data_8PS1
#
_model_server_result.job_id            hJ8cJSyFfw9AlhhVZyqwcw 
_model_server_result.datetime_utc      '2024-12-26 11:40:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ps1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":2101}' 
#
_entry.id    8PS1 
#
_exptl.entry_id    8PS1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PS1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PS1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C HIS 1807 G HIS 1807 1_555 C N J8W 1808 G J8W 1808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 C C J8W 1808 G J8W 1808 1_555 C N LEU 1809 G LEU 1809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 169 n n 
N1 C10 FMN doub 170 n n 
C2 O2 FMN doub 171 n n 
C2 N3 FMN sing 172 n n 
N3 C4 FMN sing 173 n n 
N3 HN3 FMN sing 174 n n 
C4 O4 FMN doub 175 n n 
C4 C4A FMN sing 176 n n 
C4A N5 FMN doub 177 n n 
C4A C10 FMN sing 178 n n 
N5 C5A FMN sing 179 n n 
C5A C6 FMN doub 180 n y 
C5A C9A FMN sing 181 n y 
C6 C7 FMN sing 182 n y 
C6 H6 FMN sing 183 n n 
C7 C7M FMN sing 184 n n 
C7 C8 FMN doub 185 n y 
C7M HM71 FMN sing 186 n n 
C7M HM72 FMN sing 187 n n 
C7M HM73 FMN sing 188 n n 
C8 C8M FMN sing 189 n n 
C8 C9 FMN sing 190 n y 
C8M HM81 FMN sing 191 n n 
C8M HM82 FMN sing 192 n n 
C8M HM83 FMN sing 193 n n 
C9 C9A FMN doub 194 n y 
C9 H9 FMN sing 195 n n 
C9A N10 FMN sing 196 n n 
N10 C10 FMN sing 197 n n 
N10 C1' FMN sing 198 n n 
C1' C2' FMN sing 199 n n 
C1' "H1'1" FMN sing 200 n n 
C1' "H1'2" FMN sing 201 n n 
C2' O2' FMN sing 202 n n 
C2' C3' FMN sing 203 n n 
C2' H2' FMN sing 204 n n 
O2' HO2' FMN sing 205 n n 
C3' O3' FMN sing 206 n n 
C3' C4' FMN sing 207 n n 
C3' H3' FMN sing 208 n n 
O3' HO3' FMN sing 209 n n 
C4' O4' FMN sing 210 n n 
C4' C5' FMN sing 211 n n 
C4' H4' FMN sing 212 n n 
O4' HO4' FMN sing 213 n n 
C5' O5' FMN sing 214 n n 
C5' "H5'1" FMN sing 215 n n 
C5' "H5'2" FMN sing 216 n n 
O5' P FMN sing 217 n n 
P O1P FMN doub 218 n n 
P O2P FMN sing 219 n n 
P O3P FMN sing 220 n n 
O2P HOP2 FMN sing 221 n n 
O3P HOP3 FMN sing 222 n n 
#
_atom_sites.entry_id                     8PS1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 NAP A 1 1901 1901 NAP NAP . 
E 4 FMN G 1 2101 2101 FMN FMN . 
F 5 COA G 1 2102 2301 COA COA . 
G 3 NAP G 1 2103 2401 NAP NAP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . E 4 145.979 108.845 95.522 1 24.58 ? N1 FMN 2101 G 1 
HETATM 2 C C2 FMN . . . E 4 144.876 109.539 95.852 1 27.48 ? C2 FMN 2101 G 1 
HETATM 3 O O2 FMN . . . E 4 143.765 109.221 95.283 1 26.96 ? O2 FMN 2101 G 1 
HETATM 4 N N3 FMN . . . E 4 144.971 110.531 96.801 1 26.96 ? N3 FMN 2101 G 1 
HETATM 5 C C4 FMN . . . E 4 146.129 110.851 97.459 1 25.46 ? C4 FMN 2101 G 1 
HETATM 6 O O4 FMN . . . E 4 146.211 111.756 98.335 1 26.36 ? O4 FMN 2101 G 1 
HETATM 7 C C4A FMN . . . E 4 147.331 110.097 97.1 1 22.6 ? C4A FMN 2101 G 1 
HETATM 8 N N5 FMN . . . E 4 148.504 110.347 97.67 1 22.48 ? N5 FMN 2101 G 1 
HETATM 9 C C5A FMN . . . E 4 149.591 109.64 97.296 1 22.97 ? C5A FMN 2101 G 1 
HETATM 10 C C6 FMN . . . E 4 150.82 109.93 97.825 1 22.07 ? C6 FMN 2101 G 1 
HETATM 11 C C7 FMN . . . E 4 151.933 109.241 97.402 1 21.92 ? C7 FMN 2101 G 1 
HETATM 12 C C7M FMN . . . E 4 153.265 109.543 97.961 1 22.57 ? C7M FMN 2101 G 1 
HETATM 13 C C8 FMN . . . E 4 151.837 108.204 96.408 1 22.74 ? C8 FMN 2101 G 1 
HETATM 14 C C8M FMN . . . E 4 153.02 107.448 95.934 1 23.5 ? C8M FMN 2101 G 1 
HETATM 15 C C9 FMN . . . E 4 150.633 107.901 95.861 1 23.69 ? C9 FMN 2101 G 1 
HETATM 16 C C9A FMN . . . E 4 149.507 108.579 96.268 1 24.13 ? C9A FMN 2101 G 1 
HETATM 17 N N10 FMN . . . E 4 148.282 108.309 95.672 1 24.29 ? N10 FMN 2101 G 1 
HETATM 18 C C10 FMN . . . E 4 147.174 109.07 96.071 1 23.27 ? C10 FMN 2101 G 1 
HETATM 19 C C1' FMN . . . E 4 148.174 107.27 94.653 1 23.65 ? C1' FMN 2101 G 1 
HETATM 20 C C2' FMN . . . E 4 148.526 107.865 93.3 1 23.35 ? C2' FMN 2101 G 1 
HETATM 21 O O2' FMN . . . E 4 147.536 108.878 93.03 1 22.95 ? O2' FMN 2101 G 1 
HETATM 22 C C3' FMN . . . E 4 148.564 106.724 92.254 1 22.44 ? C3' FMN 2101 G 1 
HETATM 23 O O3' FMN . . . E 4 147.429 105.821 92.418 1 22.11 ? O3' FMN 2101 G 1 
HETATM 24 C C4' FMN . . . E 4 149.892 105.992 92.413 1 21.74 ? C4' FMN 2101 G 1 
HETATM 25 O O4' FMN . . . E 4 150.864 106.954 92.812 1 22.26 ? O4' FMN 2101 G 1 
HETATM 26 C C5' FMN . . . E 4 150.367 105.373 91.133 1 21.27 ? C5' FMN 2101 G 1 
HETATM 27 O O5' FMN . . . E 4 151.338 104.37 91.388 1 21.44 ? O5' FMN 2101 G 1 
HETATM 28 P P FMN . . . E 4 152.911 104.581 91.248 1 20.96 ? P FMN 2101 G 1 
HETATM 29 O O1P FMN . . . E 4 153.485 103.198 91.206 1 22.9 ? O1P FMN 2101 G 1 
HETATM 30 O O2P FMN . . . E 4 153.386 105.389 90.056 1 27.04 ? O2P FMN 2101 G 1 
HETATM 31 O O3P FMN . . . E 4 153.027 105.355 92.507 1 23.22 ? O3P FMN 2101 G 1 
#
_model_server_stats.io_time_ms              38 
_model_server_stats.parse_time_ms           56 
_model_server_stats.create_model_time_ms    100 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           31 
#