data_8PNJ # _model_server_result.job_id Ar6wfa7IgOPnaPK5fhziHw _model_server_result.datetime_utc '2024-11-05 19:30:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pnj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8PNJ # _exptl.entry_id 8PNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.199 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.484 _cell.angle_gamma 90 _cell.entry_id 8PNJ _cell.length_a 48.608 _cell.length_b 105.344 _cell.length_c 55.776 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 286 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 286 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 365 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 365 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.092 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H12 O6' _chem_comp.formula_weight 228.199 _chem_comp.id TSA _chem_comp.mon_nstd_flag . _chem_comp.name '8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TSA sing 363 n n C1 C6 TSA sing 364 n n C1 C9 TSA sing 365 n n C1 C10 TSA sing 366 n n C2 C3 TSA doub 367 n n C2 H2 TSA sing 368 n n C3 C4 TSA sing 369 n n C3 H3 TSA sing 370 n n C4 O5 TSA sing 371 n n C4 C5 TSA sing 372 n n C4 H4 TSA sing 373 n n O5 HO5 TSA sing 374 n n C5 C6 TSA sing 375 n n C5 O7 TSA sing 376 n n C5 H5 TSA sing 377 n n C6 H61 TSA sing 378 n n C6 H62 TSA sing 379 n n O7 C8 TSA sing 380 n n C8 C9 TSA sing 381 n n C8 C11 TSA sing 382 n n C8 H8 TSA sing 383 n n C9 H91 TSA sing 384 n n C9 H92 TSA sing 385 n n C10 O1 TSA doub 386 n n C10 O2 TSA sing 387 n n O2 HO2 TSA sing 388 n n C11 O3 TSA doub 389 n n C11 O4 TSA sing 390 n n O4 HO4 TSA sing 391 n n # _atom_sites.entry_id 8PNJ _atom_sites.fract_transf_matrix[1][1] 0.020573 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008515 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TSA A 1 501 422 TSA TSA . C 3 PEG A 1 502 424 PEG PEG . D 3 PEG A 1 503 425 PEG PEG . E 4 GOL A 1 504 427 GOL GOL . F 4 GOL A 1 505 428 GOL GOL . G 5 CL A 1 506 1 CL CL . H 5 CL A 1 507 4 CL CL . I 6 HOH A 1 601 56 HOH HOH . I 6 HOH A 2 602 10 HOH HOH . I 6 HOH A 3 603 11 HOH HOH . I 6 HOH A 4 604 50 HOH HOH . I 6 HOH A 5 605 20 HOH HOH . I 6 HOH A 6 606 44 HOH HOH . I 6 HOH A 7 607 15 HOH HOH . I 6 HOH A 8 608 46 HOH HOH . I 6 HOH A 9 609 22 HOH HOH . I 6 HOH A 10 610 49 HOH HOH . I 6 HOH A 11 611 55 HOH HOH . I 6 HOH A 12 612 16 HOH HOH . I 6 HOH A 13 613 24 HOH HOH . I 6 HOH A 14 614 47 HOH HOH . I 6 HOH A 15 615 36 HOH HOH . I 6 HOH A 16 616 13 HOH HOH . I 6 HOH A 17 617 28 HOH HOH . I 6 HOH A 18 618 4 HOH HOH . I 6 HOH A 19 619 9 HOH HOH . I 6 HOH A 20 620 19 HOH HOH . I 6 HOH A 21 621 54 HOH HOH . I 6 HOH A 22 622 25 HOH HOH . I 6 HOH A 23 623 29 HOH HOH . I 6 HOH A 24 624 14 HOH HOH . I 6 HOH A 25 625 12 HOH HOH . I 6 HOH A 26 626 18 HOH HOH . I 6 HOH A 27 627 5 HOH HOH . I 6 HOH A 28 628 48 HOH HOH . I 6 HOH A 29 629 27 HOH HOH . I 6 HOH A 30 630 21 HOH HOH . I 6 HOH A 31 631 41 HOH HOH . I 6 HOH A 32 632 26 HOH HOH . I 6 HOH A 33 633 39 HOH HOH . I 6 HOH A 34 634 43 HOH HOH . I 6 HOH A 35 635 8 HOH HOH . I 6 HOH A 36 636 53 HOH HOH . I 6 HOH A 37 637 42 HOH HOH . I 6 HOH A 38 638 45 HOH HOH . I 6 HOH A 39 639 37 HOH HOH . I 6 HOH A 40 640 57 HOH HOH . I 6 HOH A 41 641 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TSA . . . B 2 6.27 13.253 41.656 1 40.99 0 C1 TSA 501 A 1 HETATM 2 C C2 TSA . . . B 2 6.533 12.023 42.515 1 39.17 0 C2 TSA 501 A 1 HETATM 3 C C3 TSA . . . B 2 7.656 11.325 42.452 1 36.74 0 C3 TSA 501 A 1 HETATM 4 C C4 TSA . . . B 2 8.82 11.715 41.593 1 38.15 0 C4 TSA 501 A 1 HETATM 5 O O5 TSA . . . B 2 9.189 10.614 40.753 1 35.07 0 O5 TSA 501 A 1 HETATM 6 C C5 TSA . . . B 2 8.531 12.963 40.739 1 39.82 0 C5 TSA 501 A 1 HETATM 7 C C6 TSA . . . B 2 7.058 13.086 40.343 1 40.48 0 C6 TSA 501 A 1 HETATM 8 O O7 TSA . . . B 2 9.034 14.143 41.412 1 39.17 0 O7 TSA 501 A 1 HETATM 9 C C8 TSA . . . B 2 8.251 14.64 42.52 1 39.16 0 C8 TSA 501 A 1 HETATM 10 C C9 TSA . . . B 2 6.754 14.601 42.234 1 36.91 0 C9 TSA 501 A 1 HETATM 11 C C10 TSA . . . B 2 4.75 13.405 41.604 1 46.11 0 C10 TSA 501 A 1 HETATM 12 O O1 TSA . . . B 2 4.098 13.069 42.608 1 43.24 0 O1 TSA 501 A 1 HETATM 13 O O2 TSA . . . B 2 4.207 13.899 40.613 1 43 0 O2 TSA 501 A 1 HETATM 14 C C11 TSA . . . B 2 8.634 13.957 43.849 1 40.94 0 C11 TSA 501 A 1 HETATM 15 O O3 TSA . . . B 2 7.794 13.833 44.749 1 36.99 0 O3 TSA 501 A 1 HETATM 16 O O4 TSA . . . B 2 9.797 13.586 44.017 1 41.22 0 O4 TSA 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #