data_8PRV
#
_model_server_result.job_id            Sk1GkhEj1kWpSnZL2b8wIw 
_model_server_result.datetime_utc      '2024-12-26 16:07:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8prv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":2102}' 
#
_entry.id    8PRV 
#
_exptl.entry_id    8PRV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PRV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PRV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 1246 A CYS 1246 1_555 A SG CYS 1327 A CYS 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
covale ? covale1 B CB SER 180 B SER 180 1_555 E O23 A5S . B A5S 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? 
covale ? covale2 C C HIS 1807 G HIS 1807 1_555 C N J8W 1808 G J8W 1808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 C C J8W 1808 G J8W 1808 1_555 C N LEU 1809 G LEU 1809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 450 n n 
PA O2A NAP sing 451 n n 
PA O5B NAP sing 452 n n 
PA O3 NAP sing 453 n n 
O2A HOA2 NAP sing 454 n n 
O5B C5B NAP sing 455 n n 
C5B C4B NAP sing 456 n n 
C5B H51A NAP sing 457 n n 
C5B H52A NAP sing 458 n n 
C4B O4B NAP sing 459 n n 
C4B C3B NAP sing 460 n n 
C4B H4B NAP sing 461 n n 
O4B C1B NAP sing 462 n n 
C3B O3B NAP sing 463 n n 
C3B C2B NAP sing 464 n n 
C3B H3B NAP sing 465 n n 
O3B HO3A NAP sing 466 n n 
C2B O2B NAP sing 467 n n 
C2B C1B NAP sing 468 n n 
C2B H2B NAP sing 469 n n 
O2B P2B NAP sing 470 n n 
C1B N9A NAP sing 471 n n 
C1B H1B NAP sing 472 n n 
N9A C8A NAP sing 473 n y 
N9A C4A NAP sing 474 n y 
C8A N7A NAP doub 475 n y 
C8A H8A NAP sing 476 n n 
N7A C5A NAP sing 477 n y 
C5A C6A NAP sing 478 n y 
C5A C4A NAP doub 479 n y 
C6A N6A NAP sing 480 n n 
C6A N1A NAP doub 481 n y 
N6A H61A NAP sing 482 n n 
N6A H62A NAP sing 483 n n 
N1A C2A NAP sing 484 n y 
C2A N3A NAP doub 485 n y 
C2A H2A NAP sing 486 n n 
N3A C4A NAP sing 487 n y 
O3 PN NAP sing 488 n n 
PN O1N NAP doub 489 n n 
PN O2N NAP sing 490 n n 
PN O5D NAP sing 491 n n 
O5D C5D NAP sing 492 n n 
C5D C4D NAP sing 493 n n 
C5D H51N NAP sing 494 n n 
C5D H52N NAP sing 495 n n 
C4D O4D NAP sing 496 n n 
C4D C3D NAP sing 497 n n 
C4D H4D NAP sing 498 n n 
O4D C1D NAP sing 499 n n 
C3D O3D NAP sing 500 n n 
C3D C2D NAP sing 501 n n 
C3D H3D NAP sing 502 n n 
O3D HO3N NAP sing 503 n n 
C2D O2D NAP sing 504 n n 
C2D C1D NAP sing 505 n n 
C2D H2D NAP sing 506 n n 
O2D HO2N NAP sing 507 n n 
C1D N1N NAP sing 508 n n 
C1D H1D NAP sing 509 n n 
N1N C2N NAP sing 510 n y 
N1N C6N NAP doub 511 n y 
C2N C3N NAP doub 512 n y 
C2N H2N NAP sing 513 n n 
C3N C7N NAP sing 514 n n 
C3N C4N NAP sing 515 n y 
C7N O7N NAP doub 516 n n 
C7N N7N NAP sing 517 n n 
N7N H71N NAP sing 518 n n 
N7N H72N NAP sing 519 n n 
C4N C5N NAP doub 520 n y 
C4N H4N NAP sing 521 n n 
C5N C6N NAP sing 522 n y 
C5N H5N NAP sing 523 n n 
C6N H6N NAP sing 524 n n 
P2B O1X NAP doub 525 n n 
P2B O2X NAP sing 526 n n 
P2B O3X NAP sing 527 n n 
O2X HOP2 NAP sing 528 n n 
O3X HOP3 NAP sing 529 n n 
#
_atom_sites.entry_id                     8PRV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 NAP A 1 1901 1901 NAP NAP . 
E 4 A5S B 1 1901 180 A5S PKR . 
F 5 FMN G 1 2101 2101 FMN FMN . 
G 3 NAP G 1 2102 2201 NAP NAP . 
H 6 COA G 1 2103 2301 COA COA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . G 3 145 111.178 109.087 1 133.2 ? PA NAP 2102 G 1 
HETATM 2 O O1A NAP . . . G 3 146.193 110.989 109.995 1 118.24 ? O1A NAP 2102 G 1 
HETATM 3 O O2A NAP . . . G 3 143.679 110.589 109.543 1 128.47 ? O2A NAP 2102 G 1 
HETATM 4 O O5B NAP . . . G 3 144.71 112.742 108.73 1 136.79 ? O5B NAP 2102 G 1 
HETATM 5 C C5B NAP . . . G 3 145.434 113.883 109.212 1 134.14 ? C5B NAP 2102 G 1 
HETATM 6 C C4B NAP . . . G 3 144.658 114.535 110.358 1 139.43 ? C4B NAP 2102 G 1 
HETATM 7 O O4B NAP . . . G 3 145.493 115.488 111.019 1 127.39 ? O4B NAP 2102 G 1 
HETATM 8 C C3B NAP . . . G 3 143.387 115.285 109.943 1 147.92 ? C3B NAP 2102 G 1 
HETATM 9 O O3B NAP . . . G 3 142.221 114.443 110.038 1 143.81 ? O3B NAP 2102 G 1 
HETATM 10 C C2B NAP . . . G 3 143.33 116.522 110.854 1 142.94 ? C2B NAP 2102 G 1 
HETATM 11 O O2B NAP . . . G 3 142.271 116.43 111.838 1 155.64 ? O2B NAP 2102 G 1 
HETATM 12 C C1B NAP . . . G 3 144.73 116.605 111.51 1 123.08 ? C1B NAP 2102 G 1 
HETATM 13 N N9A NAP . . . G 3 145.513 117.888 111.302 1 101.17 ? N9A NAP 2102 G 1 
HETATM 14 C C8A NAP . . . G 3 146.778 118.012 110.784 1 82.31 ? C8A NAP 2102 G 1 
HETATM 15 N N7A NAP . . . G 3 147.174 119.315 110.782 1 81.34 ? N7A NAP 2102 G 1 
HETATM 16 C C5A NAP . . . G 3 146.165 120.068 111.305 1 90.3 ? C5A NAP 2102 G 1 
HETATM 17 C C6A NAP . . . G 3 145.899 121.531 111.593 1 99.66 ? C6A NAP 2102 G 1 
HETATM 18 N N6A NAP . . . G 3 146.822 122.499 111.321 1 100.37 ? N6A NAP 2102 G 1 
HETATM 19 N N1A NAP . . . G 3 144.696 121.872 112.157 1 97.8 ? N1A NAP 2102 G 1 
HETATM 20 C C2A NAP . . . G 3 143.742 120.942 112.45 1 99.69 ? C2A NAP 2102 G 1 
HETATM 21 N N3A NAP . . . G 3 143.919 119.612 112.214 1 93.85 ? N3A NAP 2102 G 1 
HETATM 22 C C4A NAP . . . G 3 145.078 119.117 111.659 1 91.77 ? C4A NAP 2102 G 1 
HETATM 23 O O3 NAP . . . G 3 145.359 110.563 107.617 1 142.05 ? O3 NAP 2102 G 1 
HETATM 24 P PN NAP . . . G 3 146.56 110.956 106.573 1 143.73 ? PN NAP 2102 G 1 
HETATM 25 O O1N NAP . . . G 3 147.104 109.616 106.106 1 136.1 ? O1N NAP 2102 G 1 
HETATM 26 O O2N NAP . . . G 3 147.534 111.958 107.168 1 119.79 ? O2N NAP 2102 G 1 
HETATM 27 O O5D NAP . . . G 3 145.857 111.657 105.269 1 143.93 ? O5D NAP 2102 G 1 
HETATM 28 C C5D NAP . . . G 3 144.538 112.243 105.16 1 145.8 ? C5D NAP 2102 G 1 
HETATM 29 C C4D NAP . . . G 3 143.638 111.537 104.117 1 145.09 ? C4D NAP 2102 G 1 
HETATM 30 O O4D NAP . . . G 3 144.355 111.312 102.89 1 142.66 ? O4D NAP 2102 G 1 
HETATM 31 C C3D NAP . . . G 3 143.094 110.163 104.563 1 144.49 ? C3D NAP 2102 G 1 
HETATM 32 O O3D NAP . . . G 3 141.654 110.107 104.515 1 127.75 ? O3D NAP 2102 G 1 
HETATM 33 C C2D NAP . . . G 3 143.744 109.137 103.63 1 139.96 ? C2D NAP 2102 G 1 
HETATM 34 O O2D NAP . . . G 3 142.884 108.025 103.315 1 132.62 ? O2D NAP 2102 G 1 
HETATM 35 C C1D NAP . . . G 3 144.124 109.974 102.404 1 135.28 ? C1D NAP 2102 G 1 
HETATM 36 N N1N NAP . . . G 3 145.262 109.42 101.633 1 125.11 ? N1N NAP 2102 G 1 
HETATM 37 C C2N NAP . . . G 3 144.972 108.579 100.613 1 125.78 ? C2N NAP 2102 G 1 
HETATM 38 C C3N NAP . . . G 3 145.979 108.003 99.808 1 126.94 ? C3N NAP 2102 G 1 
HETATM 39 C C7N NAP . . . G 3 145.642 107.054 98.668 1 112.64 ? C7N NAP 2102 G 1 
HETATM 40 O O7N NAP . . . G 3 146.559 106.48 98.093 1 113.08 ? O7N NAP 2102 G 1 
HETATM 41 N N7N NAP . . . G 3 144.381 106.801 98.28 1 100.42 ? N7N NAP 2102 G 1 
HETATM 42 C C4N NAP . . . G 3 147.321 108.324 100.101 1 122.27 ? C4N NAP 2102 G 1 
HETATM 43 C C5N NAP . . . G 3 147.599 109.198 101.155 1 118.33 ? C5N NAP 2102 G 1 
HETATM 44 C C6N NAP . . . G 3 146.55 109.737 101.912 1 119.95 ? C6N NAP 2102 G 1 
HETATM 45 P P2B NAP . . . G 3 140.727 116.92 111.643 1 167.26 ? P2B NAP 2102 G 1 
HETATM 46 O O1X NAP . . . G 3 140.295 116.361 110.303 1 158.27 ? O1X NAP 2102 G 1 
HETATM 47 O O2X NAP . . . G 3 140 116.301 112.818 1 150.62 ? O2X NAP 2102 G 1 
HETATM 48 O O3X NAP . . . G 3 140.79 118.433 111.697 1 160.6 ? O3X NAP 2102 G 1 
#
_model_server_stats.io_time_ms              101 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#