data_8PON # _model_server_result.job_id H0WzABNXEXIqFsR0Oh6xUw _model_server_result.datetime_utc '2025-06-29 06:29:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pon # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 8PON # _exptl.entry_id 8PON _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.57 _cell.angle_gamma 90 _cell.entry_id 8PON _cell.length_a 80.117 _cell.length_b 61.591 _cell.length_c 111.292 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PON _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 165 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 380 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id MYR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id MYR _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.778 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 237 n n C1 O2 MYR sing 238 n n C1 C2 MYR sing 239 n n O2 HO2 MYR sing 240 n n C2 C3 MYR sing 241 n n C2 H21 MYR sing 242 n n C2 H22 MYR sing 243 n n C3 C4 MYR sing 244 n n C3 H31 MYR sing 245 n n C3 H32 MYR sing 246 n n C4 C5 MYR sing 247 n n C4 H41 MYR sing 248 n n C4 H42 MYR sing 249 n n C5 C6 MYR sing 250 n n C5 H51 MYR sing 251 n n C5 H52 MYR sing 252 n n C6 C7 MYR sing 253 n n C6 H61 MYR sing 254 n n C6 H62 MYR sing 255 n n C7 C8 MYR sing 256 n n C7 H71 MYR sing 257 n n C7 H72 MYR sing 258 n n C8 C9 MYR sing 259 n n C8 H81 MYR sing 260 n n C8 H82 MYR sing 261 n n C9 C10 MYR sing 262 n n C9 H91 MYR sing 263 n n C9 H92 MYR sing 264 n n C10 C11 MYR sing 265 n n C10 H101 MYR sing 266 n n C10 H102 MYR sing 267 n n C11 C12 MYR sing 268 n n C11 H111 MYR sing 269 n n C11 H112 MYR sing 270 n n C12 C13 MYR sing 271 n n C12 H121 MYR sing 272 n n C12 H122 MYR sing 273 n n C13 C14 MYR sing 274 n n C13 H131 MYR sing 275 n n C13 H132 MYR sing 276 n n C14 H141 MYR sing 277 n n C14 H142 MYR sing 278 n n C14 H143 MYR sing 279 n n # _atom_sites.entry_id 8PON _atom_sites.fract_transf_matrix[1][1] 0.012482 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002783 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016236 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MYR B 1 501 1 MYR MYR . D 3 ZUT A 1 501 1 ZUT LIG . E 4 HOH B 1 601 5 HOH HOH . E 4 HOH B 2 602 1 HOH HOH . E 4 HOH B 3 603 4 HOH HOH . E 4 HOH B 4 604 16 HOH HOH . E 4 HOH B 5 605 10 HOH HOH . E 4 HOH B 6 606 6 HOH HOH . E 4 HOH B 7 607 13 HOH HOH . E 4 HOH B 8 608 8 HOH HOH . E 4 HOH B 9 609 2 HOH HOH . E 4 HOH B 10 610 3 HOH HOH . E 4 HOH B 11 611 7 HOH HOH . F 4 HOH A 1 601 11 HOH HOH . F 4 HOH A 2 602 12 HOH HOH . F 4 HOH A 3 603 9 HOH HOH . F 4 HOH A 4 604 14 HOH HOH . F 4 HOH A 5 605 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . C 2 -3.889 -6.261 27.253 1 66.01 ? C1 MYR 501 B 1 HETATM 2 O O1 MYR . . . C 2 -5.055 -6.711 27.018 1 62.02 ? O1 MYR 501 B 1 HETATM 3 C C2 MYR . . . C 2 -3.523 -5.868 28.691 1 62.12 ? C2 MYR 501 B 1 HETATM 4 C C3 MYR . . . C 2 -3.76 -6.92 29.799 1 57.21 ? C3 MYR 501 B 1 HETATM 5 C C4 MYR . . . C 2 -4.463 -8.212 29.372 1 56.2 ? C4 MYR 501 B 1 HETATM 6 C C5 MYR . . . C 2 -4.571 -9.188 30.539 1 54.27 ? C5 MYR 501 B 1 HETATM 7 C C6 MYR . . . C 2 -5.01 -10.571 30.082 1 48.89 ? C6 MYR 501 B 1 HETATM 8 C C7 MYR . . . C 2 -3.916 -11.611 30.227 1 47.39 ? C7 MYR 501 B 1 HETATM 9 C C8 MYR . . . C 2 -4.452 -13.02 30.052 1 47.3 ? C8 MYR 501 B 1 HETATM 10 C C9 MYR . . . C 2 -3.372 -14.039 29.686 1 46.71 ? C9 MYR 501 B 1 HETATM 11 C C10 MYR . . . C 2 -2.977 -13.9 28.22 1 48.52 ? C10 MYR 501 B 1 HETATM 12 C C11 MYR . . . C 2 -2.337 -15.177 27.68 1 51.3 ? C11 MYR 501 B 1 HETATM 13 C C12 MYR . . . C 2 -0.843 -15.255 27.975 1 48.91 ? C12 MYR 501 B 1 HETATM 14 C C13 MYR . . . C 2 -0.237 -16.543 27.414 1 51.49 ? C13 MYR 501 B 1 HETATM 15 C C14 MYR . . . C 2 1.301 -16.486 27.525 1 50.83 ? C14 MYR 501 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #