data_8PQL # _model_server_result.job_id '_kh-ylBCvvgaAP1fetNwYg' _model_server_result.datetime_utc '2024-11-22 00:09:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pql # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":701}' # _entry.id 8PQL # _exptl.entry_id 8PQL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 101.147 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-azanylpentan-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PQL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PQL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 93 C CYS 93 1_555 I C3 SY8 . C SY8 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.702 ? covale ? covale2 I C SY8 . C SY8 701 1_555 B SG CYS 48 E CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.7 ? covale ? covale3 I N SY8 . C SY8 701 1_555 E C GLY 151 U GLY 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc1 D SG CYS 42 K CYS 42 1_555 J ZN ZN . K ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 D SG CYS 45 K CYS 45 1_555 J ZN ZN . K ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc3 D SG CYS 53 K CYS 53 1_555 L ZN ZN . K ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc4 D SG CYS 56 K CYS 56 1_555 L ZN ZN . K ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc5 D SG CYS 68 K CYS 68 1_555 L ZN ZN . K ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc6 D SG CYS 75 K CYS 75 1_555 K ZN ZN . K ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc7 D ND1 HIS 77 K HIS 77 1_555 K ZN ZN . K ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc8 D ND1 HIS 80 K HIS 80 1_555 J ZN ZN . K ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc9 D ND1 HIS 82 K HIS 82 1_555 L ZN ZN . K ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc10 D SG CYS 83 K CYS 83 1_555 J ZN ZN . K ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc11 D SG CYS 94 K CYS 94 1_555 K ZN ZN . K ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc12 D OD2 ASP 97 K ASP 97 1_555 K ZN ZN . K ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? # _chem_comp.formula 'C5 H11 N O' _chem_comp.formula_weight 101.147 _chem_comp.id SY8 _chem_comp.mon_nstd_flag . _chem_comp.name 5-azanylpentan-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C4 SY8 sing 288 n n C3 C2 SY8 sing 289 n n C4 N SY8 sing 290 n n C2 C1 SY8 sing 291 n n C C1 SY8 sing 292 n n C1 O SY8 doub 293 n n N H1 SY8 sing 294 n n N H2 SY8 sing 295 n n C H4 SY8 sing 296 n n C H5 SY8 sing 297 n n C H6 SY8 sing 298 n n C2 H7 SY8 sing 299 n n C2 H8 SY8 sing 300 n n C3 H9 SY8 sing 301 n n C3 H10 SY8 sing 302 n n C4 H11 SY8 sing 303 n n C4 H12 SY8 sing 304 n n # _atom_sites.entry_id 8PQL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 SY8 C 1 701 201 SY8 sdf . J 10 ZN K 1 201 201 ZN ZN . K 10 ZN K 1 202 202 ZN ZN . L 10 ZN K 1 203 203 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SY8 . . . I 9 180.055 175.57 106.019 1 89.47 ? N SY8 701 C 1 HETATM 2 C C SY8 . . . I 9 181.88 179.907 109.331 1 89.47 ? C SY8 701 C 1 HETATM 3 O O SY8 . . . I 9 182.495 177.701 108.691 1 89.47 ? O SY8 701 C 1 HETATM 4 C C1 SY8 . . . I 9 181.596 178.474 108.976 1 89.47 ? C1 SY8 701 C 1 HETATM 5 C C2 SY8 . . . I 9 180.169 177.975 108.982 1 89.47 ? C2 SY8 701 C 1 HETATM 6 C C3 SY8 . . . I 9 180.069 176.643 108.242 1 89.47 ? C3 SY8 701 C 1 HETATM 7 C C4 SY8 . . . I 9 180.057 176.86 106.731 1 89.47 ? C4 SY8 701 C 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #