data_8PNX
#
_model_server_result.job_id            V7PQvzsGsudDerU7I7scUg 
_model_server_result.datetime_utc      '2024-11-28 03:03:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pnx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    8PNX 
#
_exptl.entry_id    8PNX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8PNX 
_cell.length_a            105.437 
_cell.length_b            105.437 
_cell.length_c            51.144 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PNX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -17.048 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D NA NA . A NA 303 1_555 F O HOH . A HOH 402 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? 
metalc ? metalc2 D NA NA . A NA 303 1_555 F O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? 
metalc ? metalc3 D NA NA . A NA 303 1_555 F O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? 
metalc ? metalc4 D NA NA . A NA 303 1_555 F O HOH . A HOH 547 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? 
metalc ? metalc5 E NA NA . A NA 304 1_555 F O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.036 ? 
metalc ? metalc6 E NA NA . A NA 304 1_555 F O HOH . A HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? 
metalc ? metalc7 E NA NA . A NA 304 1_555 F O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8PNX 
_atom_sites.fract_transf_matrix[1][1]    0.009484 
_atom_sites.fract_transf_matrix[1][2]    0.005476 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010952 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019553 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PMP A 1 301 302 PMP PMP . 
C 3 EDO A 1 302 303 EDO EDO . 
D 4 NA A 1 303 1 NA NA . 
E 4 NA A 1 304 2 NA NA . 
F 5 HOH A 1 401 43 HOH HOH . 
F 5 HOH A 2 402 206 HOH HOH . 
F 5 HOH A 3 403 251 HOH HOH . 
F 5 HOH A 4 404 23 HOH HOH . 
F 5 HOH A 5 405 94 HOH HOH . 
F 5 HOH A 6 406 247 HOH HOH . 
F 5 HOH A 7 407 248 HOH HOH . 
F 5 HOH A 8 408 55 HOH HOH . 
F 5 HOH A 9 409 153 HOH HOH . 
F 5 HOH A 10 410 171 HOH HOH . 
F 5 HOH A 11 411 13 HOH HOH . 
F 5 HOH A 12 412 228 HOH HOH . 
F 5 HOH A 13 413 105 HOH HOH . 
F 5 HOH A 14 414 231 HOH HOH . 
F 5 HOH A 15 415 49 HOH HOH . 
F 5 HOH A 16 416 155 HOH HOH . 
F 5 HOH A 17 417 207 HOH HOH . 
F 5 HOH A 18 418 102 HOH HOH . 
F 5 HOH A 19 419 234 HOH HOH . 
F 5 HOH A 20 420 47 HOH HOH . 
F 5 HOH A 21 421 170 HOH HOH . 
F 5 HOH A 22 422 176 HOH HOH . 
F 5 HOH A 23 423 182 HOH HOH . 
F 5 HOH A 24 424 132 HOH HOH . 
F 5 HOH A 25 425 29 HOH HOH . 
F 5 HOH A 26 426 3 HOH HOH . 
F 5 HOH A 27 427 148 HOH HOH . 
F 5 HOH A 28 428 253 HOH HOH . 
F 5 HOH A 29 429 201 HOH HOH . 
F 5 HOH A 30 430 258 HOH HOH . 
F 5 HOH A 31 431 10 HOH HOH . 
F 5 HOH A 32 432 44 HOH HOH . 
F 5 HOH A 33 433 100 HOH HOH . 
F 5 HOH A 34 434 52 HOH HOH . 
F 5 HOH A 35 435 61 HOH HOH . 
F 5 HOH A 36 436 250 HOH HOH . 
F 5 HOH A 37 437 145 HOH HOH . 
F 5 HOH A 38 438 104 HOH HOH . 
F 5 HOH A 39 439 36 HOH HOH . 
F 5 HOH A 40 440 128 HOH HOH . 
F 5 HOH A 41 441 199 HOH HOH . 
F 5 HOH A 42 442 133 HOH HOH . 
F 5 HOH A 43 443 263 HOH HOH . 
F 5 HOH A 44 444 18 HOH HOH . 
F 5 HOH A 45 445 236 HOH HOH . 
F 5 HOH A 46 446 241 HOH HOH . 
F 5 HOH A 47 447 205 HOH HOH . 
F 5 HOH A 48 448 93 HOH HOH . 
F 5 HOH A 49 449 252 HOH HOH . 
F 5 HOH A 50 450 57 HOH HOH . 
F 5 HOH A 51 451 84 HOH HOH . 
F 5 HOH A 52 452 124 HOH HOH . 
F 5 HOH A 53 453 188 HOH HOH . 
F 5 HOH A 54 454 9 HOH HOH . 
F 5 HOH A 55 455 7 HOH HOH . 
F 5 HOH A 56 456 235 HOH HOH . 
F 5 HOH A 57 457 160 HOH HOH . 
F 5 HOH A 58 458 229 HOH HOH . 
F 5 HOH A 59 459 78 HOH HOH . 
F 5 HOH A 60 460 95 HOH HOH . 
F 5 HOH A 61 461 173 HOH HOH . 
F 5 HOH A 62 462 21 HOH HOH . 
F 5 HOH A 63 463 32 HOH HOH . 
F 5 HOH A 64 464 129 HOH HOH . 
F 5 HOH A 65 465 172 HOH HOH . 
F 5 HOH A 66 466 214 HOH HOH . 
F 5 HOH A 67 467 31 HOH HOH . 
F 5 HOH A 68 468 175 HOH HOH . 
F 5 HOH A 69 469 227 HOH HOH . 
F 5 HOH A 70 470 65 HOH HOH . 
F 5 HOH A 71 471 15 HOH HOH . 
F 5 HOH A 72 472 62 HOH HOH . 
F 5 HOH A 73 473 75 HOH HOH . 
F 5 HOH A 74 474 254 HOH HOH . 
F 5 HOH A 75 475 19 HOH HOH . 
F 5 HOH A 76 476 2 HOH HOH . 
F 5 HOH A 77 477 118 HOH HOH . 
F 5 HOH A 78 478 120 HOH HOH . 
F 5 HOH A 79 479 51 HOH HOH . 
F 5 HOH A 80 480 149 HOH HOH . 
F 5 HOH A 81 481 16 HOH HOH . 
F 5 HOH A 82 482 189 HOH HOH . 
F 5 HOH A 83 483 137 HOH HOH . 
F 5 HOH A 84 484 121 HOH HOH . 
F 5 HOH A 85 485 246 HOH HOH . 
F 5 HOH A 86 486 5 HOH HOH . 
F 5 HOH A 87 487 92 HOH HOH . 
F 5 HOH A 88 488 187 HOH HOH . 
F 5 HOH A 89 489 4 HOH HOH . 
F 5 HOH A 90 490 86 HOH HOH . 
F 5 HOH A 91 491 74 HOH HOH . 
F 5 HOH A 92 492 50 HOH HOH . 
F 5 HOH A 93 493 38 HOH HOH . 
F 5 HOH A 94 494 87 HOH HOH . 
F 5 HOH A 95 495 45 HOH HOH . 
F 5 HOH A 96 496 26 HOH HOH . 
F 5 HOH A 97 497 221 HOH HOH . 
F 5 HOH A 98 498 79 HOH HOH . 
F 5 HOH A 99 499 6 HOH HOH . 
F 5 HOH A 100 500 216 HOH HOH . 
F 5 HOH A 101 501 96 HOH HOH . 
F 5 HOH A 102 502 82 HOH HOH . 
F 5 HOH A 103 503 154 HOH HOH . 
F 5 HOH A 104 504 72 HOH HOH . 
F 5 HOH A 105 505 123 HOH HOH . 
F 5 HOH A 106 506 69 HOH HOH . 
F 5 HOH A 107 507 259 HOH HOH . 
F 5 HOH A 108 508 80 HOH HOH . 
F 5 HOH A 109 509 192 HOH HOH . 
F 5 HOH A 110 510 58 HOH HOH . 
F 5 HOH A 111 511 204 HOH HOH . 
F 5 HOH A 112 512 238 HOH HOH . 
F 5 HOH A 113 513 196 HOH HOH . 
F 5 HOH A 114 514 166 HOH HOH . 
F 5 HOH A 115 515 144 HOH HOH . 
F 5 HOH A 116 516 110 HOH HOH . 
F 5 HOH A 117 517 197 HOH HOH . 
F 5 HOH A 118 518 40 HOH HOH . 
F 5 HOH A 119 519 243 HOH HOH . 
F 5 HOH A 120 520 186 HOH HOH . 
F 5 HOH A 121 521 20 HOH HOH . 
F 5 HOH A 122 522 222 HOH HOH . 
F 5 HOH A 123 523 136 HOH HOH . 
F 5 HOH A 124 524 85 HOH HOH . 
F 5 HOH A 125 525 17 HOH HOH . 
F 5 HOH A 126 526 76 HOH HOH . 
F 5 HOH A 127 527 25 HOH HOH . 
F 5 HOH A 128 528 88 HOH HOH . 
F 5 HOH A 129 529 184 HOH HOH . 
F 5 HOH A 130 530 101 HOH HOH . 
F 5 HOH A 131 531 224 HOH HOH . 
F 5 HOH A 132 532 66 HOH HOH . 
F 5 HOH A 133 533 191 HOH HOH . 
F 5 HOH A 134 534 59 HOH HOH . 
F 5 HOH A 135 535 159 HOH HOH . 
F 5 HOH A 136 536 181 HOH HOH . 
F 5 HOH A 137 537 220 HOH HOH . 
F 5 HOH A 138 538 127 HOH HOH . 
F 5 HOH A 139 539 210 HOH HOH . 
F 5 HOH A 140 540 67 HOH HOH . 
F 5 HOH A 141 541 143 HOH HOH . 
F 5 HOH A 142 542 130 HOH HOH . 
F 5 HOH A 143 543 125 HOH HOH . 
F 5 HOH A 144 544 41 HOH HOH . 
F 5 HOH A 145 545 89 HOH HOH . 
F 5 HOH A 146 546 73 HOH HOH . 
F 5 HOH A 147 547 179 HOH HOH . 
F 5 HOH A 148 548 107 HOH HOH . 
F 5 HOH A 149 549 98 HOH HOH . 
F 5 HOH A 150 550 71 HOH HOH . 
F 5 HOH A 151 551 42 HOH HOH . 
F 5 HOH A 152 552 103 HOH HOH . 
F 5 HOH A 153 553 77 HOH HOH . 
F 5 HOH A 154 554 223 HOH HOH . 
F 5 HOH A 155 555 30 HOH HOH . 
F 5 HOH A 156 556 135 HOH HOH . 
F 5 HOH A 157 557 152 HOH HOH . 
F 5 HOH A 158 558 260 HOH HOH . 
F 5 HOH A 159 559 54 HOH HOH . 
F 5 HOH A 160 560 27 HOH HOH . 
F 5 HOH A 161 561 233 HOH HOH . 
F 5 HOH A 162 562 99 HOH HOH . 
F 5 HOH A 163 563 226 HOH HOH . 
F 5 HOH A 164 564 165 HOH HOH . 
F 5 HOH A 165 565 185 HOH HOH . 
F 5 HOH A 166 566 157 HOH HOH . 
F 5 HOH A 167 567 63 HOH HOH . 
F 5 HOH A 168 568 218 HOH HOH . 
F 5 HOH A 169 569 39 HOH HOH . 
F 5 HOH A 170 570 83 HOH HOH . 
F 5 HOH A 171 571 174 HOH HOH . 
F 5 HOH A 172 572 134 HOH HOH . 
F 5 HOH A 173 573 48 HOH HOH . 
F 5 HOH A 174 574 177 HOH HOH . 
F 5 HOH A 175 575 68 HOH HOH . 
F 5 HOH A 176 576 64 HOH HOH . 
F 5 HOH A 177 577 215 HOH HOH . 
F 5 HOH A 178 578 156 HOH HOH . 
F 5 HOH A 179 579 162 HOH HOH . 
F 5 HOH A 180 580 97 HOH HOH . 
F 5 HOH A 181 581 117 HOH HOH . 
F 5 HOH A 182 582 111 HOH HOH . 
F 5 HOH A 183 583 198 HOH HOH . 
F 5 HOH A 184 584 139 HOH HOH . 
F 5 HOH A 185 585 91 HOH HOH . 
F 5 HOH A 186 586 180 HOH HOH . 
F 5 HOH A 187 587 219 HOH HOH . 
F 5 HOH A 188 588 225 HOH HOH . 
F 5 HOH A 189 589 244 HOH HOH . 
F 5 HOH A 190 590 217 HOH HOH . 
F 5 HOH A 191 591 11 HOH HOH . 
F 5 HOH A 192 592 131 HOH HOH . 
F 5 HOH A 193 593 168 HOH HOH . 
F 5 HOH A 194 594 119 HOH HOH . 
F 5 HOH A 195 595 208 HOH HOH . 
F 5 HOH A 196 596 14 HOH HOH . 
F 5 HOH A 197 597 257 HOH HOH . 
F 5 HOH A 198 598 56 HOH HOH . 
F 5 HOH A 199 599 169 HOH HOH . 
F 5 HOH A 200 600 90 HOH HOH . 
F 5 HOH A 201 601 161 HOH HOH . 
F 5 HOH A 202 602 12 HOH HOH . 
F 5 HOH A 203 603 249 HOH HOH . 
F 5 HOH A 204 604 212 HOH HOH . 
F 5 HOH A 205 605 164 HOH HOH . 
F 5 HOH A 206 606 81 HOH HOH . 
F 5 HOH A 207 607 151 HOH HOH . 
F 5 HOH A 208 608 70 HOH HOH . 
F 5 HOH A 209 609 242 HOH HOH . 
F 5 HOH A 210 610 46 HOH HOH . 
F 5 HOH A 211 611 126 HOH HOH . 
F 5 HOH A 212 612 34 HOH HOH . 
F 5 HOH A 213 613 195 HOH HOH . 
F 5 HOH A 214 614 112 HOH HOH . 
F 5 HOH A 215 615 146 HOH HOH . 
F 5 HOH A 216 616 211 HOH HOH . 
F 5 HOH A 217 617 138 HOH HOH . 
F 5 HOH A 218 618 141 HOH HOH . 
F 5 HOH A 219 619 53 HOH HOH . 
F 5 HOH A 220 620 209 HOH HOH . 
F 5 HOH A 221 621 22 HOH HOH . 
F 5 HOH A 222 622 37 HOH HOH . 
F 5 HOH A 223 623 35 HOH HOH . 
F 5 HOH A 224 624 190 HOH HOH . 
F 5 HOH A 225 625 147 HOH HOH . 
F 5 HOH A 226 626 142 HOH HOH . 
F 5 HOH A 227 627 203 HOH HOH . 
F 5 HOH A 228 628 265 HOH HOH . 
F 5 HOH A 229 629 60 HOH HOH . 
F 5 HOH A 230 630 122 HOH HOH . 
F 5 HOH A 231 631 158 HOH HOH . 
F 5 HOH A 232 632 262 HOH HOH . 
F 5 HOH A 233 633 140 HOH HOH . 
F 5 HOH A 234 634 109 HOH HOH . 
F 5 HOH A 235 635 237 HOH HOH . 
F 5 HOH A 236 636 114 HOH HOH . 
F 5 HOH A 237 637 245 HOH HOH . 
F 5 HOH A 238 638 163 HOH HOH . 
F 5 HOH A 239 639 264 HOH HOH . 
F 5 HOH A 240 640 200 HOH HOH . 
F 5 HOH A 241 641 213 HOH HOH . 
F 5 HOH A 242 642 106 HOH HOH . 
F 5 HOH A 243 643 24 HOH HOH . 
F 5 HOH A 244 644 115 HOH HOH . 
F 5 HOH A 245 645 194 HOH HOH . 
F 5 HOH A 246 646 33 HOH HOH . 
F 5 HOH A 247 647 116 HOH HOH . 
F 5 HOH A 248 648 113 HOH HOH . 
F 5 HOH A 249 649 240 HOH HOH . 
F 5 HOH A 250 650 108 HOH HOH . 
F 5 HOH A 251 651 28 HOH HOH . 
F 5 HOH A 252 652 178 HOH HOH . 
F 5 HOH A 253 653 232 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               48.524 
_atom_site.Cartn_y               -21.475 
_atom_site.Cartn_z               12.916 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        6.71 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           303 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#