data_8PNH # _model_server_result.job_id kll5IncUDbHuamnZ8ZhlWA _model_server_result.datetime_utc '2024-10-09 22:17:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pnh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 8PNH # _exptl.entry_id 8PNH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.158 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-PHENYLPYRUVIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PNH _cell.length_a 41.511 _cell.length_b 74.282 _cell.length_c 129.352 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PNH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 133 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 133 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 212 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 212 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.057 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C9 H8 O3' _chem_comp.formula_weight 164.158 _chem_comp.id PPY _chem_comp.mon_nstd_flag . _chem_comp.name '3-PHENYLPYRUVIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PPY doub 260 n n C1 O2 PPY sing 261 n n C1 C2 PPY sing 262 n n O2 HO2 PPY sing 263 n n C2 O3 PPY doub 264 n n C2 C3 PPY sing 265 n n C3 C1' PPY sing 266 n n C3 H31 PPY sing 267 n n C3 H32 PPY sing 268 n n C1' C2' PPY doub 269 n y C1' C6' PPY sing 270 n y C2' C3' PPY sing 271 n y C2' H2' PPY sing 272 n n C3' C4' PPY doub 273 n y C3' H3' PPY sing 274 n n C4' C5' PPY sing 275 n y C4' H4' PPY sing 276 n n C5' C6' PPY doub 277 n y C5' H5' PPY sing 278 n n C6' H6' PPY sing 279 n n # _atom_sites.entry_id 8PNH _atom_sites.fract_transf_matrix[1][1] 0.02409 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TSA A 1 501 430 TSA TSA . C 3 PPY A 1 502 431 PPY PPY . D 4 SO4 A 1 503 1 SO4 SO4 . E 5 HOH A 1 601 66 HOH HOH . E 5 HOH A 2 602 69 HOH HOH . E 5 HOH A 3 603 8 HOH HOH . E 5 HOH A 4 604 12 HOH HOH . E 5 HOH A 5 605 68 HOH HOH . E 5 HOH A 6 606 10 HOH HOH . E 5 HOH A 7 607 65 HOH HOH . E 5 HOH A 8 608 61 HOH HOH . E 5 HOH A 9 609 59 HOH HOH . E 5 HOH A 10 610 67 HOH HOH . E 5 HOH A 11 611 18 HOH HOH . E 5 HOH A 12 612 64 HOH HOH . E 5 HOH A 13 613 3 HOH HOH . E 5 HOH A 14 614 53 HOH HOH . E 5 HOH A 15 615 4 HOH HOH . E 5 HOH A 16 616 6 HOH HOH . E 5 HOH A 17 617 7 HOH HOH . E 5 HOH A 18 618 26 HOH HOH . E 5 HOH A 19 619 1 HOH HOH . E 5 HOH A 20 620 9 HOH HOH . E 5 HOH A 21 621 46 HOH HOH . E 5 HOH A 22 622 2 HOH HOH . E 5 HOH A 23 623 16 HOH HOH . E 5 HOH A 24 624 24 HOH HOH . E 5 HOH A 25 625 5 HOH HOH . E 5 HOH A 26 626 63 HOH HOH . E 5 HOH A 27 627 54 HOH HOH . E 5 HOH A 28 628 38 HOH HOH . E 5 HOH A 29 629 23 HOH HOH . E 5 HOH A 30 630 55 HOH HOH . E 5 HOH A 31 631 30 HOH HOH . E 5 HOH A 32 632 42 HOH HOH . E 5 HOH A 33 633 47 HOH HOH . E 5 HOH A 34 634 40 HOH HOH . E 5 HOH A 35 635 57 HOH HOH . E 5 HOH A 36 636 11 HOH HOH . E 5 HOH A 37 637 44 HOH HOH . E 5 HOH A 38 638 35 HOH HOH . E 5 HOH A 39 639 34 HOH HOH . E 5 HOH A 40 640 45 HOH HOH . E 5 HOH A 41 641 27 HOH HOH . E 5 HOH A 42 642 33 HOH HOH . E 5 HOH A 43 643 41 HOH HOH . E 5 HOH A 44 644 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PPY . . . C 3 -14.75 0.136 -46.087 0.8 53.4 0 C1 PPY 502 A 1 HETATM 2 O O1 PPY . . . C 3 -14.851 0.101 -47.285 0.8 56.89 0 O1 PPY 502 A 1 HETATM 3 O O2 PPY . . . C 3 -15.366 0.94 -45.425 0.8 59.52 0 O2 PPY 502 A 1 HETATM 4 C C2 PPY . . . C 3 -13.79 -0.543 -45.568 0.8 54.51 0 C2 PPY 502 A 1 HETATM 5 O O3 PPY . . . C 3 -13.624 -1.684 -45.995 0.8 46.73 0 O3 PPY 502 A 1 HETATM 6 C C3 PPY . . . C 3 -12.721 0.142 -44.683 0.8 49.87 0 C3 PPY 502 A 1 HETATM 7 C C1' PPY . . . C 3 -12.387 -0.45 -43.323 0.8 47.73 0 C1' PPY 502 A 1 HETATM 8 C C2' PPY . . . C 3 -11.087 -0.813 -43.006 0.8 43.03 0 C2' PPY 502 A 1 HETATM 9 C C3' PPY . . . C 3 -10.777 -1.353 -41.769 0.8 40 0 C3' PPY 502 A 1 HETATM 10 C C4' PPY . . . C 3 -11.75 -1.502 -40.812 0.8 45.58 0 C4' PPY 502 A 1 HETATM 11 C C5' PPY . . . C 3 -13.038 -1.137 -41.101 0.8 45.29 0 C5' PPY 502 A 1 HETATM 12 C C6' PPY . . . C 3 -13.351 -0.596 -42.339 0.8 48.39 0 C6' PPY 502 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #