data_8PRV
#
_model_server_result.job_id            ef7FtCBmk6lmYTnFicQpzQ 
_model_server_result.datetime_utc      '2024-12-26 16:25:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8prv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2101}' 
#
_entry.id    8PRV 
#
_exptl.entry_id    8PRV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PRV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PRV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 1246 A CYS 1246 1_555 A SG CYS 1327 A CYS 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
covale ? covale1 B CB SER 180 B SER 180 1_555 E O23 A5S . B A5S 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? 
covale ? covale2 C C HIS 1807 G HIS 1807 1_555 C N J8W 1808 G J8W 1808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 C C J8W 1808 G J8W 1808 1_555 C N LEU 1809 G LEU 1809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 223 n n 
N1 C10 FMN doub 224 n n 
C2 O2 FMN doub 225 n n 
C2 N3 FMN sing 226 n n 
N3 C4 FMN sing 227 n n 
N3 HN3 FMN sing 228 n n 
C4 O4 FMN doub 229 n n 
C4 C4A FMN sing 230 n n 
C4A N5 FMN doub 231 n n 
C4A C10 FMN sing 232 n n 
N5 C5A FMN sing 233 n n 
C5A C6 FMN doub 234 n y 
C5A C9A FMN sing 235 n y 
C6 C7 FMN sing 236 n y 
C6 H6 FMN sing 237 n n 
C7 C7M FMN sing 238 n n 
C7 C8 FMN doub 239 n y 
C7M HM71 FMN sing 240 n n 
C7M HM72 FMN sing 241 n n 
C7M HM73 FMN sing 242 n n 
C8 C8M FMN sing 243 n n 
C8 C9 FMN sing 244 n y 
C8M HM81 FMN sing 245 n n 
C8M HM82 FMN sing 246 n n 
C8M HM83 FMN sing 247 n n 
C9 C9A FMN doub 248 n y 
C9 H9 FMN sing 249 n n 
C9A N10 FMN sing 250 n n 
N10 C10 FMN sing 251 n n 
N10 C1' FMN sing 252 n n 
C1' C2' FMN sing 253 n n 
C1' "H1'1" FMN sing 254 n n 
C1' "H1'2" FMN sing 255 n n 
C2' O2' FMN sing 256 n n 
C2' C3' FMN sing 257 n n 
C2' H2' FMN sing 258 n n 
O2' HO2' FMN sing 259 n n 
C3' O3' FMN sing 260 n n 
C3' C4' FMN sing 261 n n 
C3' H3' FMN sing 262 n n 
O3' HO3' FMN sing 263 n n 
C4' O4' FMN sing 264 n n 
C4' C5' FMN sing 265 n n 
C4' H4' FMN sing 266 n n 
O4' HO4' FMN sing 267 n n 
C5' O5' FMN sing 268 n n 
C5' "H5'1" FMN sing 269 n n 
C5' "H5'2" FMN sing 270 n n 
O5' P FMN sing 271 n n 
P O1P FMN doub 272 n n 
P O2P FMN sing 273 n n 
P O3P FMN sing 274 n n 
O2P HOP2 FMN sing 275 n n 
O3P HOP3 FMN sing 276 n n 
#
_atom_sites.entry_id                     8PRV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 NAP A 1 1901 1901 NAP NAP . 
E 4 A5S B 1 1901 180 A5S PKR . 
F 5 FMN G 1 2101 2101 FMN FMN . 
G 3 NAP G 1 2102 2201 NAP NAP . 
H 6 COA G 1 2103 2301 COA COA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . F 5 145.701 108.596 95.427 1 36 ? N1 FMN 2101 G 1 
HETATM 2 C C2 FMN . . . F 5 144.603 109.299 95.732 1 36.26 ? C2 FMN 2101 G 1 
HETATM 3 O O2 FMN . . . F 5 143.535 108.967 95.175 1 36.07 ? O2 FMN 2101 G 1 
HETATM 4 N N3 FMN . . . F 5 144.649 110.306 96.638 1 36.68 ? N3 FMN 2101 G 1 
HETATM 5 C C4 FMN . . . F 5 145.767 110.681 97.305 1 33.81 ? C4 FMN 2101 G 1 
HETATM 6 O O4 FMN . . . F 5 145.76 111.618 98.147 1 32.92 ? O4 FMN 2101 G 1 
HETATM 7 C C4A FMN . . . F 5 146.994 109.924 96.983 1 32.33 ? C4A FMN 2101 G 1 
HETATM 8 N N5 FMN . . . F 5 148.16 110.174 97.544 1 32.13 ? N5 FMN 2101 G 1 
HETATM 9 C C5A FMN . . . F 5 149.236 109.46 97.171 1 33.88 ? C5A FMN 2101 G 1 
HETATM 10 C C6 FMN . . . F 5 150.438 109.774 97.736 1 37.58 ? C6 FMN 2101 G 1 
HETATM 11 C C7 FMN . . . F 5 151.585 109.114 97.41 1 35.08 ? C7 FMN 2101 G 1 
HETATM 12 C C7M FMN . . . F 5 152.799 109.589 98.105 1 39.08 ? C7M FMN 2101 G 1 
HETATM 13 C C8 FMN . . . F 5 151.58 108.036 96.44 1 33.11 ? C8 FMN 2101 G 1 
HETATM 14 C C8M FMN . . . F 5 152.841 107.322 96.077 1 34.09 ? C8M FMN 2101 G 1 
HETATM 15 C C9 FMN . . . F 5 150.398 107.708 95.859 1 32.55 ? C9 FMN 2101 G 1 
HETATM 16 C C9A FMN . . . F 5 149.229 108.389 96.181 1 32.92 ? C9A FMN 2101 G 1 
HETATM 17 N N10 FMN . . . F 5 148.001 108.109 95.611 1 33.99 ? N10 FMN 2101 G 1 
HETATM 18 C C10 FMN . . . F 5 146.893 108.863 95.983 1 32.94 ? C10 FMN 2101 G 1 
HETATM 19 C C1' FMN . . . F 5 147.857 107.073 94.597 1 35.28 ? C1' FMN 2101 G 1 
HETATM 20 C C2' FMN . . . F 5 148.219 107.783 93.283 1 34.01 ? C2' FMN 2101 G 1 
HETATM 21 O O2' FMN . . . F 5 147.182 108.707 92.969 1 37.96 ? O2' FMN 2101 G 1 
HETATM 22 C C3' FMN . . . F 5 148.305 106.801 92.155 1 34.61 ? C3' FMN 2101 G 1 
HETATM 23 O O3' FMN . . . F 5 147.082 106.022 92.115 1 34.09 ? O3' FMN 2101 G 1 
HETATM 24 C C4' FMN . . . F 5 149.538 105.921 92.363 1 34.74 ? C4' FMN 2101 G 1 
HETATM 25 O O4' FMN . . . F 5 150.638 106.745 92.717 1 34.04 ? O4' FMN 2101 G 1 
HETATM 26 C C5' FMN . . . F 5 149.89 105.159 91.112 1 32 ? C5' FMN 2101 G 1 
HETATM 27 O O5' FMN . . . F 5 150.838 104.188 91.456 1 29.84 ? O5' FMN 2101 G 1 
HETATM 28 P P FMN . . . F 5 152.369 104.452 91.156 1 28.77 ? P FMN 2101 G 1 
HETATM 29 O O1P FMN . . . F 5 153.081 103.111 91.427 1 27.29 ? O1P FMN 2101 G 1 
HETATM 30 O O2P FMN . . . F 5 152.369 104.853 89.69 1 33.7 ? O2P FMN 2101 G 1 
HETATM 31 O O3P FMN . . . F 5 152.661 105.604 92.066 1 27.17 ? O3P FMN 2101 G 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    97 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           31 
#