data_8PRV
#
_model_server_result.job_id            fLwdlXyLtW3cL_CeMjVD3A 
_model_server_result.datetime_utc      '2024-12-26 16:59:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8prv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":2103}' 
#
_entry.id    8PRV 
#
_exptl.entry_id    8PRV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              767.534 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COENZYME A' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PRV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PRV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 1246 A CYS 1246 1_555 A SG CYS 1327 A CYS 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
covale ? covale1 B CB SER 180 B SER 180 1_555 E O23 A5S . B A5S 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? 
covale ? covale2 C C HIS 1807 G HIS 1807 1_555 C N J8W 1808 G J8W 1808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 C C J8W 1808 G J8W 1808 1_555 C N LEU 1809 G LEU 1809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C21 H36 N7 O16 P3 S' 
_chem_comp.formula_weight    767.534 
_chem_comp.id                COA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1A C2A COA sing 124 n y 
N1A C6A COA doub 125 n y 
C2A N3A COA doub 126 n y 
C2A H2A COA sing 127 n n 
N3A C4A COA sing 128 n y 
C4A C5A COA doub 129 n y 
C4A N9A COA sing 130 n y 
C5A C6A COA sing 131 n y 
C5A N7A COA sing 132 n y 
C6A N6A COA sing 133 n n 
N6A H61A COA sing 134 n n 
N6A H62A COA sing 135 n n 
N7A C8A COA doub 136 n y 
C8A N9A COA sing 137 n y 
C8A H8A COA sing 138 n n 
N9A C1B COA sing 139 n n 
C1B C2B COA sing 140 n n 
C1B O4B COA sing 141 n n 
C1B H1B COA sing 142 n n 
C2B O2B COA sing 143 n n 
C2B C3B COA sing 144 n n 
C2B H2B COA sing 145 n n 
O2B HO2A COA sing 146 n n 
C3B O3B COA sing 147 n n 
C3B C4B COA sing 148 n n 
C3B H3B COA sing 149 n n 
O3B P3B COA sing 150 n n 
P3B O7A COA doub 151 n n 
P3B O8A COA sing 152 n n 
P3B O9A COA sing 153 n n 
O8A HOA8 COA sing 154 n n 
O9A HOA9 COA sing 155 n n 
C4B O4B COA sing 156 n n 
C4B C5B COA sing 157 n n 
C4B H4B COA sing 158 n n 
C5B O5B COA sing 159 n n 
C5B H51A COA sing 160 n n 
C5B H52A COA sing 161 n n 
O5B P1A COA sing 162 n n 
P1A O1A COA doub 163 n n 
P1A O2A COA sing 164 n n 
P1A O3A COA sing 165 n n 
O2A HOA2 COA sing 166 n n 
O3A P2A COA sing 167 n n 
P2A O4A COA doub 168 n n 
P2A O5A COA sing 169 n n 
P2A O6A COA sing 170 n n 
O5A HOA5 COA sing 171 n n 
O6A CCP COA sing 172 n n 
CBP CCP COA sing 173 n n 
CBP CDP COA sing 174 n n 
CBP CEP COA sing 175 n n 
CBP CAP COA sing 176 n n 
CCP H121 COA sing 177 n n 
CCP H122 COA sing 178 n n 
CDP H131 COA sing 179 n n 
CDP H132 COA sing 180 n n 
CDP H133 COA sing 181 n n 
CEP H141 COA sing 182 n n 
CEP H142 COA sing 183 n n 
CEP H143 COA sing 184 n n 
CAP OAP COA sing 185 n n 
CAP C9P COA sing 186 n n 
CAP H10 COA sing 187 n n 
OAP HO1 COA sing 188 n n 
C9P O9P COA doub 189 n n 
C9P N8P COA sing 190 n n 
N8P C7P COA sing 191 n n 
N8P HN8 COA sing 192 n n 
C7P C6P COA sing 193 n n 
C7P H71 COA sing 194 n n 
C7P H72 COA sing 195 n n 
C6P C5P COA sing 196 n n 
C6P H61 COA sing 197 n n 
C6P H62 COA sing 198 n n 
C5P O5P COA doub 199 n n 
C5P N4P COA sing 200 n n 
N4P C3P COA sing 201 n n 
N4P HN4 COA sing 202 n n 
C3P C2P COA sing 203 n n 
C3P H31 COA sing 204 n n 
C3P H32 COA sing 205 n n 
C2P S1P COA sing 206 n n 
C2P H21 COA sing 207 n n 
C2P H22 COA sing 208 n n 
S1P HS1 COA sing 209 n n 
#
_atom_sites.entry_id                     8PRV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 NAP A 1 1901 1901 NAP NAP . 
E 4 A5S B 1 1901 180 A5S PKR . 
F 5 FMN G 1 2101 2101 FMN FMN . 
G 3 NAP G 1 2102 2201 NAP NAP . 
H 6 COA G 1 2103 2301 COA COA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1A COA . . . H 6 65.844 178.551 119.845 1 174.02 ? N1A COA 2103 G 1 
HETATM 2 C C2A COA . . . H 6 65.105 177.572 120.389 1 180.07 ? C2A COA 2103 G 1 
HETATM 3 N N3A COA . . . H 6 65.334 176.26 120.409 1 185.62 ? N3A COA 2103 G 1 
HETATM 4 C C4A COA . . . H 6 66.482 175.965 119.773 1 192.64 ? C4A COA 2103 G 1 
HETATM 5 C C5A COA . . . H 6 67.343 176.856 119.162 1 181.63 ? C5A COA 2103 G 1 
HETATM 6 C C6A COA . . . H 6 66.992 178.221 119.202 1 169.14 ? C6A COA 2103 G 1 
HETATM 7 N N6A COA . . . H 6 67.738 179.192 118.683 1 157.42 ? N6A COA 2103 G 1 
HETATM 8 N N7A COA . . . H 6 68.424 176.179 118.612 1 187.13 ? N7A COA 2103 G 1 
HETATM 9 C C8A COA . . . H 6 68.206 174.915 118.899 1 200.88 ? C8A COA 2103 G 1 
HETATM 10 N N9A COA . . . H 6 67.03 174.722 119.597 1 205.71 ? N9A COA 2103 G 1 
HETATM 11 C C1B COA . . . H 6 66.466 173.46 120.116 1 215.56 ? C1B COA 2103 G 1 
HETATM 12 C C2B COA . . . H 6 65.641 172.638 119.125 1 219.65 ? C2B COA 2103 G 1 
HETATM 13 O O2B COA . . . H 6 64.48 172.135 119.753 1 210.71 ? O2B COA 2103 G 1 
HETATM 14 C C3B COA . . . H 6 66.607 171.531 118.68 1 227.52 ? C3B COA 2103 G 1 
HETATM 15 O O3B COA . . . H 6 65.9 170.317 118.361 1 219.65 ? O3B COA 2103 G 1 
HETATM 16 P P3B COA . . . H 6 66.134 169.601 116.907 1 203.26 ? P3B COA 2103 G 1 
HETATM 17 O O7A COA . . . H 6 67.354 168.708 117.051 1 193.21 ? O7A COA 2103 G 1 
HETATM 18 O O8A COA . . . H 6 66.334 170.66 115.835 1 185.26 ? O8A COA 2103 G 1 
HETATM 19 O O9A COA . . . H 6 64.874 168.79 116.661 1 188.82 ? O9A COA 2103 G 1 
HETATM 20 C C4B COA . . . H 6 67.509 171.356 119.902 1 227.11 ? C4B COA 2103 G 1 
HETATM 21 O O4B COA . . . H 6 67.532 172.649 120.559 1 220.69 ? O4B COA 2103 G 1 
HETATM 22 C C5B COA . . . H 6 68.931 170.924 119.617 1 229.92 ? C5B COA 2103 G 1 
HETATM 23 O O5B COA . . . H 6 69.471 171.69 118.493 1 222.75 ? O5B COA 2103 G 1 
HETATM 24 P P1A COA . . . H 6 71.037 171.716 118.115 1 202.12 ? P1A COA 2103 G 1 
HETATM 25 O O1A COA . . . H 6 71.363 173.014 117.45 1 195.05 ? O1A COA 2103 G 1 
HETATM 26 O O2A COA . . . H 6 71.399 170.459 117.395 1 193.09 ? O2A COA 2103 G 1 
HETATM 27 O O3A COA . . . H 6 71.708 171.698 119.574 1 197.89 ? O3A COA 2103 G 1 
HETATM 28 P P2A COA . . . H 6 73.218 171.685 120.11 1 194.73 ? P2A COA 2103 G 1 
HETATM 29 O O4A COA . . . H 6 73.236 171.128 121.497 1 187.03 ? O4A COA 2103 G 1 
HETATM 30 O O5A COA . . . H 6 74.084 171.037 119.079 1 188.35 ? O5A COA 2103 G 1 
HETATM 31 O O6A COA . . . H 6 73.537 173.265 120.141 1 186.32 ? O6A COA 2103 G 1 
HETATM 32 C CBP COA . . . H 6 73.672 175.514 121.158 1 153.03 ? CBP COA 2103 G 1 
HETATM 33 C CCP COA . . . H 6 73.256 174.047 121.345 1 168.97 ? CCP COA 2103 G 1 
HETATM 34 C CDP COA . . . H 6 73.742 176.149 122.56 1 151 ? CDP COA 2103 G 1 
HETATM 35 C CEP COA . . . H 6 72.581 176.241 120.344 1 143.66 ? CEP COA 2103 G 1 
HETATM 36 C CAP COA . . . H 6 75.051 175.608 120.448 1 135.96 ? CAP COA 2103 G 1 
HETATM 37 O OAP COA . . . H 6 74.879 175.739 119.039 1 119.77 ? OAP COA 2103 G 1 
HETATM 38 C C9P COA . . . H 6 76.032 176.683 120.918 1 129.67 ? C9P COA 2103 G 1 
HETATM 39 O O9P COA . . . H 6 77.106 176.333 121.408 1 120.92 ? O9P COA 2103 G 1 
HETATM 40 N N8P COA . . . H 6 75.676 177.959 120.791 1 125.27 ? N8P COA 2103 G 1 
HETATM 41 C C7P COA . . . H 6 76.516 179.089 121.178 1 110.69 ? C7P COA 2103 G 1 
HETATM 42 C C6P COA . . . H 6 77.757 179.224 120.327 1 104.58 ? C6P COA 2103 G 1 
HETATM 43 C C5P COA . . . H 6 78.632 180.382 120.76 1 106.96 ? C5P COA 2103 G 1 
HETATM 44 O O5P COA . . . H 6 78.628 181.44 120.133 1 96.09 ? O5P COA 2103 G 1 
HETATM 45 N N4P COA . . . H 6 79.401 180.189 121.842 1 112.19 ? N4P COA 2103 G 1 
HETATM 46 C C3P COA . . . H 6 80.378 181.147 122.341 1 118.3 ? C3P COA 2103 G 1 
HETATM 47 C C2P COA . . . H 6 79.744 182.279 123.123 1 116.64 ? C2P COA 2103 G 1 
HETATM 48 S S1P COA . . . H 6 80.614 183.845 122.85 1 119.71 ? S1P COA 2103 G 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    57 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#