data_8PQO # _model_server_result.job_id XaZch5bY5cdoVog2rpNFiw _model_server_result.datetime_utc '2024-11-15 15:36:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 8PQO # _exptl.entry_id 8PQO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PQO _cell.length_a 50.33 _cell.length_b 81.906 _cell.length_c 94.701 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 95 A CYS 94 1_555 B C3 A1IG7 6 C A1IG7 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? covale ? covale2 B C42 F8O 1 C F8O 1 1_555 B N MLU 2 C MLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale3 B C MLU 2 C MLU 2 1_555 B N 2TL 3 C 2TL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale4 B C 2TL 3 C 2TL 3 1_555 B N MV9 4 C MV9 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale5 B C MV9 4 C MV9 4 1_555 B N UYA 5 C UYA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale6 B C UYA 5 C UYA 5 1_555 B N7 A1IG7 6 C A1IG7 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? metalc ? metalc1 A OE1 GLU 42 A GLU 41 1_555 F NI NI . A NI 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.755 ? metalc ? metalc2 A NE2 HIS 64 A HIS 63 1_555 F NI NI . A NI 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc3 A OE2 GLU 181 A GLU 180 1_555 F NI NI . A NI 304 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc4 C N3 IMD . A IMD 301 1_555 F NI NI . A NI 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8PQO _atom_sites.fract_transf_matrix[1][1] 0.019869 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012209 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IMD A 1 301 301 IMD IMD . D 4 GOL A 1 302 302 GOL GOL . E 4 GOL A 1 303 303 GOL GOL . F 5 NI A 1 304 1 NI NI . G 4 GOL A 1 305 247 GOL GOL . H 6 HOH A 1 401 46 HOH HOH . H 6 HOH A 2 402 45 HOH HOH . H 6 HOH A 3 403 222 HOH HOH . H 6 HOH A 4 404 199 HOH HOH . H 6 HOH A 5 405 214 HOH HOH . H 6 HOH A 6 406 180 HOH HOH . H 6 HOH A 7 407 98 HOH HOH . H 6 HOH A 8 408 229 HOH HOH . H 6 HOH A 9 409 112 HOH HOH . H 6 HOH A 10 410 223 HOH HOH . H 6 HOH A 11 411 209 HOH HOH . H 6 HOH A 12 412 195 HOH HOH . H 6 HOH A 13 413 91 HOH HOH . H 6 HOH A 14 414 14 HOH HOH . H 6 HOH A 15 415 113 HOH HOH . H 6 HOH A 16 416 175 HOH HOH . H 6 HOH A 17 417 60 HOH HOH . H 6 HOH A 18 418 116 HOH HOH . H 6 HOH A 19 419 218 HOH HOH . H 6 HOH A 20 420 155 HOH HOH . H 6 HOH A 21 421 23 HOH HOH . H 6 HOH A 22 422 185 HOH HOH . H 6 HOH A 23 423 65 HOH HOH . H 6 HOH A 24 424 2 HOH HOH . H 6 HOH A 25 425 48 HOH HOH . H 6 HOH A 26 426 129 HOH HOH . H 6 HOH A 27 427 104 HOH HOH . H 6 HOH A 28 428 6 HOH HOH . H 6 HOH A 29 429 54 HOH HOH . H 6 HOH A 30 430 5 HOH HOH . H 6 HOH A 31 431 226 HOH HOH . H 6 HOH A 32 432 21 HOH HOH . H 6 HOH A 33 433 3 HOH HOH . H 6 HOH A 34 434 231 HOH HOH . H 6 HOH A 35 435 216 HOH HOH . H 6 HOH A 36 436 117 HOH HOH . H 6 HOH A 37 437 146 HOH HOH . H 6 HOH A 38 438 38 HOH HOH . H 6 HOH A 39 439 88 HOH HOH . H 6 HOH A 40 440 17 HOH HOH . H 6 HOH A 41 441 39 HOH HOH . H 6 HOH A 42 442 186 HOH HOH . H 6 HOH A 43 443 86 HOH HOH . H 6 HOH A 44 444 133 HOH HOH . H 6 HOH A 45 445 211 HOH HOH . H 6 HOH A 46 446 127 HOH HOH . H 6 HOH A 47 447 68 HOH HOH . H 6 HOH A 48 448 154 HOH HOH . H 6 HOH A 49 449 208 HOH HOH . H 6 HOH A 50 450 30 HOH HOH . H 6 HOH A 51 451 130 HOH HOH . H 6 HOH A 52 452 44 HOH HOH . H 6 HOH A 53 453 230 HOH HOH . H 6 HOH A 54 454 19 HOH HOH . H 6 HOH A 55 455 109 HOH HOH . H 6 HOH A 56 456 27 HOH HOH . H 6 HOH A 57 457 52 HOH HOH . H 6 HOH A 58 458 4 HOH HOH . H 6 HOH A 59 459 67 HOH HOH . H 6 HOH A 60 460 63 HOH HOH . H 6 HOH A 61 461 191 HOH HOH . H 6 HOH A 62 462 8 HOH HOH . H 6 HOH A 63 463 97 HOH HOH . H 6 HOH A 64 464 147 HOH HOH . H 6 HOH A 65 465 29 HOH HOH . H 6 HOH A 66 466 43 HOH HOH . H 6 HOH A 67 467 11 HOH HOH . H 6 HOH A 68 468 1 HOH HOH . H 6 HOH A 69 469 64 HOH HOH . H 6 HOH A 70 470 69 HOH HOH . H 6 HOH A 71 471 166 HOH HOH . H 6 HOH A 72 472 26 HOH HOH . H 6 HOH A 73 473 120 HOH HOH . H 6 HOH A 74 474 167 HOH HOH . H 6 HOH A 75 475 41 HOH HOH . H 6 HOH A 76 476 145 HOH HOH . H 6 HOH A 77 477 50 HOH HOH . H 6 HOH A 78 478 119 HOH HOH . H 6 HOH A 79 479 34 HOH HOH . H 6 HOH A 80 480 140 HOH HOH . H 6 HOH A 81 481 224 HOH HOH . H 6 HOH A 82 482 164 HOH HOH . H 6 HOH A 83 483 66 HOH HOH . H 6 HOH A 84 484 78 HOH HOH . H 6 HOH A 85 485 10 HOH HOH . H 6 HOH A 86 486 18 HOH HOH . H 6 HOH A 87 487 240 HOH HOH . H 6 HOH A 88 488 58 HOH HOH . H 6 HOH A 89 489 159 HOH HOH . H 6 HOH A 90 490 198 HOH HOH . H 6 HOH A 91 491 165 HOH HOH . H 6 HOH A 92 492 197 HOH HOH . H 6 HOH A 93 493 28 HOH HOH . H 6 HOH A 94 494 128 HOH HOH . H 6 HOH A 95 495 246 HOH HOH . H 6 HOH A 96 496 84 HOH HOH . H 6 HOH A 97 497 124 HOH HOH . H 6 HOH A 98 498 47 HOH HOH . H 6 HOH A 99 499 25 HOH HOH . H 6 HOH A 100 500 152 HOH HOH . H 6 HOH A 101 501 156 HOH HOH . H 6 HOH A 102 502 56 HOH HOH . H 6 HOH A 103 503 87 HOH HOH . H 6 HOH A 104 504 40 HOH HOH . H 6 HOH A 105 505 33 HOH HOH . H 6 HOH A 106 506 242 HOH HOH . H 6 HOH A 107 507 177 HOH HOH . H 6 HOH A 108 508 93 HOH HOH . H 6 HOH A 109 509 107 HOH HOH . H 6 HOH A 110 510 73 HOH HOH . H 6 HOH A 111 511 59 HOH HOH . H 6 HOH A 112 512 42 HOH HOH . H 6 HOH A 113 513 32 HOH HOH . H 6 HOH A 114 514 108 HOH HOH . H 6 HOH A 115 515 233 HOH HOH . H 6 HOH A 116 516 83 HOH HOH . H 6 HOH A 117 517 9 HOH HOH . H 6 HOH A 118 518 81 HOH HOH . H 6 HOH A 119 519 220 HOH HOH . H 6 HOH A 120 520 76 HOH HOH . H 6 HOH A 121 521 149 HOH HOH . H 6 HOH A 122 522 80 HOH HOH . H 6 HOH A 123 523 53 HOH HOH . H 6 HOH A 124 524 70 HOH HOH . H 6 HOH A 125 525 176 HOH HOH . H 6 HOH A 126 526 143 HOH HOH . H 6 HOH A 127 527 118 HOH HOH . H 6 HOH A 128 528 61 HOH HOH . H 6 HOH A 129 529 163 HOH HOH . H 6 HOH A 130 530 7 HOH HOH . H 6 HOH A 131 531 212 HOH HOH . H 6 HOH A 132 532 35 HOH HOH . H 6 HOH A 133 533 207 HOH HOH . H 6 HOH A 134 534 241 HOH HOH . H 6 HOH A 135 535 13 HOH HOH . H 6 HOH A 136 536 110 HOH HOH . H 6 HOH A 137 537 103 HOH HOH . H 6 HOH A 138 538 243 HOH HOH . H 6 HOH A 139 539 94 HOH HOH . H 6 HOH A 140 540 158 HOH HOH . H 6 HOH A 141 541 100 HOH HOH . H 6 HOH A 142 542 77 HOH HOH . H 6 HOH A 143 543 75 HOH HOH . H 6 HOH A 144 544 161 HOH HOH . H 6 HOH A 145 545 36 HOH HOH . H 6 HOH A 146 546 201 HOH HOH . H 6 HOH A 147 547 139 HOH HOH . H 6 HOH A 148 548 194 HOH HOH . H 6 HOH A 149 549 193 HOH HOH . H 6 HOH A 150 550 92 HOH HOH . H 6 HOH A 151 551 151 HOH HOH . H 6 HOH A 152 552 206 HOH HOH . H 6 HOH A 153 553 148 HOH HOH . H 6 HOH A 154 554 51 HOH HOH . H 6 HOH A 155 555 190 HOH HOH . H 6 HOH A 156 556 239 HOH HOH . H 6 HOH A 157 557 142 HOH HOH . H 6 HOH A 158 558 213 HOH HOH . H 6 HOH A 159 559 150 HOH HOH . H 6 HOH A 160 560 204 HOH HOH . H 6 HOH A 161 561 74 HOH HOH . H 6 HOH A 162 562 134 HOH HOH . H 6 HOH A 163 563 225 HOH HOH . H 6 HOH A 164 564 89 HOH HOH . H 6 HOH A 165 565 106 HOH HOH . H 6 HOH A 166 566 96 HOH HOH . H 6 HOH A 167 567 31 HOH HOH . H 6 HOH A 168 568 62 HOH HOH . H 6 HOH A 169 569 136 HOH HOH . H 6 HOH A 170 570 202 HOH HOH . H 6 HOH A 171 571 71 HOH HOH . H 6 HOH A 172 572 232 HOH HOH . H 6 HOH A 173 573 219 HOH HOH . H 6 HOH A 174 574 141 HOH HOH . H 6 HOH A 175 575 55 HOH HOH . H 6 HOH A 176 576 90 HOH HOH . H 6 HOH A 177 577 102 HOH HOH . H 6 HOH A 178 578 215 HOH HOH . H 6 HOH A 179 579 227 HOH HOH . H 6 HOH A 180 580 160 HOH HOH . H 6 HOH A 181 581 95 HOH HOH . H 6 HOH A 182 582 210 HOH HOH . H 6 HOH A 183 583 132 HOH HOH . H 6 HOH A 184 584 234 HOH HOH . H 6 HOH A 185 585 162 HOH HOH . H 6 HOH A 186 586 217 HOH HOH . H 6 HOH A 187 587 238 HOH HOH . H 6 HOH A 188 588 237 HOH HOH . H 6 HOH A 189 589 236 HOH HOH . H 6 HOH A 190 590 157 HOH HOH . H 6 HOH A 191 591 235 HOH HOH . H 6 HOH A 192 592 187 HOH HOH . H 6 HOH A 193 593 37 HOH HOH . H 6 HOH A 194 594 99 HOH HOH . H 6 HOH A 195 595 168 HOH HOH . H 6 HOH A 196 596 85 HOH HOH . H 6 HOH A 197 597 189 HOH HOH . H 6 HOH A 198 598 183 HOH HOH . H 6 HOH A 199 599 138 HOH HOH . H 6 HOH A 200 600 184 HOH HOH . H 6 HOH A 201 601 111 HOH HOH . H 6 HOH A 202 602 131 HOH HOH . H 6 HOH A 203 603 153 HOH HOH . H 6 HOH A 204 604 105 HOH HOH . H 6 HOH A 205 605 101 HOH HOH . H 6 HOH A 206 606 200 HOH HOH . H 6 HOH A 207 607 173 HOH HOH . H 6 HOH A 208 608 16 HOH HOH . H 6 HOH A 209 609 169 HOH HOH . H 6 HOH A 210 610 203 HOH HOH . H 6 HOH A 211 611 79 HOH HOH . H 6 HOH A 212 612 115 HOH HOH . H 6 HOH A 213 613 182 HOH HOH . H 6 HOH A 214 614 181 HOH HOH . H 6 HOH A 215 615 179 HOH HOH . H 6 HOH A 216 616 57 HOH HOH . H 6 HOH A 217 617 82 HOH HOH . H 6 HOH A 218 618 170 HOH HOH . H 6 HOH A 219 619 221 HOH HOH . H 6 HOH A 220 620 178 HOH HOH . H 6 HOH A 221 621 171 HOH HOH . H 6 HOH A 222 622 192 HOH HOH . H 6 HOH A 223 623 137 HOH HOH . H 6 HOH A 224 624 174 HOH HOH . H 6 HOH A 225 625 172 HOH HOH . H 6 HOH A 226 626 135 HOH HOH . H 6 HOH A 227 627 205 HOH HOH . H 6 HOH A 228 628 126 HOH HOH . I 6 HOH C 1 101 122 HOH HOH . I 6 HOH C 2 102 125 HOH HOH . I 6 HOH C 3 103 12 HOH HOH . I 6 HOH C 4 104 228 HOH HOH . I 6 HOH C 5 105 123 HOH HOH . I 6 HOH C 6 106 196 HOH HOH . I 6 HOH C 7 107 121 HOH HOH . I 6 HOH C 8 108 188 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 27.062 _atom_site.Cartn_y 10.362 _atom_site.Cartn_z -14.205 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 304 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #