data_8PNJ # _model_server_result.job_id -i6FFjhhCawjQPaHcC62GA _model_server_result.datetime_utc '2024-11-05 19:30:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pnj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 8PNJ # _exptl.entry_id 8PNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.484 _cell.angle_gamma 90 _cell.entry_id 8PNJ _cell.length_a 48.608 _cell.length_b 105.344 _cell.length_c 55.776 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 286 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 286 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 365 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 365 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.092 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8PNJ _atom_sites.fract_transf_matrix[1][1] 0.020573 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008515 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TSA A 1 501 422 TSA TSA . C 3 PEG A 1 502 424 PEG PEG . D 3 PEG A 1 503 425 PEG PEG . E 4 GOL A 1 504 427 GOL GOL . F 4 GOL A 1 505 428 GOL GOL . G 5 CL A 1 506 1 CL CL . H 5 CL A 1 507 4 CL CL . I 6 HOH A 1 601 56 HOH HOH . I 6 HOH A 2 602 10 HOH HOH . I 6 HOH A 3 603 11 HOH HOH . I 6 HOH A 4 604 50 HOH HOH . I 6 HOH A 5 605 20 HOH HOH . I 6 HOH A 6 606 44 HOH HOH . I 6 HOH A 7 607 15 HOH HOH . I 6 HOH A 8 608 46 HOH HOH . I 6 HOH A 9 609 22 HOH HOH . I 6 HOH A 10 610 49 HOH HOH . I 6 HOH A 11 611 55 HOH HOH . I 6 HOH A 12 612 16 HOH HOH . I 6 HOH A 13 613 24 HOH HOH . I 6 HOH A 14 614 47 HOH HOH . I 6 HOH A 15 615 36 HOH HOH . I 6 HOH A 16 616 13 HOH HOH . I 6 HOH A 17 617 28 HOH HOH . I 6 HOH A 18 618 4 HOH HOH . I 6 HOH A 19 619 9 HOH HOH . I 6 HOH A 20 620 19 HOH HOH . I 6 HOH A 21 621 54 HOH HOH . I 6 HOH A 22 622 25 HOH HOH . I 6 HOH A 23 623 29 HOH HOH . I 6 HOH A 24 624 14 HOH HOH . I 6 HOH A 25 625 12 HOH HOH . I 6 HOH A 26 626 18 HOH HOH . I 6 HOH A 27 627 5 HOH HOH . I 6 HOH A 28 628 48 HOH HOH . I 6 HOH A 29 629 27 HOH HOH . I 6 HOH A 30 630 21 HOH HOH . I 6 HOH A 31 631 41 HOH HOH . I 6 HOH A 32 632 26 HOH HOH . I 6 HOH A 33 633 39 HOH HOH . I 6 HOH A 34 634 43 HOH HOH . I 6 HOH A 35 635 8 HOH HOH . I 6 HOH A 36 636 53 HOH HOH . I 6 HOH A 37 637 42 HOH HOH . I 6 HOH A 38 638 45 HOH HOH . I 6 HOH A 39 639 37 HOH HOH . I 6 HOH A 40 640 57 HOH HOH . I 6 HOH A 41 641 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 7.846 9.381 -3.207 0.69 20.26 0 C1 GOL 505 A 1 HETATM 2 O O1 GOL . . . F 4 7.111 8.473 -2.398 0.69 18.99 0 O1 GOL 505 A 1 HETATM 3 C C2 GOL . . . F 4 8.87 10.198 -2.441 0.69 19.81 0 C2 GOL 505 A 1 HETATM 4 O O2 GOL . . . F 4 9.774 10.746 -3.382 0.69 18.73 0 O2 GOL 505 A 1 HETATM 5 C C3 GOL . . . F 4 9.611 9.418 -1.372 0.69 20.92 0 C3 GOL 505 A 1 HETATM 6 O O3 GOL . . . F 4 10.542 10.2 -0.629 0.69 20.02 0 O3 GOL 505 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #