data_8PPS # _model_server_result.job_id M_cB4fvUcCiW6e6gKDUevA _model_server_result.datetime_utc '2024-10-11 01:26:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pps # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 8PPS # _exptl.entry_id 8PPS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PPS _cell.length_a 64.4 _cell.length_b 65.72 _cell.length_c 172.25 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PPS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 57 A GLU 585 1_555 I MG MG . A MG 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc2 A OD1 ASN 118 A ASN 646 1_555 I MG MG . A MG 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc3 A OE1 GLU 150 A GLU 678 1_555 I MG MG . A MG 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc4 A OD2 ASP 180 A ASP 708 1_555 I MG MG . A MG 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc5 I MG MG . A MG 807 1_555 O O HOH . A HOH 934 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? metalc ? metalc6 I MG MG . A MG 807 1_555 O O HOH . A HOH 971 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc7 B OE2 GLU 57 B GLU 585 1_555 N MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc8 B OD1 ASN 118 B ASN 646 1_555 N MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc9 B OE1 GLU 150 B GLU 678 1_555 N MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc10 B OD2 ASP 180 B ASP 708 1_555 N MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc11 N MG MG . B MG 805 1_555 P O HOH . B HOH 933 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc12 N MG MG . B MG 805 1_555 P O HOH . B HOH 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 147 n n C1 C2 GOL sing 148 n n C1 H11 GOL sing 149 n n C1 H12 GOL sing 150 n n O1 HO1 GOL sing 151 n n C2 O2 GOL sing 152 n n C2 C3 GOL sing 153 n n C2 H2 GOL sing 154 n n O2 HO2 GOL sing 155 n n C3 O3 GOL sing 156 n n C3 H31 GOL sing 157 n n C3 H32 GOL sing 158 n n O3 HO3 GOL sing 159 n n # _atom_sites.entry_id 8PPS _atom_sites.fract_transf_matrix[1][1] 0.015528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015216 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 801 801 GOL GOL . D 2 GOL A 1 802 802 GOL GOL . E 2 GOL A 1 803 803 GOL GOL . F 3 EDO A 1 804 1302 EDO EDO . G 3 EDO A 1 805 1303 EDO EDO . H 4 BME A 1 806 1304 BME BME . I 5 MG A 1 807 401 MG MG . J 2 GOL B 1 801 801 GOL GOL . K 4 BME B 1 802 802 BME BME . L 3 EDO B 1 803 803 EDO EDO . M 3 EDO B 1 804 804 EDO EDO . N 5 MG B 1 805 301 MG MG . O 6 HOH A 1 901 138 HOH HOH . O 6 HOH A 2 902 116 HOH HOH . O 6 HOH A 3 903 300 HOH HOH . O 6 HOH A 4 904 261 HOH HOH . O 6 HOH A 5 905 112 HOH HOH . O 6 HOH A 6 906 137 HOH HOH . O 6 HOH A 7 907 144 HOH HOH . O 6 HOH A 8 908 269 HOH HOH . O 6 HOH A 9 909 165 HOH HOH . O 6 HOH A 10 910 232 HOH HOH . O 6 HOH A 11 911 120 HOH HOH . O 6 HOH A 12 912 170 HOH HOH . O 6 HOH A 13 913 306 HOH HOH . O 6 HOH A 14 914 28 HOH HOH . O 6 HOH A 15 915 6 HOH HOH . O 6 HOH A 16 916 231 HOH HOH . O 6 HOH A 17 917 62 HOH HOH . O 6 HOH A 18 918 37 HOH HOH . O 6 HOH A 19 919 234 HOH HOH . O 6 HOH A 20 920 53 HOH HOH . O 6 HOH A 21 921 122 HOH HOH . O 6 HOH A 22 922 156 HOH HOH . O 6 HOH A 23 923 7 HOH HOH . O 6 HOH A 24 924 293 HOH HOH . O 6 HOH A 25 925 161 HOH HOH . O 6 HOH A 26 926 237 HOH HOH . O 6 HOH A 27 927 168 HOH HOH . O 6 HOH A 28 928 272 HOH HOH . O 6 HOH A 29 929 151 HOH HOH . O 6 HOH A 30 930 23 HOH HOH . O 6 HOH A 31 931 146 HOH HOH . O 6 HOH A 32 932 230 HOH HOH . O 6 HOH A 33 933 52 HOH HOH . O 6 HOH A 34 934 133 HOH HOH . O 6 HOH A 35 935 158 HOH HOH . O 6 HOH A 36 936 229 HOH HOH . O 6 HOH A 37 937 29 HOH HOH . O 6 HOH A 38 938 303 HOH HOH . O 6 HOH A 39 939 292 HOH HOH . O 6 HOH A 40 940 22 HOH HOH . O 6 HOH A 41 941 131 HOH HOH . O 6 HOH A 42 942 132 HOH HOH . O 6 HOH A 43 943 58 HOH HOH . O 6 HOH A 44 944 128 HOH HOH . O 6 HOH A 45 945 287 HOH HOH . O 6 HOH A 46 946 25 HOH HOH . O 6 HOH A 47 947 134 HOH HOH . O 6 HOH A 48 948 42 HOH HOH . O 6 HOH A 49 949 114 HOH HOH . O 6 HOH A 50 950 40 HOH HOH . O 6 HOH A 51 951 10 HOH HOH . O 6 HOH A 52 952 19 HOH HOH . O 6 HOH A 53 953 136 HOH HOH . O 6 HOH A 54 954 13 HOH HOH . O 6 HOH A 55 955 61 HOH HOH . O 6 HOH A 56 956 142 HOH HOH . O 6 HOH A 57 957 294 HOH HOH . O 6 HOH A 58 958 148 HOH HOH . O 6 HOH A 59 959 295 HOH HOH . O 6 HOH A 60 960 5 HOH HOH . O 6 HOH A 61 961 159 HOH HOH . O 6 HOH A 62 962 57 HOH HOH . O 6 HOH A 63 963 289 HOH HOH . O 6 HOH A 64 964 149 HOH HOH . O 6 HOH A 65 965 24 HOH HOH . O 6 HOH A 66 966 147 HOH HOH . O 6 HOH A 67 967 167 HOH HOH . O 6 HOH A 68 968 115 HOH HOH . O 6 HOH A 69 969 30 HOH HOH . O 6 HOH A 70 970 157 HOH HOH . O 6 HOH A 71 971 98 HOH HOH . O 6 HOH A 72 972 152 HOH HOH . O 6 HOH A 73 973 12 HOH HOH . O 6 HOH A 74 974 113 HOH HOH . O 6 HOH A 75 975 129 HOH HOH . O 6 HOH A 76 976 117 HOH HOH . O 6 HOH A 77 977 107 HOH HOH . O 6 HOH A 78 978 245 HOH HOH . O 6 HOH A 79 979 275 HOH HOH . O 6 HOH A 80 980 145 HOH HOH . O 6 HOH A 81 981 304 HOH HOH . O 6 HOH A 82 982 46 HOH HOH . O 6 HOH A 83 983 290 HOH HOH . O 6 HOH A 84 984 308 HOH HOH . O 6 HOH A 85 985 298 HOH HOH . O 6 HOH A 86 986 100 HOH HOH . O 6 HOH A 87 987 164 HOH HOH . O 6 HOH A 88 988 233 HOH HOH . O 6 HOH A 89 989 271 HOH HOH . O 6 HOH A 90 990 278 HOH HOH . O 6 HOH A 91 991 124 HOH HOH . O 6 HOH A 92 992 67 HOH HOH . O 6 HOH A 93 993 276 HOH HOH . O 6 HOH A 94 994 14 HOH HOH . O 6 HOH A 95 995 244 HOH HOH . O 6 HOH A 96 996 246 HOH HOH . O 6 HOH A 97 997 51 HOH HOH . O 6 HOH A 98 998 111 HOH HOH . O 6 HOH A 99 999 160 HOH HOH . O 6 HOH A 100 1000 155 HOH HOH . O 6 HOH A 101 1001 143 HOH HOH . O 6 HOH A 102 1002 262 HOH HOH . O 6 HOH A 103 1003 209 HOH HOH . O 6 HOH A 104 1004 274 HOH HOH . P 6 HOH B 1 901 204 HOH HOH . P 6 HOH B 2 902 268 HOH HOH . P 6 HOH B 3 903 249 HOH HOH . P 6 HOH B 4 904 194 HOH HOH . P 6 HOH B 5 905 20 HOH HOH . P 6 HOH B 6 906 307 HOH HOH . P 6 HOH B 7 907 18 HOH HOH . P 6 HOH B 8 908 106 HOH HOH . P 6 HOH B 9 909 265 HOH HOH . P 6 HOH B 10 910 192 HOH HOH . P 6 HOH B 11 911 212 HOH HOH . P 6 HOH B 12 912 258 HOH HOH . P 6 HOH B 13 913 179 HOH HOH . P 6 HOH B 14 914 270 HOH HOH . P 6 HOH B 15 915 76 HOH HOH . P 6 HOH B 16 916 70 HOH HOH . P 6 HOH B 17 917 216 HOH HOH . P 6 HOH B 18 918 277 HOH HOH . P 6 HOH B 19 919 255 HOH HOH . P 6 HOH B 20 920 183 HOH HOH . P 6 HOH B 21 921 89 HOH HOH . P 6 HOH B 22 922 92 HOH HOH . P 6 HOH B 23 923 222 HOH HOH . P 6 HOH B 24 924 74 HOH HOH . P 6 HOH B 25 925 260 HOH HOH . P 6 HOH B 26 926 190 HOH HOH . P 6 HOH B 27 927 102 HOH HOH . P 6 HOH B 28 928 309 HOH HOH . P 6 HOH B 29 929 186 HOH HOH . P 6 HOH B 30 930 185 HOH HOH . P 6 HOH B 31 931 177 HOH HOH . P 6 HOH B 32 932 176 HOH HOH . P 6 HOH B 33 933 171 HOH HOH . P 6 HOH B 34 934 228 HOH HOH . P 6 HOH B 35 935 75 HOH HOH . P 6 HOH B 36 936 311 HOH HOH . P 6 HOH B 37 937 202 HOH HOH . P 6 HOH B 38 938 4 HOH HOH . P 6 HOH B 39 939 215 HOH HOH . P 6 HOH B 40 940 220 HOH HOH . P 6 HOH B 41 941 72 HOH HOH . P 6 HOH B 42 942 206 HOH HOH . P 6 HOH B 43 943 252 HOH HOH . P 6 HOH B 44 944 95 HOH HOH . P 6 HOH B 45 945 266 HOH HOH . P 6 HOH B 46 946 172 HOH HOH . P 6 HOH B 47 947 310 HOH HOH . P 6 HOH B 48 948 79 HOH HOH . P 6 HOH B 49 949 193 HOH HOH . P 6 HOH B 50 950 224 HOH HOH . P 6 HOH B 51 951 264 HOH HOH . P 6 HOH B 52 952 96 HOH HOH . P 6 HOH B 53 953 218 HOH HOH . P 6 HOH B 54 954 127 HOH HOH . P 6 HOH B 55 955 97 HOH HOH . P 6 HOH B 56 956 184 HOH HOH . P 6 HOH B 57 957 182 HOH HOH . P 6 HOH B 58 958 210 HOH HOH . P 6 HOH B 59 959 71 HOH HOH . P 6 HOH B 60 960 203 HOH HOH . P 6 HOH B 61 961 103 HOH HOH . P 6 HOH B 62 962 189 HOH HOH . P 6 HOH B 63 963 198 HOH HOH . P 6 HOH B 64 964 17 HOH HOH . P 6 HOH B 65 965 78 HOH HOH . P 6 HOH B 66 966 196 HOH HOH . P 6 HOH B 67 967 197 HOH HOH . P 6 HOH B 68 968 207 HOH HOH . P 6 HOH B 69 969 267 HOH HOH . P 6 HOH B 70 970 90 HOH HOH . P 6 HOH B 71 971 301 HOH HOH . P 6 HOH B 72 972 187 HOH HOH . P 6 HOH B 73 973 205 HOH HOH . P 6 HOH B 74 974 91 HOH HOH . P 6 HOH B 75 975 87 HOH HOH . P 6 HOH B 76 976 105 HOH HOH . P 6 HOH B 77 977 56 HOH HOH . P 6 HOH B 78 978 257 HOH HOH . P 6 HOH B 79 979 226 HOH HOH . P 6 HOH B 80 980 217 HOH HOH . P 6 HOH B 81 981 201 HOH HOH . P 6 HOH B 82 982 299 HOH HOH . P 6 HOH B 83 983 195 HOH HOH . P 6 HOH B 84 984 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 3.514 -39.098 -10.675 1 69.16 0 C1 GOL 802 A 1 HETATM 2 O O1 GOL . . . D 2 2.576 -38.401 -11.496 1 54.82 0 O1 GOL 802 A 1 HETATM 3 C C2 GOL . . . D 2 3.175 -40.562 -10.4 1 83.55 0 C2 GOL 802 A 1 HETATM 4 O O2 GOL . . . D 2 3.421 -40.899 -9.025 1 71.68 0 O2 GOL 802 A 1 HETATM 5 C C3 GOL . . . D 2 1.769 -40.971 -10.799 1 83.63 0 C3 GOL 802 A 1 HETATM 6 O O3 GOL . . . D 2 1.812 -41.808 -11.959 1 67.88 0 O3 GOL 802 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #