data_8PQG
#
_model_server_result.job_id            9v5pCQ6HGPNEkbAj-3tVpg 
_model_server_result.datetime_utc      '2024-11-15 16:27:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pqg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    8PQG 
#
_exptl.entry_id    8PQG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              498.558 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Avapritinib 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PQG 
_cell.length_a            58.75 
_cell.length_b            59.09 
_cell.length_c            192.42 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PQG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C26 H27 F N10' 
_chem_comp.formula_weight    498.558 
_chem_comp.id                9JI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Avapritinib 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (1~{S})-1-(4-fluorophenyl)-1-[2-[4-[6-(1-methylpyrazol-4-yl)pyrrolo[2,1-f][1,2,4]triazin-4-yl]piperazin-1-yl]pyrimidin-5-yl]ethanamine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 N4 9JI sing 1 n n 
C21 C22 9JI sing 2 n n 
N1 C1 9JI doub 3 n y 
N1 N 9JI sing 4 n y 
N4 C8 9JI sing 5 n n 
N4 C9 9JI sing 6 n n 
C1 C2 9JI sing 7 n y 
C8 C7 9JI sing 8 n n 
C N 9JI sing 9 n n 
N C25 9JI sing 10 n y 
N5 C9 9JI doub 11 n y 
N5 C10 9JI sing 12 n y 
C22 N3 9JI sing 13 n n 
N3 C6 9JI sing 14 n n 
N3 C7 9JI sing 15 n n 
C2 C25 9JI doub 16 n y 
C2 C3 9JI sing 17 n n 
C24 C3 9JI sing 18 n y 
C24 C5 9JI doub 19 n y 
C9 N7 9JI sing 20 n y 
C3 C4 9JI doub 21 n y 
C5 C6 9JI sing 22 n y 
C5 N2 9JI sing 23 n y 
C6 N8 9JI doub 24 n y 
C10 C11 9JI doub 25 n y 
N6 C12 9JI sing 26 n n 
C4 N2 9JI sing 27 n y 
N2 N9 9JI sing 28 n y 
N7 C20 9JI doub 29 n y 
N8 C23 9JI sing 30 n y 
C23 N9 9JI doub 31 n y 
C11 C20 9JI sing 32 n y 
C11 C12 9JI sing 33 n n 
C12 C13 9JI sing 34 n n 
C12 C14 9JI sing 35 n n 
C14 C19 9JI doub 36 n y 
C14 C15 9JI sing 37 n y 
C19 C18 9JI sing 38 n y 
C15 C16 9JI doub 39 n y 
C18 C17 9JI doub 40 n y 
C17 C16 9JI sing 41 n y 
C17 F 9JI sing 42 n n 
C1 H1 9JI sing 43 n n 
C4 H2 9JI sing 44 n n 
C H3 9JI sing 45 n n 
C H4 9JI sing 46 n n 
C H5 9JI sing 47 n n 
C10 H6 9JI sing 48 n n 
C7 H7 9JI sing 49 n n 
C7 H8 9JI sing 50 n n 
C8 H9 9JI sing 51 n n 
C8 H10 9JI sing 52 n n 
C13 H11 9JI sing 53 n n 
C13 H12 9JI sing 54 n n 
C13 H13 9JI sing 55 n n 
C15 H14 9JI sing 56 n n 
C16 H15 9JI sing 57 n n 
C18 H16 9JI sing 58 n n 
C19 H17 9JI sing 59 n n 
C20 H18 9JI sing 60 n n 
C21 H19 9JI sing 61 n n 
C21 H20 9JI sing 62 n n 
C22 H21 9JI sing 63 n n 
C22 H22 9JI sing 64 n n 
C23 H23 9JI sing 65 n n 
C24 H24 9JI sing 66 n n 
C25 H25 9JI sing 67 n n 
N6 H26 9JI sing 68 n n 
N6 H27 9JI sing 69 n n 
#
_atom_sites.entry_id                     8PQG 
_atom_sites.fract_transf_matrix[1][1]    0.017021 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016923 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005197 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 9JI A 1 1001 1001 9JI AVA . 
D 2 9JI C 1 1001 1001 9JI AVA . 
E 3 HOH A 1 1101 29 HOH HOH . 
E 3 HOH A 2 1102 2 HOH HOH . 
E 3 HOH A 3 1103 10 HOH HOH . 
E 3 HOH A 4 1104 14 HOH HOH . 
E 3 HOH A 5 1105 30 HOH HOH . 
E 3 HOH A 6 1106 1 HOH HOH . 
E 3 HOH A 7 1107 4 HOH HOH . 
E 3 HOH A 8 1108 27 HOH HOH . 
E 3 HOH A 9 1109 28 HOH HOH . 
E 3 HOH A 10 1110 12 HOH HOH . 
E 3 HOH A 11 1111 18 HOH HOH . 
E 3 HOH A 12 1112 20 HOH HOH . 
E 3 HOH A 13 1113 25 HOH HOH . 
E 3 HOH A 14 1114 46 HOH HOH . 
E 3 HOH A 15 1115 19 HOH HOH . 
E 3 HOH A 16 1116 16 HOH HOH . 
E 3 HOH A 17 1117 11 HOH HOH . 
E 3 HOH A 18 1118 7 HOH HOH . 
E 3 HOH A 19 1119 6 HOH HOH . 
E 3 HOH A 20 1120 3 HOH HOH . 
E 3 HOH A 21 1121 45 HOH HOH . 
E 3 HOH A 22 1122 47 HOH HOH . 
E 3 HOH A 23 1123 26 HOH HOH . 
F 3 HOH C 1 1101 42 HOH HOH . 
F 3 HOH C 2 1102 40 HOH HOH . 
F 3 HOH C 3 1103 36 HOH HOH . 
F 3 HOH C 4 1104 34 HOH HOH . 
F 3 HOH C 5 1105 23 HOH HOH . 
F 3 HOH C 6 1106 31 HOH HOH . 
F 3 HOH C 7 1107 38 HOH HOH . 
F 3 HOH C 8 1108 21 HOH HOH . 
F 3 HOH C 9 1109 44 HOH HOH . 
F 3 HOH C 10 1110 35 HOH HOH . 
F 3 HOH C 11 1111 41 HOH HOH . 
F 3 HOH C 12 1112 24 HOH HOH . 
F 3 HOH C 13 1113 37 HOH HOH . 
F 3 HOH C 14 1114 22 HOH HOH . 
F 3 HOH C 15 1115 32 HOH HOH . 
F 3 HOH C 16 1116 43 HOH HOH . 
F 3 HOH C 17 1117 17 HOH HOH . 
F 3 HOH C 18 1118 39 HOH HOH . 
F 3 HOH C 19 1119 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 9JI . . . D 2 -5.541 13.485 -5.29 1 60.78 ? C1 9JI 1001 C 1 
HETATM 2 C C2 9JI . . . D 2 -4.979 12.202 -5.221 1 59.41 ? C2 9JI 1001 C 1 
HETATM 3 C C3 9JI . . . D 2 -5.64 10.912 -5.506 1 57.21 ? C3 9JI 1001 C 1 
HETATM 4 C C4 9JI . . . D 2 -6.944 10.693 -5.919 1 56.18 ? C4 9JI 1001 C 1 
HETATM 5 C C5 9JI . . . D 2 -5.931 8.668 -5.76 1 53.05 ? C5 9JI 1001 C 1 
HETATM 6 C C6 9JI . . . D 2 -5.928 7.24 -5.83 1 53.43 ? C6 9JI 1001 C 1 
HETATM 7 N N 9JI . . . D 2 -3.515 13.755 -4.739 1 62.98 ? N 9JI 1001 C 1 
HETATM 8 C C 9JI . . . D 2 -2.311 14.483 -4.354 1 69.91 ? C 9JI 1001 C 1 
HETATM 9 C C10 9JI . . . D 2 -1.592 1.257 -6.765 1 58.45 ? C10 9JI 1001 C 1 
HETATM 10 C C11 9JI . . . D 2 -0.374 1.601 -7.323 1 60.28 ? C11 9JI 1001 C 1 
HETATM 11 C C7 9JI . . . D 2 -3.597 6.595 -6.298 1 56.97 ? C7 9JI 1001 C 1 
HETATM 12 C C8 9JI . . . D 2 -2.505 5.753 -5.672 1 54.56 ? C8 9JI 1001 C 1 
HETATM 13 C C9 9JI . . . D 2 -2.03 3.42 -6.265 1 57.48 ? C9 9JI 1001 C 1 
HETATM 14 C C12 9JI . . . D 2 0.543 0.528 -7.919 1 61.67 ? C12 9JI 1001 C 1 
HETATM 15 C C13 9JI . . . D 2 1.84 1.174 -8.407 1 64.33 ? C13 9JI 1001 C 1 
HETATM 16 C C14 9JI . . . D 2 -0.159 -0.227 -9.055 1 59.91 ? C14 9JI 1001 C 1 
HETATM 17 C C15 9JI . . . D 2 -0.8 0.469 -10.075 1 58.95 ? C15 9JI 1001 C 1 
HETATM 18 C C16 9JI . . . D 2 -1.445 -0.197 -11.103 1 58.82 ? C16 9JI 1001 C 1 
HETATM 19 C C17 9JI . . . D 2 -1.439 -1.565 -11.092 1 58.92 ? C17 9JI 1001 C 1 
HETATM 20 C C18 9JI . . . D 2 -0.814 -2.298 -10.119 1 54.51 ? C18 9JI 1001 C 1 
HETATM 21 C C19 9JI . . . D 2 -0.174 -1.617 -9.096 1 58.82 ? C19 9JI 1001 C 1 
HETATM 22 C C20 9JI . . . D 2 -0.073 2.951 -7.3 1 60.46 ? C20 9JI 1001 C 1 
HETATM 23 C C21 9JI . . . D 2 -4.306 4.106 -5.687 1 49.48 ? C21 9JI 1001 C 1 
HETATM 24 C C22 9JI . . . D 2 -5.009 5.176 -4.882 1 55.61 ? C22 9JI 1001 C 1 
HETATM 25 C C23 9JI . . . D 2 -8.101 7.363 -6.458 1 52.36 ? C23 9JI 1001 C 1 
HETATM 26 C C24 9JI . . . D 2 -5.004 9.627 -5.409 1 54.92 ? C24 9JI 1001 C 1 
HETATM 27 C C25 9JI . . . D 2 -3.664 12.429 -4.86 1 57.11 ? C25 9JI 1001 C 1 
HETATM 28 F F 9JI . . . D 2 -2.113 -2.225 -12.07 1 57.33 ? F 9JI 1001 C 1 
HETATM 29 N N1 9JI . . . D 2 -4.661 14.431 -5.002 1 63.63 ? N1 9JI 1001 C 1 
HETATM 30 N N2 9JI . . . D 2 -7.091 9.349 -6.062 1 55.47 ? N2 9JI 1001 C 1 
HETATM 31 N N3 9JI . . . D 2 -4.831 6.486 -5.514 1 56.47 ? N3 9JI 1001 C 1 
HETATM 32 N N4 9JI . . . D 2 -2.858 4.332 -5.714 1 50.53 ? N4 9JI 1001 C 1 
HETATM 33 N N5 9JI . . . D 2 -2.435 2.146 -6.234 1 55.71 ? N5 9JI 1001 C 1 
HETATM 34 N N6 9JI . . . D 2 0.937 -0.424 -6.869 1 62.08 ? N6 9JI 1001 C 1 
HETATM 35 N N7 9JI . . . D 2 -0.884 3.878 -6.779 1 58.16 ? N7 9JI 1001 C 1 
HETATM 36 N N8 9JI . . . D 2 -7.042 6.584 -6.188 1 55.89 ? N8 9JI 1001 C 1 
HETATM 37 N N9 9JI . . . D 2 -8.242 8.703 -6.434 1 53.93 ? N9 9JI 1001 C 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           37 
#