data_8PRT # _model_server_result.job_id hR-obfJ6woiEpWkNz0_STQ _model_server_result.datetime_utc '2024-10-10 10:23:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8prt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 8PRT # _exptl.entry_id 8PRT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PRT _cell.length_a 55.993 _cell.length_b 55.993 _cell.length_c 108.192 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PRT _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N THR 5 A THR 0 1_555 A C GLU 84 A GLU 79 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? metalc ? metalc1 A NE2 HIS 28 A HIS 23 1_555 C CO CO . A CO 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc2 A NE2 HIS 28 A HIS 23 1_555 C CO CO . A CO 102 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc3 A NE2 HIS 68 A HIS 63 1_555 B CO CO . A CO 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc4 A NE2 HIS 68 A HIS 63 1_555 B CO CO . A CO 101 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc5 B CO CO . A CO 101 1_555 D O HOH . A HOH 202 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc6 B CO CO . A CO 101 1_555 D O HOH . A HOH 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc7 B CO CO . A CO 101 1_555 D O HOH . A HOH 228 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc8 C CO CO . A CO 102 1_555 D O HOH . A HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc9 C CO CO . A CO 102 1_555 D O HOH . A HOH 201 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc10 C CO CO . A CO 102 1_555 D O HOH . A HOH 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc11 C CO CO . A CO 102 1_555 D O HOH . A HOH 224 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8PRT _atom_sites.fract_transf_matrix[1][1] 0.017859 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 101 1 CO CO . C 2 CO A 1 102 2 CO CO . D 3 HOH A 1 201 2 HOH HOH . D 3 HOH A 2 202 1 HOH HOH . D 3 HOH A 3 203 51 HOH HOH . D 3 HOH A 4 204 101 HOH HOH . D 3 HOH A 5 205 27 HOH HOH . D 3 HOH A 6 206 105 HOH HOH . D 3 HOH A 7 207 41 HOH HOH . D 3 HOH A 8 208 94 HOH HOH . D 3 HOH A 9 209 60 HOH HOH . D 3 HOH A 10 210 77 HOH HOH . D 3 HOH A 11 211 44 HOH HOH . D 3 HOH A 12 212 26 HOH HOH . D 3 HOH A 13 213 47 HOH HOH . D 3 HOH A 14 214 93 HOH HOH . D 3 HOH A 15 215 10 HOH HOH . D 3 HOH A 16 216 9 HOH HOH . D 3 HOH A 17 217 14 HOH HOH . D 3 HOH A 18 218 15 HOH HOH . D 3 HOH A 19 219 32 HOH HOH . D 3 HOH A 20 220 42 HOH HOH . D 3 HOH A 21 221 22 HOH HOH . D 3 HOH A 22 222 88 HOH HOH . D 3 HOH A 23 223 12 HOH HOH . D 3 HOH A 24 224 98 HOH HOH . D 3 HOH A 25 225 49 HOH HOH . D 3 HOH A 26 226 7 HOH HOH . D 3 HOH A 27 227 80 HOH HOH . D 3 HOH A 28 228 99 HOH HOH . D 3 HOH A 29 229 4 HOH HOH . D 3 HOH A 30 230 65 HOH HOH . D 3 HOH A 31 231 54 HOH HOH . D 3 HOH A 32 232 23 HOH HOH . D 3 HOH A 33 233 18 HOH HOH . D 3 HOH A 34 234 6 HOH HOH . D 3 HOH A 35 235 102 HOH HOH . D 3 HOH A 36 236 8 HOH HOH . D 3 HOH A 37 237 30 HOH HOH . D 3 HOH A 38 238 5 HOH HOH . D 3 HOH A 39 239 3 HOH HOH . D 3 HOH A 40 240 96 HOH HOH . D 3 HOH A 41 241 20 HOH HOH . D 3 HOH A 42 242 13 HOH HOH . D 3 HOH A 43 243 76 HOH HOH . D 3 HOH A 44 244 43 HOH HOH . D 3 HOH A 45 245 33 HOH HOH . D 3 HOH A 46 246 38 HOH HOH . D 3 HOH A 47 247 48 HOH HOH . D 3 HOH A 48 248 36 HOH HOH . D 3 HOH A 49 249 25 HOH HOH . D 3 HOH A 50 250 72 HOH HOH . D 3 HOH A 51 251 69 HOH HOH . D 3 HOH A 52 252 53 HOH HOH . D 3 HOH A 53 253 31 HOH HOH . D 3 HOH A 54 254 19 HOH HOH . D 3 HOH A 55 255 29 HOH HOH . D 3 HOH A 56 256 74 HOH HOH . D 3 HOH A 57 257 63 HOH HOH . D 3 HOH A 58 258 16 HOH HOH . D 3 HOH A 59 259 45 HOH HOH . D 3 HOH A 60 260 35 HOH HOH . D 3 HOH A 61 261 87 HOH HOH . D 3 HOH A 62 262 37 HOH HOH . D 3 HOH A 63 263 56 HOH HOH . D 3 HOH A 64 264 21 HOH HOH . D 3 HOH A 65 265 11 HOH HOH . D 3 HOH A 66 266 81 HOH HOH . D 3 HOH A 67 267 92 HOH HOH . D 3 HOH A 68 268 17 HOH HOH . D 3 HOH A 69 269 95 HOH HOH . D 3 HOH A 70 270 89 HOH HOH . D 3 HOH A 71 271 82 HOH HOH . D 3 HOH A 72 272 24 HOH HOH . D 3 HOH A 73 273 104 HOH HOH . D 3 HOH A 74 274 40 HOH HOH . D 3 HOH A 75 275 59 HOH HOH . D 3 HOH A 76 276 78 HOH HOH . D 3 HOH A 77 277 58 HOH HOH . D 3 HOH A 78 278 62 HOH HOH . D 3 HOH A 79 279 39 HOH HOH . D 3 HOH A 80 280 50 HOH HOH . D 3 HOH A 81 281 100 HOH HOH . D 3 HOH A 82 282 66 HOH HOH . D 3 HOH A 83 283 79 HOH HOH . D 3 HOH A 84 284 106 HOH HOH . D 3 HOH A 85 285 61 HOH HOH . D 3 HOH A 86 286 28 HOH HOH . D 3 HOH A 87 287 86 HOH HOH . D 3 HOH A 88 288 85 HOH HOH . D 3 HOH A 89 289 57 HOH HOH . D 3 HOH A 90 290 67 HOH HOH . D 3 HOH A 91 291 70 HOH HOH . D 3 HOH A 92 292 83 HOH HOH . D 3 HOH A 93 293 90 HOH HOH . D 3 HOH A 94 294 75 HOH HOH . D 3 HOH A 95 295 46 HOH HOH . D 3 HOH A 96 296 97 HOH HOH . D 3 HOH A 97 297 73 HOH HOH . D 3 HOH A 98 298 52 HOH HOH . D 3 HOH A 99 299 55 HOH HOH . D 3 HOH A 100 300 91 HOH HOH . D 3 HOH A 101 301 64 HOH HOH . D 3 HOH A 102 302 71 HOH HOH . D 3 HOH A 103 303 68 HOH HOH . D 3 HOH A 104 304 34 HOH HOH . D 3 HOH A 105 305 84 HOH HOH . D 3 HOH A 106 306 103 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -14.346 _atom_site.Cartn_y 0 _atom_site.Cartn_z 0 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 22.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #