data_8PNH # _model_server_result.job_id vco1iApZPsiNviTNlmd3Kg _model_server_result.datetime_utc '2024-10-09 22:20:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pnh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8PNH # _exptl.entry_id 8PNH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.199 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PNH _cell.length_a 41.511 _cell.length_b 74.282 _cell.length_c 129.352 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PNH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 133 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 133 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 212 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 212 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.057 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H12 O6' _chem_comp.formula_weight 228.199 _chem_comp.id TSA _chem_comp.mon_nstd_flag . _chem_comp.name '8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TSA sing 358 n n C1 C6 TSA sing 359 n n C1 C9 TSA sing 360 n n C1 C10 TSA sing 361 n n C2 C3 TSA doub 362 n n C2 H2 TSA sing 363 n n C3 C4 TSA sing 364 n n C3 H3 TSA sing 365 n n C4 O5 TSA sing 366 n n C4 C5 TSA sing 367 n n C4 H4 TSA sing 368 n n O5 HO5 TSA sing 369 n n C5 C6 TSA sing 370 n n C5 O7 TSA sing 371 n n C5 H5 TSA sing 372 n n C6 H61 TSA sing 373 n n C6 H62 TSA sing 374 n n O7 C8 TSA sing 375 n n C8 C9 TSA sing 376 n n C8 C11 TSA sing 377 n n C8 H8 TSA sing 378 n n C9 H91 TSA sing 379 n n C9 H92 TSA sing 380 n n C10 O1 TSA doub 381 n n C10 O2 TSA sing 382 n n O2 HO2 TSA sing 383 n n C11 O3 TSA doub 384 n n C11 O4 TSA sing 385 n n O4 HO4 TSA sing 386 n n # _atom_sites.entry_id 8PNH _atom_sites.fract_transf_matrix[1][1] 0.02409 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TSA A 1 501 430 TSA TSA . C 3 PPY A 1 502 431 PPY PPY . D 4 SO4 A 1 503 1 SO4 SO4 . E 5 HOH A 1 601 66 HOH HOH . E 5 HOH A 2 602 69 HOH HOH . E 5 HOH A 3 603 8 HOH HOH . E 5 HOH A 4 604 12 HOH HOH . E 5 HOH A 5 605 68 HOH HOH . E 5 HOH A 6 606 10 HOH HOH . E 5 HOH A 7 607 65 HOH HOH . E 5 HOH A 8 608 61 HOH HOH . E 5 HOH A 9 609 59 HOH HOH . E 5 HOH A 10 610 67 HOH HOH . E 5 HOH A 11 611 18 HOH HOH . E 5 HOH A 12 612 64 HOH HOH . E 5 HOH A 13 613 3 HOH HOH . E 5 HOH A 14 614 53 HOH HOH . E 5 HOH A 15 615 4 HOH HOH . E 5 HOH A 16 616 6 HOH HOH . E 5 HOH A 17 617 7 HOH HOH . E 5 HOH A 18 618 26 HOH HOH . E 5 HOH A 19 619 1 HOH HOH . E 5 HOH A 20 620 9 HOH HOH . E 5 HOH A 21 621 46 HOH HOH . E 5 HOH A 22 622 2 HOH HOH . E 5 HOH A 23 623 16 HOH HOH . E 5 HOH A 24 624 24 HOH HOH . E 5 HOH A 25 625 5 HOH HOH . E 5 HOH A 26 626 63 HOH HOH . E 5 HOH A 27 627 54 HOH HOH . E 5 HOH A 28 628 38 HOH HOH . E 5 HOH A 29 629 23 HOH HOH . E 5 HOH A 30 630 55 HOH HOH . E 5 HOH A 31 631 30 HOH HOH . E 5 HOH A 32 632 42 HOH HOH . E 5 HOH A 33 633 47 HOH HOH . E 5 HOH A 34 634 40 HOH HOH . E 5 HOH A 35 635 57 HOH HOH . E 5 HOH A 36 636 11 HOH HOH . E 5 HOH A 37 637 44 HOH HOH . E 5 HOH A 38 638 35 HOH HOH . E 5 HOH A 39 639 34 HOH HOH . E 5 HOH A 40 640 45 HOH HOH . E 5 HOH A 41 641 27 HOH HOH . E 5 HOH A 42 642 33 HOH HOH . E 5 HOH A 43 643 41 HOH HOH . E 5 HOH A 44 644 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TSA . . . B 2 -5.068 -5.774 -2.522 1 65.46 0 C1 TSA 501 A 1 HETATM 2 C C2 TSA . . . B 2 -4.036 -6.428 -1.614 1 59.8 0 C2 TSA 501 A 1 HETATM 3 C C3 TSA . . . B 2 -4.108 -6.343 -0.277 1 65.23 0 C3 TSA 501 A 1 HETATM 4 C C4 TSA . . . B 2 -5.155 -5.567 0.473 1 59.49 0 C4 TSA 501 A 1 HETATM 5 O O5 TSA . . . B 2 -4.517 -4.621 1.345 1 54.4 0 O5 TSA 501 A 1 HETATM 6 C C5 TSA . . . B 2 -6.152 -4.863 -0.471 1 59.87 0 C5 TSA 501 A 1 HETATM 7 C C6 TSA . . . B 2 -5.56 -4.485 -1.827 1 61.49 0 C6 TSA 501 A 1 HETATM 8 O O7 TSA . . . B 2 -7.333 -5.681 -0.627 1 63.18 0 O7 TSA 501 A 1 HETATM 9 C C8 TSA . . . B 2 -7.221 -6.857 -1.471 1 67.5 0 C8 TSA 501 A 1 HETATM 10 C C9 TSA . . . B 2 -6.29 -6.705 -2.679 1 60.64 0 C9 TSA 501 A 1 HETATM 11 C C10 TSA . . . B 2 -4.575 -5.647 -3.973 1 69.76 0 C10 TSA 501 A 1 HETATM 12 O O1 TSA . . . B 2 -5.197 -4.96 -4.744 1 82.25 0 O1 TSA 501 A 1 HETATM 13 O O2 TSA . . . B 2 -3.627 -6.278 -4.384 1 62.92 0 O2 TSA 501 A 1 HETATM 14 C C11 TSA . . . B 2 -6.846 -8.149 -0.731 1 73.95 0 C11 TSA 501 A 1 HETATM 15 O O3 TSA . . . B 2 -6.738 -9.179 -1.379 1 79.18 0 O3 TSA 501 A 1 HETATM 16 O O4 TSA . . . B 2 -6.694 -8.165 0.468 1 73.8 0 O4 TSA 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #