 32 HOH HOH . 
L 5 HOH B 13 513 31 HOH HOH . 
L 5 HOH B 14 514 103 HOH HOH . 
L 5 HOH B 15 515 288 HOH HOH . 
L 5 HOH B 16 516 23 HOH HOH . 
L 5 HOH B 17 517 41 HOH HOH . 
L 5 HOH B 18 518 182 HOH HOH . 
L 5 HOH B 19 519 144 HOH HOH . 
L 5 HOH B 20 520 71 HOH HOH . 
L 5 HOH B 21 521 313 HOH HOH . 
L 5 HOH B 22 522 214 HOH HOH . 
L 5 HOH B 23 523 242 HOH HOH . 
L 5 HOH B 24 524 124 HOH HOH . 
L 5 HOH B 25 525 308 HOH HOH . 
L 5 HOH B 26 526 158 HOH HOH . 
L 5 HOH B 27 527 239 HOH HOH . 
L 5 HOH B 28 528 135 HOH HOH . 
L 5 HOH B 29 529 69 HOH HOH . 
L 5 HOH B 30 530 90 HOH HOH . 
L 5 HOH B 31 531 56 HOH HOH . 
L 5 HOH B 32 532 57 HOH HOH . 
L 5 HOH B 33 533 111 HOH HOH . 
L 5 HOH B 34 534 309 HOH HOH . 
L 5 HOH B 35 535 128 HOH HOH . 
L 5 HOH B 36 536 188 HOH HOH . 
L 5 HOH B 37 537 241 HOH HOH . 
L 5 HOH B 38 538 249 HOH HOH . 
L 5 HOH B 39 539 126 HOH HOH . 
L 5 HOH B 40 540 306 HOH HOH . 
L 5 HOH B 41 541 311 HOH HOH . 
L 5 HOH B 42 542 193 HOH HOH . 
L 5 HOH B 43 543 248 HOH HOH . 
L 5 HOH B 44 544 312 HOH HOH . 
L 5 HOH B 45 545 240 HOH HOH . 
L 5 HOH B 46 546 296 HOH HOH . 
L 5 HOH B 47 547 305 HOH HOH . 
L 5 HOH B 48 548 236 HOH HOH . 
L 5 HOH B 49 549 166 HOH HOH . 
L 5 HOH B 50 550 142 HOH HOH . 
L 5 HOH B 51 551 143 HOH HOH . 
L 5 HOH B 52 552 247 HOH HOH . 
L 5 HOH B 53 553 265 HOH HOH . 
L 5 HOH B 54 554 250 HOH HOH . 
L 5 HOH B 55 555 120 HOH HOH . 
L 5 HOH B 56 556 181 HOH HOH . 
L 5 HOH B 57 557 253 HOH HOH . 
L 5 HOH B 58 558 145 HOH HOH . 
L 5 HOH B 59 559 285 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 3 28.246 4.867 204.267 1 93.84 ? C1 GOL 402 B 1 
HETATM 2 O O1 GOL . . . H 3 29.582 4.512 204.495 1 90.14 ? O1 GOL 402 B 1 
HETATM 3 C C2 GOL . . . H 3 27.963 4.688 202.741 1 88.24 ? C2 GOL 402 B 1 
HETATM 4 O O2 GOL . . . H 3 27.61 3.387 202.421 1 94.81 ? O2 GOL 402 B 1 
HETATM 5 C C3 GOL . . . H 3 26.831 5.685 202.418 1 81.61 ? C3 GOL 402 B 1 
HETATM 6 O O3 GOL . . . H 3 27.302 6.942 202.798 1 86.14 ? O3 GOL 402 B 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           368 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#