data_8PRV
#
_model_server_result.job_id            OTM72K6x-N8FvXKK0nyxFA 
_model_server_result.datetime_utc      '2024-12-26 16:29:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8prv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1901}' 
#
_entry.id    8PRV 
#
_exptl.entry_id    8PRV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PRV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PRV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 1246 A CYS 1246 1_555 A SG CYS 1327 A CYS 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
covale ? covale1 B CB SER 180 B SER 180 1_555 E O23 A5S . B A5S 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? 
covale ? covale2 C C HIS 1807 G HIS 1807 1_555 C N J8W 1808 G J8W 1808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 C C J8W 1808 G J8W 1808 1_555 C N LEU 1809 G LEU 1809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 450 n n 
PA O2A NAP sing 451 n n 
PA O5B NAP sing 452 n n 
PA O3 NAP sing 453 n n 
O2A HOA2 NAP sing 454 n n 
O5B C5B NAP sing 455 n n 
C5B C4B NAP sing 456 n n 
C5B H51A NAP sing 457 n n 
C5B H52A NAP sing 458 n n 
C4B O4B NAP sing 459 n n 
C4B C3B NAP sing 460 n n 
C4B H4B NAP sing 461 n n 
O4B C1B NAP sing 462 n n 
C3B O3B NAP sing 463 n n 
C3B C2B NAP sing 464 n n 
C3B H3B NAP sing 465 n n 
O3B HO3A NAP sing 466 n n 
C2B O2B NAP sing 467 n n 
C2B C1B NAP sing 468 n n 
C2B H2B NAP sing 469 n n 
O2B P2B NAP sing 470 n n 
C1B N9A NAP sing 471 n n 
C1B H1B NAP sing 472 n n 
N9A C8A NAP sing 473 n y 
N9A C4A NAP sing 474 n y 
C8A N7A NAP doub 475 n y 
C8A H8A NAP sing 476 n n 
N7A C5A NAP sing 477 n y 
C5A C6A NAP sing 478 n y 
C5A C4A NAP doub 479 n y 
C6A N6A NAP sing 480 n n 
C6A N1A NAP doub 481 n y 
N6A H61A NAP sing 482 n n 
N6A H62A NAP sing 483 n n 
N1A C2A NAP sing 484 n y 
C2A N3A NAP doub 485 n y 
C2A H2A NAP sing 486 n n 
N3A C4A NAP sing 487 n y 
O3 PN NAP sing 488 n n 
PN O1N NAP doub 489 n n 
PN O2N NAP sing 490 n n 
PN O5D NAP sing 491 n n 
O5D C5D NAP sing 492 n n 
C5D C4D NAP sing 493 n n 
C5D H51N NAP sing 494 n n 
C5D H52N NAP sing 495 n n 
C4D O4D NAP sing 496 n n 
C4D C3D NAP sing 497 n n 
C4D H4D NAP sing 498 n n 
O4D C1D NAP sing 499 n n 
C3D O3D NAP sing 500 n n 
C3D C2D NAP sing 501 n n 
C3D H3D NAP sing 502 n n 
O3D HO3N NAP sing 503 n n 
C2D O2D NAP sing 504 n n 
C2D C1D NAP sing 505 n n 
C2D H2D NAP sing 506 n n 
O2D HO2N NAP sing 507 n n 
C1D N1N NAP sing 508 n n 
C1D H1D NAP sing 509 n n 
N1N C2N NAP sing 510 n y 
N1N C6N NAP doub 511 n y 
C2N C3N NAP doub 512 n y 
C2N H2N NAP sing 513 n n 
C3N C7N NAP sing 514 n n 
C3N C4N NAP sing 515 n y 
C7N O7N NAP doub 516 n n 
C7N N7N NAP sing 517 n n 
N7N H71N NAP sing 518 n n 
N7N H72N NAP sing 519 n n 
C4N C5N NAP doub 520 n y 
C4N H4N NAP sing 521 n n 
C5N C6N NAP sing 522 n y 
C5N H5N NAP sing 523 n n 
C6N H6N NAP sing 524 n n 
P2B O1X NAP doub 525 n n 
P2B O2X NAP sing 526 n n 
P2B O3X NAP sing 527 n n 
O2X HOP2 NAP sing 528 n n 
O3X HOP3 NAP sing 529 n n 
#
_atom_sites.entry_id                     8PRV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 NAP A 1 1901 1901 NAP NAP . 
E 4 A5S B 1 1901 180 A5S PKR . 
F 5 FMN G 1 2101 2101 FMN FMN . 
G 3 NAP G 1 2102 2201 NAP NAP . 
H 6 COA G 1 2103 2301 COA COA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . D 3 128.635 154.329 168.609 1 14.13 ? PA NAP 1901 A 1 
HETATM 2 O O1A NAP . . . D 3 129.952 154.194 167.949 1 13.93 ? O1A NAP 1901 A 1 
HETATM 3 O O2A NAP . . . D 3 127.339 153.932 167.893 1 15.14 ? O2A NAP 1901 A 1 
HETATM 4 O O5B NAP . . . D 3 128.658 153.52 169.949 1 16.1 ? O5B NAP 1901 A 1 
HETATM 5 C C5B NAP . . . D 3 127.422 153.179 170.563 1 17.69 ? C5B NAP 1901 A 1 
HETATM 6 C C4B NAP . . . D 3 127.51 151.705 171.003 1 18.61 ? C4B NAP 1901 A 1 
HETATM 7 O O4B NAP . . . D 3 126.358 151.439 171.769 1 18.31 ? O4B NAP 1901 A 1 
HETATM 8 C C3B NAP . . . D 3 127.434 150.689 169.903 1 19.75 ? C3B NAP 1901 A 1 
HETATM 9 O O3B NAP . . . D 3 128.787 150.575 169.412 1 22.66 ? O3B NAP 1901 A 1 
HETATM 10 C C2B NAP . . . D 3 126.862 149.492 170.588 1 19.78 ? C2B NAP 1901 A 1 
HETATM 11 O O2B NAP . . . D 3 127.895 148.637 171.102 1 24.64 ? O2B NAP 1901 A 1 
HETATM 12 C C1B NAP . . . D 3 126.166 150.071 171.781 1 18.1 ? C1B NAP 1901 A 1 
HETATM 13 N N9A NAP . . . D 3 124.743 149.83 171.783 1 17.32 ? N9A NAP 1901 A 1 
HETATM 14 C C8A NAP . . . D 3 123.885 149.983 170.776 1 17.73 ? C8A NAP 1901 A 1 
HETATM 15 N N7A NAP . . . D 3 122.634 149.618 171.161 1 17.7 ? N7A NAP 1901 A 1 
HETATM 16 C C5A NAP . . . D 3 122.743 149.281 172.44 1 16.77 ? C5A NAP 1901 A 1 
HETATM 17 C C6A NAP . . . D 3 121.825 148.816 173.423 1 16.73 ? C6A NAP 1901 A 1 
HETATM 18 N N6A NAP . . . D 3 120.545 148.683 173.077 1 17.84 ? N6A NAP 1901 A 1 
HETATM 19 N N1A NAP . . . D 3 122.273 148.573 174.635 1 16.59 ? N1A NAP 1901 A 1 
HETATM 20 C C2A NAP . . . D 3 123.558 148.722 174.936 1 16.9 ? C2A NAP 1901 A 1 
HETATM 21 N N3A NAP . . . D 3 124.489 149.102 174.062 1 16.65 ? N3A NAP 1901 A 1 
HETATM 22 C C4A NAP . . . D 3 124.115 149.402 172.834 1 16.46 ? C4A NAP 1901 A 1 
HETATM 23 O O3 NAP . . . D 3 128.439 155.715 169.341 1 16 ? O3 NAP 1901 A 1 
HETATM 24 P PN NAP . . . D 3 129.659 156.7 169.547 1 18.01 ? PN NAP 1901 A 1 
HETATM 25 O O1N NAP . . . D 3 129.761 157.202 168.15 1 19.61 ? O1N NAP 1901 A 1 
HETATM 26 O O2N NAP . . . D 3 130.823 156.092 170.302 1 19.01 ? O2N NAP 1901 A 1 
HETATM 27 O O5D NAP . . . D 3 129.112 157.824 170.525 1 18.65 ? O5D NAP 1901 A 1 
HETATM 28 C C5D NAP . . . D 3 128.912 157.41 171.848 1 19.53 ? C5D NAP 1901 A 1 
HETATM 29 C C4D NAP . . . D 3 128.184 158.411 172.698 1 20.55 ? C4D NAP 1901 A 1 
HETATM 30 O O4D NAP . . . D 3 128.856 159.653 172.543 1 22.6 ? O4D NAP 1901 A 1 
HETATM 31 C C3D NAP . . . D 3 126.741 158.576 172.289 1 20.6 ? C3D NAP 1901 A 1 
HETATM 32 O O3D NAP . . . D 3 125.985 158.808 173.479 1 20.42 ? O3D NAP 1901 A 1 
HETATM 33 C C2D NAP . . . D 3 126.762 159.801 171.415 1 22.12 ? C2D NAP 1901 A 1 
HETATM 34 O O2D NAP . . . D 3 125.628 160.637 171.484 1 23.27 ? O2D NAP 1901 A 1 
HETATM 35 C C1D NAP . . . D 3 127.887 160.577 172.03 1 23.71 ? C1D NAP 1901 A 1 
HETATM 36 N N1N NAP . . . D 3 128.462 161.46 171.054 1 24.85 ? N1N NAP 1901 A 1 
HETATM 37 C C2N NAP . . . D 3 129.079 160.969 169.985 1 25.14 ? C2N NAP 1901 A 1 
HETATM 38 C C3N NAP . . . D 3 129.62 161.842 169.055 1 25.41 ? C3N NAP 1901 A 1 
HETATM 39 C C7N NAP . . . D 3 130.296 161.227 167.903 1 24.04 ? C7N NAP 1901 A 1 
HETATM 40 O O7N NAP . . . D 3 130.282 160.023 167.719 1 23.04 ? O7N NAP 1901 A 1 
HETATM 41 N N7N NAP . . . D 3 130.972 161.971 167.092 1 23.68 ? N7N NAP 1901 A 1 
HETATM 42 C C4N NAP . . . D 3 129.549 163.22 169.25 1 25.96 ? C4N NAP 1901 A 1 
HETATM 43 C C5N NAP . . . D 3 128.894 163.7 170.375 1 27.5 ? C5N NAP 1901 A 1 
HETATM 44 C C6N NAP . . . D 3 128.353 162.779 171.28 1 27.56 ? C6N NAP 1901 A 1 
HETATM 45 P P2B NAP . . . D 3 127.802 147.014 171.3 1 28.89 ? P2B NAP 1901 A 1 
HETATM 46 O O1X NAP . . . D 3 128.049 146.502 169.896 1 29.52 ? O1X NAP 1901 A 1 
HETATM 47 O O2X NAP . . . D 3 128.909 146.828 172.361 1 26.93 ? O2X NAP 1901 A 1 
HETATM 48 O O3X NAP . . . D 3 126.378 146.664 171.695 1 26.62 ? O3X NAP 1901 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    68 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#