data_8PQG # _model_server_result.job_id qDa5iO3s_BWT7PatKuGDUA _model_server_result.datetime_utc '2024-11-15 16:56:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pqg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 8PQG # _exptl.entry_id 8PQG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 498.558 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Avapritinib _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PQG _cell.length_a 58.75 _cell.length_b 59.09 _cell.length_c 192.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PQG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C26 H27 F N10' _chem_comp.formula_weight 498.558 _chem_comp.id 9JI _chem_comp.mon_nstd_flag . _chem_comp.name Avapritinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (1~{S})-1-(4-fluorophenyl)-1-[2-[4-[6-(1-methylpyrazol-4-yl)pyrrolo[2,1-f][1,2,4]triazin-4-yl]piperazin-1-yl]pyrimidin-5-yl]ethanamine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 N4 9JI sing 1 n n C21 C22 9JI sing 2 n n N1 C1 9JI doub 3 n y N1 N 9JI sing 4 n y N4 C8 9JI sing 5 n n N4 C9 9JI sing 6 n n C1 C2 9JI sing 7 n y C8 C7 9JI sing 8 n n C N 9JI sing 9 n n N C25 9JI sing 10 n y N5 C9 9JI doub 11 n y N5 C10 9JI sing 12 n y C22 N3 9JI sing 13 n n N3 C6 9JI sing 14 n n N3 C7 9JI sing 15 n n C2 C25 9JI doub 16 n y C2 C3 9JI sing 17 n n C24 C3 9JI sing 18 n y C24 C5 9JI doub 19 n y C9 N7 9JI sing 20 n y C3 C4 9JI doub 21 n y C5 C6 9JI sing 22 n y C5 N2 9JI sing 23 n y C6 N8 9JI doub 24 n y C10 C11 9JI doub 25 n y N6 C12 9JI sing 26 n n C4 N2 9JI sing 27 n y N2 N9 9JI sing 28 n y N7 C20 9JI doub 29 n y N8 C23 9JI sing 30 n y C23 N9 9JI doub 31 n y C11 C20 9JI sing 32 n y C11 C12 9JI sing 33 n n C12 C13 9JI sing 34 n n C12 C14 9JI sing 35 n n C14 C19 9JI doub 36 n y C14 C15 9JI sing 37 n y C19 C18 9JI sing 38 n y C15 C16 9JI doub 39 n y C18 C17 9JI doub 40 n y C17 C16 9JI sing 41 n y C17 F 9JI sing 42 n n C1 H1 9JI sing 43 n n C4 H2 9JI sing 44 n n C H3 9JI sing 45 n n C H4 9JI sing 46 n n C H5 9JI sing 47 n n C10 H6 9JI sing 48 n n C7 H7 9JI sing 49 n n C7 H8 9JI sing 50 n n C8 H9 9JI sing 51 n n C8 H10 9JI sing 52 n n C13 H11 9JI sing 53 n n C13 H12 9JI sing 54 n n C13 H13 9JI sing 55 n n C15 H14 9JI sing 56 n n C16 H15 9JI sing 57 n n C18 H16 9JI sing 58 n n C19 H17 9JI sing 59 n n C20 H18 9JI sing 60 n n C21 H19 9JI sing 61 n n C21 H20 9JI sing 62 n n C22 H21 9JI sing 63 n n C22 H22 9JI sing 64 n n C23 H23 9JI sing 65 n n C24 H24 9JI sing 66 n n C25 H25 9JI sing 67 n n N6 H26 9JI sing 68 n n N6 H27 9JI sing 69 n n # _atom_sites.entry_id 8PQG _atom_sites.fract_transf_matrix[1][1] 0.017021 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 9JI A 1 1001 1001 9JI AVA . D 2 9JI C 1 1001 1001 9JI AVA . E 3 HOH A 1 1101 29 HOH HOH . E 3 HOH A 2 1102 2 HOH HOH . E 3 HOH A 3 1103 10 HOH HOH . E 3 HOH A 4 1104 14 HOH HOH . E 3 HOH A 5 1105 30 HOH HOH . E 3 HOH A 6 1106 1 HOH HOH . E 3 HOH A 7 1107 4 HOH HOH . E 3 HOH A 8 1108 27 HOH HOH . E 3 HOH A 9 1109 28 HOH HOH . E 3 HOH A 10 1110 12 HOH HOH . E 3 HOH A 11 1111 18 HOH HOH . E 3 HOH A 12 1112 20 HOH HOH . E 3 HOH A 13 1113 25 HOH HOH . E 3 HOH A 14 1114 46 HOH HOH . E 3 HOH A 15 1115 19 HOH HOH . E 3 HOH A 16 1116 16 HOH HOH . E 3 HOH A 17 1117 11 HOH HOH . E 3 HOH A 18 1118 7 HOH HOH . E 3 HOH A 19 1119 6 HOH HOH . E 3 HOH A 20 1120 3 HOH HOH . E 3 HOH A 21 1121 45 HOH HOH . E 3 HOH A 22 1122 47 HOH HOH . E 3 HOH A 23 1123 26 HOH HOH . F 3 HOH C 1 1101 42 HOH HOH . F 3 HOH C 2 1102 40 HOH HOH . F 3 HOH C 3 1103 36 HOH HOH . F 3 HOH C 4 1104 34 HOH HOH . F 3 HOH C 5 1105 23 HOH HOH . F 3 HOH C 6 1106 31 HOH HOH . F 3 HOH C 7 1107 38 HOH HOH . F 3 HOH C 8 1108 21 HOH HOH . F 3 HOH C 9 1109 44 HOH HOH . F 3 HOH C 10 1110 35 HOH HOH . F 3 HOH C 11 1111 41 HOH HOH . F 3 HOH C 12 1112 24 HOH HOH . F 3 HOH C 13 1113 37 HOH HOH . F 3 HOH C 14 1114 22 HOH HOH . F 3 HOH C 15 1115 32 HOH HOH . F 3 HOH C 16 1116 43 HOH HOH . F 3 HOH C 17 1117 17 HOH HOH . F 3 HOH C 18 1118 39 HOH HOH . F 3 HOH C 19 1119 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9JI . . . C 2 -26.501 -28.252 55.123 1 72.01 ? C1 9JI 1001 A 1 HETATM 2 C C2 9JI . . . C 2 -26.213 -26.921 55.459 1 69.25 ? C2 9JI 1001 A 1 HETATM 3 C C3 9JI . . . C 2 -24.881 -26.3 55.65 1 67.61 ? C3 9JI 1001 A 1 HETATM 4 C C4 9JI . . . C 2 -24.668 -24.981 56.014 1 67.33 ? C4 9JI 1001 A 1 HETATM 5 C C5 9JI . . . C 2 -22.628 -25.946 55.75 1 65.38 ? C5 9JI 1001 A 1 HETATM 6 C C6 9JI . . . C 2 -21.191 -25.9 55.765 1 65.83 ? C6 9JI 1001 A 1 HETATM 7 N N 9JI . . . C 2 -28.369 -27.265 55.271 1 72.01 ? N 9JI 1001 A 1 HETATM 8 C C 9JI . . . C 2 -29.819 -27.118 55.233 1 66.98 ? C 9JI 1001 A 1 HETATM 9 C C10 9JI . . . C 2 -15.356 -30.333 55.889 1 60.58 ? C10 9JI 1001 A 1 HETATM 10 C C11 9JI . . . C 2 -15.677 -31.544 56.476 1 63.05 ? C11 9JI 1001 A 1 HETATM 11 C C7 9JI . . . C 2 -20.629 -28.273 55.961 1 65.31 ? C7 9JI 1001 A 1 HETATM 12 C C8 9JI . . . C 2 -19.915 -29.315 55.13 1 62.87 ? C8 9JI 1001 A 1 HETATM 13 C C9 9JI . . . C 2 -17.543 -29.865 55.546 1 61.39 ? C9 9JI 1001 A 1 HETATM 14 C C12 9JI . . . C 2 -14.598 -32.506 56.983 1 63.91 ? C12 9JI 1001 A 1 HETATM 15 C C13 9JI . . . C 2 -15.225 -33.848 57.363 1 67.06 ? C13 9JI 1001 A 1 HETATM 16 C C14 9JI . . . C 2 -13.834 -31.92 58.175 1 62.63 ? C14 9JI 1001 A 1 HETATM 17 C C15 9JI . . . C 2 -14.519 -31.388 59.261 1 62.17 ? C15 9JI 1001 A 1 HETATM 18 C C16 9JI . . . C 2 -13.842 -30.844 60.338 1 64.23 ? C16 9JI 1001 A 1 HETATM 19 C C17 9JI . . . C 2 -12.474 -30.84 60.307 1 66.41 ? C17 9JI 1001 A 1 HETATM 20 C C18 9JI . . . C 2 -11.753 -31.364 59.268 1 62.94 ? C18 9JI 1001 A 1 HETATM 21 C C19 9JI . . . C 2 -12.443 -31.904 58.198 1 61.46 ? C19 9JI 1001 A 1 HETATM 22 C C20 9JI . . . C 2 -17.029 -31.825 56.553 1 61.73 ? C20 9JI 1001 A 1 HETATM 23 C C21 9JI . . . C 2 -18.178 -27.674 54.59 1 59.68 ? C21 9JI 1001 A 1 HETATM 24 C C22 9JI . . . C 2 -18.913 -26.64 55.418 1 63.15 ? C22 9JI 1001 A 1 HETATM 25 C C23 9JI . . . C 2 -21.356 -23.721 56.396 1 63.72 ? C23 9JI 1001 A 1 HETATM 26 C C24 9JI . . . C 2 -23.583 -26.908 55.481 1 65.85 ? C24 9JI 1001 A 1 HETATM 27 C C25 9JI . . . C 2 -27.456 -26.319 55.543 1 72.36 ? C25 9JI 1001 A 1 HETATM 28 F F 9JI . . . C 2 -11.803 -30.256 61.336 1 67.96 ? F 9JI 1001 A 1 HETATM 29 N N1 9JI . . . C 2 -27.802 -28.468 55.011 1 75.54 ? N1 9JI 1001 A 1 HETATM 30 N N2 9JI . . . C 2 -23.322 -24.799 56.072 1 66.38 ? N2 9JI 1001 A 1 HETATM 31 N N3 9JI . . . C 2 -20.35 -26.932 55.44 1 64.66 ? N3 9JI 1001 A 1 HETATM 32 N N4 9JI . . . C 2 -18.482 -29.025 55.064 1 63.04 ? N4 9JI 1001 A 1 HETATM 33 N N5 9JI . . . C 2 -16.269 -29.48 55.417 1 62.44 ? N5 9JI 1001 A 1 HETATM 34 N N6 9JI . . . C 2 -13.654 -32.797 55.894 1 67.07 ? N6 9JI 1001 A 1 HETATM 35 N N7 9JI . . . C 2 -17.978 -31.003 56.095 1 62.99 ? N7 9JI 1001 A 1 HETATM 36 N N8 9JI . . . C 2 -20.565 -24.763 56.1 1 66.26 ? N8 9JI 1001 A 1 HETATM 37 N N9 9JI . . . C 2 -22.693 -23.625 56.412 1 64.38 ? N9 9JI 1001 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #