data_8PNX # _model_server_result.job_id Useh1F7RyHwO7t4KmsW9fg _model_server_result.datetime_utc '2024-11-24 09:45:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pnx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8PNX # _exptl.entry_id 8PNX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8PNX _cell.length_a 105.437 _cell.length_b 105.437 _cell.length_c 51.144 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PNX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -17.048 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D NA NA . A NA 303 1_555 F O HOH . A HOH 402 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc2 D NA NA . A NA 303 1_555 F O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? metalc ? metalc3 D NA NA . A NA 303 1_555 F O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc4 D NA NA . A NA 303 1_555 F O HOH . A HOH 547 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? metalc ? metalc5 E NA NA . A NA 304 1_555 F O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.036 ? metalc ? metalc6 E NA NA . A NA 304 1_555 F O HOH . A HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? metalc ? metalc7 E NA NA . A NA 304 1_555 F O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8PNX _atom_sites.fract_transf_matrix[1][1] 0.009484 _atom_sites.fract_transf_matrix[1][2] 0.005476 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019553 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PMP A 1 301 302 PMP PMP . C 3 EDO A 1 302 303 EDO EDO . D 4 NA A 1 303 1 NA NA . E 4 NA A 1 304 2 NA NA . F 5 HOH A 1 401 43 HOH HOH . F 5 HOH A 2 402 206 HOH HOH . F 5 HOH A 3 403 251 HOH HOH . F 5 HOH A 4 404 23 HOH HOH . F 5 HOH A 5 405 94 HOH HOH . F 5 HOH A 6 406 247 HOH HOH . F 5 HOH A 7 407 248 HOH HOH . F 5 HOH A 8 408 55 HOH HOH . F 5 HOH A 9 409 153 HOH HOH . F 5 HOH A 10 410 171 HOH HOH . F 5 HOH A 11 411 13 HOH HOH . F 5 HOH A 12 412 228 HOH HOH . F 5 HOH A 13 413 105 HOH HOH . F 5 HOH A 14 414 231 HOH HOH . F 5 HOH A 15 415 49 HOH HOH . F 5 HOH A 16 416 155 HOH HOH . F 5 HOH A 17 417 207 HOH HOH . F 5 HOH A 18 418 102 HOH HOH . F 5 HOH A 19 419 234 HOH HOH . F 5 HOH A 20 420 47 HOH HOH . F 5 HOH A 21 421 170 HOH HOH . F 5 HOH A 22 422 176 HOH HOH . F 5 HOH A 23 423 182 HOH HOH . F 5 HOH A 24 424 132 HOH HOH . F 5 HOH A 25 425 29 HOH HOH . F 5 HOH A 26 426 3 HOH HOH . F 5 HOH A 27 427 148 HOH HOH . F 5 HOH A 28 428 253 HOH HOH . F 5 HOH A 29 429 201 HOH HOH . F 5 HOH A 30 430 258 