data_8PNE
#
_model_server_result.job_id            '_T8fosB5LjM9-FtUxs0XZA' 
_model_server_result.datetime_utc      '2024-11-14 19:04:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pne 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":306}' 
#
_entry.id    8PNE 
#
_exptl.entry_id    8PNE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PNE 
_cell.length_a            67.216 
_cell.length_b            79.567 
_cell.length_c            148.188 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PNE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 6 A ASP 6 1_555 F MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
metalc ? metalc2 A O GLY 8 A GLY 8 1_555 F MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc3 A OD1 ASP 25 A ASP 25 1_555 G CA CA . A CA 306 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc4 A OD2 ASP 25 A ASP 25 1_555 G CA CA . A CA 306 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc5 A O THR 115 A THR 115 1_555 G CA CA . A CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc6 A OE1 GLU 120 A GLU 120 1_555 G CA CA . A CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc7 A OE2 GLU 120 A GLU 120 1_555 G CA CA . A CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc8 A OD1 ASP 166 A ASP 166 1_555 F MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc9 F MG MG . A MG 305 1_555 L O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc10 F MG MG . A MG 305 1_555 L O HOH . A HOH 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc11 F MG MG . A MG 305 1_555 L O HOH . A HOH 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc12 G CA CA . A CA 306 1_555 L O HOH . A HOH 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc13 G CA CA . A CA 306 1_555 L O HOH . A HOH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc14 G CA CA . A CA 306 1_555 L O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8PNE 
_atom_sites.fract_transf_matrix[1][1]    0.014877 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012568 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006748 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PEG A 1 301 301 PEG PEG . 
C 3 GOL A 1 302 302 GOL GOL . 
D 3 GOL A 1 303 303 GOL GOL . 
E 3 GOL A 1 304 305 GOL GOL . 
F 4 MG A 1 305 306 MG MG . 
G 5 CA A 1 306 307 CA CA . 
H 6 CL A 1 307 308 CL CL . 
I 6 CL A 1 308 309 CL CL . 
J 6 CL A 1 309 310 CL CL . 
K 6 CL A 1 310 311 CL CL . 
L 7 HOH A 1 401 401 HOH HOH . 
L 7 HOH A 2 402 403 HOH HOH . 
L 7 HOH A 3 403 404 HOH HOH . 
L 7 HOH A 4 404 402 HOH HOH . 
L 7 HOH A 5 405 405 HOH HOH . 
L 7 HOH A 6 406 406 HOH HOH . 
L 7 HOH A 7 407 438 HOH HOH . 
L 7 HOH A 8 408 408 HOH HOH . 
L 7 HOH A 9 409 410 HOH HOH . 
L 7 HOH A 10 410 423 HOH HOH . 
L 7 HOH A 11 411 419 HOH HOH . 
L 7 HOH A 12 412 407 HOH HOH . 
L 7 HOH A 13 413 422 HOH HOH . 
L 7 HOH A 14 414 416 HOH HOH . 
L 7 HOH A 15 415 409 HOH HOH . 
L 7 HOH A 16 416 415 HOH HOH . 
L 7 HOH A 17 417 413 HOH HOH . 
L 7 HOH A 18 418 426 HOH HOH . 
L 7 HOH A 19 419 414 HOH HOH . 
L 7 HOH A 20 420 418 HOH HOH . 
L 7 HOH A 21 421 411 HOH HOH . 
L 7 HOH A 22 422 429 HOH HOH . 
L 7 HOH A 23 423 425 HOH HOH . 
L 7 HOH A 24 424 420 HOH HOH . 
L 7 HOH A 25 425 424 HOH HOH . 
L 7 HOH A 26 426 412 HOH HOH . 
L 7 HOH A 27 427 421 HOH HOH . 
L 7 HOH A 28 428 427 HOH HOH . 
L 7 HOH A 29 429 436 HOH HOH . 
L 7 HOH A 30 430 433 HOH HOH . 
L 7 HOH A 31 431 434 HOH HOH . 
L 7 HOH A 32 432 430 HOH HOH . 
L 7 HOH A 33 433 437 HOH HOH . 
L 7 HOH A 34 434 428 HOH HOH . 
L 7 HOH A 35 435 435 HOH HOH . 
L 7 HOH A 36 436 417 HOH HOH . 
L 7 HOH A 37 437 431 HOH HOH . 
L 7 HOH A 38 438 442 HOH HOH . 
L 7 HOH A 39 439 439 HOH HOH . 
L 7 HOH A 40 440 446 HOH HOH . 
L 7 HOH A 41 441 443 HOH HOH . 
L 7 HOH A 42 442 471 HOH HOH . 
L 7 HOH A 43 443 445 HOH HOH . 
L 7 HOH A 44 444 449 HOH HOH . 
L 7 HOH A 45 445 467 HOH HOH . 
L 7 HOH A 46 446 432 HOH HOH . 
L 7 HOH A 47 447 441 HOH HOH . 
L 7 HOH A 48 448 447 HOH HOH . 
L 7 HOH A 49 449 440 HOH HOH . 
L 7 HOH A 50 450 444 HOH HOH . 
L 7 HOH A 51 451 455 HOH HOH . 
L 7 HOH A 52 452 451 HOH HOH . 
L 7 HOH A 53 453 450 HOH HOH . 
L 7 HOH A 54 454 448 HOH HOH . 
L 7 HOH A 55 455 456 HOH HOH . 
L 7 HOH A 56 456 460 HOH HOH . 
L 7 HOH A 57 457 508 HOH HOH . 
L 7 HOH A 58 458 464 HOH HOH . 
L 7 HOH A 59 459 1 HOH HOH . 
L 7 HOH A 60 460 452 HOH HOH . 
L 7 HOH A 61 461 465 HOH HOH . 
L 7 HOH A 62 462 482 HOH HOH . 
L 7 HOH A 63 463 457 HOH HOH . 
L 7 HOH A 64 464 462 HOH HOH . 
L 7 HOH A 65 465 459 HOH HOH . 
L 7 HOH A 66 466 463 HOH HOH . 
L 7 HOH A 67 467 454 HOH HOH . 
L 7 HOH A 68 468 469 HOH HOH . 
L 7 HOH A 69 469 492 HOH HOH . 
L 7 HOH A 70 470 480 HOH HOH . 
L 7 HOH A 71 471 453 HOH HOH . 
L 7 HOH A 72 472 466 HOH HOH . 
L 7 HOH A 73 473 486 HOH HOH . 
L 7 HOH A 74 474 458 HOH HOH . 
L 7 HOH A 75 475 477 HOH HOH . 
L 7 HOH A 76 476 473 HOH HOH . 
L 7 HOH A 77 477 476 HOH HOH . 
L 7 HOH A 78 478 483 HOH HOH . 
L 7 HOH A 79 479 479 HOH HOH . 
L 7 HOH A 80 480 484 HOH HOH . 
L 7 HOH A 81 481 472 HOH HOH . 
L 7 HOH A 82 482 470 HOH HOH . 
L 7 HOH A 83 483 478 HOH HOH . 
L 7 HOH A 84 484 474 HOH HOH . 
L 7 HOH A 85 485 496 HOH HOH . 
L 7 HOH A 86 486 485 HOH HOH . 
L 7 HOH A 87 487 493 HOH HOH . 
L 7 HOH A 88 488 468 HOH HOH . 
L 7 HOH A 89 489 503 HOH HOH . 
L 7 HOH A 90 490 487 HOH HOH . 
L 7 HOH A 91 491 475 HOH HOH . 
L 7 HOH A 92 492 494 HOH HOH . 
L 7 HOH A 93 493 491 HOH HOH . 
L 7 HOH A 94 494 481 HOH HOH . 
L 7 HOH A 95 495 498 HOH HOH . 
L 7 HOH A 96 496 490 HOH HOH . 
L 7 HOH A 97 497 499 HOH HOH . 
L 7 HOH A 98 498 497 HOH HOH . 
L 7 HOH A 99 499 495 HOH HOH . 
L 7 HOH A 100 500 488 HOH HOH . 
L 7 HOH A 101 501 489 HOH HOH . 
L 7 HOH A 102 502 501 HOH HOH . 
L 7 HOH A 103 503 512 HOH HOH . 
L 7 HOH A 104 504 510 HOH HOH . 
L 7 HOH A 105 505 517 HOH HOH . 
L 7 HOH A 106 506 504 HOH HOH . 
L 7 HOH A 107 507 506 HOH HOH . 
L 7 HOH A 108 508 505 HOH HOH . 
L 7 HOH A 109 509 529 HOH HOH . 
L 7 HOH A 110 510 513 HOH HOH . 
L 7 HOH A 111 511 515 HOH HOH . 
L 7 HOH A 112 512 507 HOH HOH . 
L 7 HOH A 113 513 516 HOH HOH . 
L 7 HOH A 114 514 509 HOH HOH . 
L 7 HOH A 115 515 500 HOH HOH . 
L 7 HOH A 116 516 461 HOH HOH . 
L 7 HOH A 117 517 514 HOH HOH . 
L 7 HOH A 118 518 521 HOH HOH . 
L 7 HOH A 119 519 520 HOH HOH . 
L 7 HOH A 120 520 519 HOH HOH . 
L 7 HOH A 121 521 518 HOH HOH . 
L 7 HOH A 122 522 524 HOH HOH . 
L 7 HOH A 123 523 525 HOH HOH . 
L 7 HOH A 124 524 523 HOH HOH . 
L 7 HOH A 125 525 528 HOH HOH . 
L 7 HOH A 126 526 532 HOH HOH . 
L 7 HOH A 127 527 526 HOH HOH . 
L 7 HOH A 128 528 522 HOH HOH . 
L 7 HOH A 129 529 527 HOH HOH . 
L 7 HOH A 130 530 531 HOH HOH . 
L 7 HOH A 131 531 534 HOH HOH . 
L 7 HOH A 132 532 535 HOH HOH . 
L 7 HOH A 133 533 533 HOH HOH . 
L 7 HOH A 134 534 538 HOH HOH . 
L 7 HOH A 135 535 536 HOH HOH . 
L 7 HOH A 136 536 542 HOH HOH . 
L 7 HOH A 137 537 541 HOH HOH . 
L 7 HOH A 138 538 540 HOH HOH . 
L 7 HOH A 139 539 544 HOH HOH . 
L 7 HOH A 140 540 546 HOH HOH . 
L 7 HOH A 141 541 543 HOH HOH . 
L 7 HOH A 142 542 539 HOH HOH . 
L 7 HOH A 143 543 549 HOH HOH . 
L 7 HOH A 144 544 548 HOH HOH . 
L 7 HOH A 145 545 545 HOH HOH . 
L 7 HOH A 146 546 553 HOH HOH . 
L 7 HOH A 147 547 550 HOH HOH . 
L 7 HOH A 148 548 552 HOH HOH . 
L 7 HOH A 149 549 551 HOH HOH . 
L 7 HOH A 150 550 530 HOH HOH . 
L 7 HOH A 151 551 554 HOH HOH . 
L 7 HOH A 152 552 555 HOH HOH . 
L 7 HOH A 153 553 556 HOH HOH . 
L 7 HOH A 154 554 557 HOH HOH . 
L 7 HOH A 155 555 558 HOH HOH . 
L 7 HOH A 156 556 559 HOH HOH . 
L 7 HOH A 157 557 563 HOH HOH . 
L 7 HOH A 158 558 560 HOH HOH . 
L 7 HOH A 159 559 561 HOH HOH . 
L 7 HOH A 160 560 562 HOH HOH . 
L 7 HOH A 161 561 564 HOH HOH . 
L 7 HOH A 162 562 565 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               0.84 
_atom_site.Cartn_y               -11.623 
_atom_site.Cartn_z               37.293 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        31.18 
_atom_site.pdbx_formal_charge    0 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           306 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#