HOH HOH . F 5 HOH A 31 431 10 HOH HOH . F 5 HOH A 32 432 44 HOH HOH . F 5 HOH A 33 433 100 HOH HOH . F 5 HOH A 34 434 52 HOH HOH . F 5 HOH A 35 435 61 HOH HOH . F 5 HOH A 36 436 250 HOH HOH . F 5 HOH A 37 437 145 HOH HOH . F 5 HOH A 38 438 104 HOH HOH . F 5 HOH A 39 439 36 HOH HOH . F 5 HOH A 40 440 128 HOH HOH . F 5 HOH A 41 441 199 HOH HOH . F 5 HOH A 42 442 133 HOH HOH . F 5 HOH A 43 443 263 HOH HOH . F 5 HOH A 44 444 18 HOH HOH . F 5 HOH A 45 445 236 HOH HOH . F 5 HOH A 46 446 241 HOH HOH . F 5 HOH A 47 447 205 HOH HOH . F 5 HOH A 48 448 93 HOH HOH . F 5 HOH A 49 449 252 HOH HOH . F 5 HOH A 50 450 57 HOH HOH . F 5 HOH A 51 451 84 HOH HOH . F 5 HOH A 52 452 124 HOH HOH . F 5 HOH A 53 453 188 HOH HOH . F 5 HOH A 54 454 9 HOH HOH . F 5 HOH A 55 455 7 HOH HOH . F 5 HOH A 56 456 235 HOH HOH . F 5 HOH A 57 457 160 HOH HOH . F 5 HOH A 58 458 229 HOH HOH . F 5 HOH A 59 459 78 HOH HOH . F 5 HOH A 60 460 95 HOH HOH . F 5 HOH A 61 461 173 HOH HOH . F 5 HOH A 62 462 21 HOH HOH . F 5 HOH A 63 463 32 HOH HOH . F 5 HOH A 64 464 129 HOH HOH . F 5 HOH A 65 465 172 HOH HOH . F 5 HOH A 66 466 214 HOH HOH . F 5 HOH A 67 467 31 HOH HOH . F 5 HOH A 68 468 175 HOH HOH . F 5 HOH A 69 469 227 HOH HOH . F 5 HOH A 70 470 65 HOH HOH . F 5 HOH A 71 471 15 HOH HOH . F 5 HOH A 72 472 62 HOH HOH . F 5 HOH A 73 473 75 HOH HOH . F 5 HOH A 74 474 254 HOH HOH . F 5 HOH A 75 475 19 HOH HOH . F 5 HOH A 76 476 2 HOH HOH . F 5 HOH A 77 477 118 HOH HOH . F 5 HOH A 78 478 120 HOH HOH . F 5 HOH A 79 479 51 HOH HOH . F 5 HOH A 80 480 149 HOH HOH . F 5 HOH A 81 481 16 HOH HOH . F 5 HOH A 82 482 189 HOH HOH . F 5 HOH A 83 483 137 HOH HOH . F 5 HOH A 84 484 121 HOH HOH . F 5 HOH A 85 485 246 HOH HOH . F 5 HOH A 86 486 5 HOH HOH . F 5 HOH A 87 487 92 HOH HOH . F 5 HOH A 88 488 187 HOH HOH . F 5 HOH A 89 489 4 HOH HOH . F 5 HOH A 90 490 86 HOH HOH . F 5 HOH A 91 491 74 HOH HOH . F 5 HOH A 92 492 50 HOH HOH . F 5 HOH A 93 493 38 HOH HOH . F 5 HOH A 94 494 87 HOH HOH . F 5 HOH A 95 495 45 HOH HOH . F 5 HOH A 96 496 26 HOH HOH . F 5 HOH A 97 497 221 HOH HOH . F 5 HOH A 98 498 79 HOH HOH . F 5 HOH A 99 499 6 HOH HOH . F 5 HOH A 100 500 216 HOH HOH . F 5 HOH A 101 501 96 HOH HOH . F 5 HOH A 102 502 82 HOH HOH . F 5 HOH A 103 503 154 HOH HOH . F 5 HOH A 104 504 72 HOH HOH . F 5 HOH A 105 505 123 HOH HOH . F 5 HOH A 106 506 69 HOH HOH . F 5 HOH A 107 507 259 HOH HOH . F 5 HOH A 108 508 80 HOH HOH . F 5 HOH A 109 509 192 HOH HOH . F 5 HOH A 110 510 58 HOH HOH . F 5 HOH A 111 511 204 HOH HOH . F 5 HOH A 112 512 238 HOH HOH . F 5 HOH A 113 513 196 HOH HOH . F 5 HOH A 114 514 166 HOH HOH . F 5 HOH A 115 515 144 HOH HOH . F 5 HOH A 116 516 110 HOH HOH . F 5 HOH A 117 517 197 HOH HOH . F 5 HOH A 118 518 40 HOH HOH . F 5 HOH A 119 519 243 HOH HOH . F 5 HOH A 120 520 186 HOH HOH . F 5 HOH A 121 521 20 HOH HOH . F 5 HOH A 122 522 222 HOH HOH . F 5 HOH A 123 523 136 HOH HOH . F 5 HOH A 124 524 85 HOH HOH . F 5 HOH A 125 525 17 HOH HOH . F 5 HOH A 126 526 76 HOH HOH . F 5 HOH A 127 527 25 HOH HOH . F 5 HOH A 128 528 88 HOH HOH . F 5 HOH A 129 529 184 HOH HOH . F 5 HOH A 130 530 101 HOH HOH . F 5 HOH A 131 531 224 HOH HOH . F 5 HOH A 132 532 66 HOH HOH . F 5 HOH A 133 533 191 HOH HOH . F 5 HOH A 134 534 59 HOH HOH . F 5 HOH A 135 535 159 HOH HOH . F 5 HOH A 136 536 181 HOH HOH . F 5 HOH A 137 537 220 HOH HOH . F 5 HOH A 138 538 127 HOH HOH . F 5 HOH A 139 539 210 HOH HOH . F 5 HOH A 140 540 67 HOH HOH . F 5 HOH A 141 541 143 HOH HOH . F 5 HOH A 142 542 130 HOH HOH . F 5 HOH A 143 543 125 HOH HOH . F 5 HOH A 144 544 41 HOH HOH . F 5 HOH A 145 545 89 HOH HOH . F 5 HOH A 146 546 73 HOH HOH . F 5 HOH A 147 547 179 HOH HOH . F 5 HOH A 148 548 107 HOH HOH . F 5 HOH A 149 549 98 HOH HOH . F 5 HOH A 150 550 71 HOH HOH . F 5 HOH A 151 551 42 HOH HOH . F 5 HOH A 152 552 103 HOH HOH . F 5 HOH A 153 553 77 HOH HOH . F 5 HOH A 154 554 223 HOH HOH . F 5 HOH A 155 555 30 HOH HOH . F 5 HOH A 156 556 135 HOH HOH . F 5 HOH A 157 557 152 HOH HOH . F 5 HOH A 158 558 260 HOH HOH . F 5 HOH A 159 559 54 HOH HOH . F 5 HOH A 160 560 27 HOH HOH . F 5 HOH A 161 561 233 HOH HOH . F 5 HOH A 162 562 99 HOH HOH . F 5 HOH A 163 563 226 HOH HOH . F 5 HOH A 164 564 165 HOH HOH . F 5 HOH A 165 565 185 HOH HOH . F 5 HOH A 166 566 157 HOH HOH . F 5 HOH A 167 567 63 HOH HOH . F 5 HOH A 168 568 218 HOH HOH . F 5 HOH A 169 569 39 HOH HOH . F 5 HOH A 170 570 83 HOH HOH . F 5 HOH A 171 571 174 HOH HOH . F 5 HOH A 172 572 134 HOH HOH . F 5 HOH A 173 573 48 HOH HOH . F 5 HOH A 174 574 177 HOH HOH . F 5 HOH A 175 575 68 HOH HOH . F 5 HOH A 176 576 64 HOH HOH . F 5 HOH A 177 577 215 HOH HOH . F 5 HOH A 178 578 156 HOH HOH . F 5 HOH A 179 579 162 HOH HOH . F 5 HOH A 180 580 97 HOH HOH . F 5 HOH A 181 581 117 HOH HOH . F 5 HOH A 182 582 111 HOH HOH . F 5 HOH A 183 583 198 HOH HOH . F 5 HOH A 184 584 139 HOH HOH . F 5 HOH A 185 585 91 HOH HOH . F 5 HOH A 186 586 180 HOH HOH . F 5 HOH A 187 587 219 HOH HOH . F 5 HOH A 188 588 225 HOH HOH . F 5 HOH A 189 589 244 HOH HOH . F 5 HOH A 190 590 217 HOH HOH . F 5 HOH A 191 591 11 HOH HOH . F 5 HOH A 192 592 131 HOH HOH . F 5 HOH A 193 593 168 HOH HOH . F 5 HOH A 194 594 119 HOH HOH . F 5 HOH A 195 595 208 HOH HOH . F 5 HOH A 196 596 14 HOH HOH . F 5 HOH A 197 597 257 HOH HOH . F 5 HOH A 198 598 56 HOH HOH . F 5 HOH A 199 599 169 HOH HOH . F 5 HOH A 200 600 90 HOH HOH . F 5 HOH A 201 601 161 HOH HOH . F 5 HOH A 202 602 12 HOH HOH . F 5 HOH A 203 603 249 HOH HOH . F 5 HOH A 204 604 212 HOH HOH . F 5 HOH A 205 605 164 HOH HOH . F 5 HOH A 206 606 81 HOH HOH . F 5 HOH A 207 607 151 HOH HOH . F 5 HOH A 208 608 70 HOH HOH . F 5 HOH A 209 609 242 HOH HOH . F 5 HOH A 210 610 46 HOH HOH . F 5 HOH A 211 611 126 HOH HOH . F 5 HOH A 212 612 34 HOH HOH . F 5 HOH A 213 613 195 HOH HOH . F 5 HOH A 214 614 112 HOH HOH . F 5 HOH A 215 615 146 HOH HOH . F 5 HOH A 216 616 211 HOH HOH . F 5 HOH A 217 617 138 HOH HOH . F 5 HOH A 218 618 141 HOH HOH . F 5 HOH A 219 619 53 HOH HOH . F 5 HOH A 220 620 209 HOH HOH . F 5 HOH A 221 621 22 HOH HOH . F 5 HOH A 222 622 37 HOH HOH . F 5 HOH A 223 623 35 HOH HOH . F 5 HOH A 224 624 190 HOH HOH . F 5 HOH A 225 625 147 HOH HOH . F 5 HOH A 226 626 142 HOH HOH . F 5 HOH A 227 627 203 HOH HOH . F 5 HOH A 228 628 265 HOH HOH . F 5 HOH A 229 629 60 HOH HOH . F 5 HOH A 230 630 122 HOH HOH . F 5 HOH A 231 631 158 HOH HOH . F 5 HOH A 232 632 262 HOH HOH . F 5 HOH A 233 633 140 HOH HOH . F 5 HOH A 234 634 109 HOH HOH . F 5 HOH A 235 635 237 HOH HOH . F 5 HOH A 236 636 114 HOH HOH . F 5 HOH A 237 637 245 HOH HOH . F 5 HOH A 238 638 163 HOH HOH . F 5 HOH A 239 639 264 HOH HOH . F 5 HOH A 240 640 200 HOH HOH . F 5 HOH A 241 641 213 HOH HOH . F 5 HOH A 242 642 106 HOH HOH . F 5 HOH A 243 643 24 HOH HOH . F 5 HOH A 244 644 115 HOH HOH . F 5 HOH A 245 645 194 HOH HOH . F 5 HOH A 246 646 33 HOH HOH . F 5 HOH A 247 647 116 HOH HOH . F 5 HOH A 248 648 113 HOH HOH . F 5 HOH A 249 649 240 HOH HOH . F 5 HOH A 250 650 108 HOH HOH . F 5 HOH A 251 651 28 HOH HOH . F 5 HOH A 252 652 178 HOH HOH . F 5 HOH A 253 653 232 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 45.681 -8.542 1.643 1 15.51 ? C1 EDO 302 A 1 HETATM 2 O O1 EDO . . . C 3 45.841 -8.436 3.001 1 14.6 ? O1 EDO 302 A 1 HETATM 3 C C2 EDO . . . C 3 46.974 -8.799 1.048 1 17.07 ? C2 EDO 302 A 1 HETATM 4 O O2 EDO . . . C 3 47.719 -7.707 0.656 1 19.05 ? O2 EDO 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 449 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #