data_8PS1
#
_model_server_result.job_id            pGjUDIP2t3AKqEmawc03Rw 
_model_server_result.datetime_utc      '2024-12-26 11:07:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ps1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":2103}' 
#
_entry.id    8PS1 
#
_exptl.entry_id    8PS1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PS1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PS1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C HIS 1807 G HIS 1807 1_555 C N J8W 1808 G J8W 1808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 C C J8W 1808 G J8W 1808 1_555 C N LEU 1809 G LEU 1809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 396 n n 
PA O2A NAP sing 397 n n 
PA O5B NAP sing 398 n n 
PA O3 NAP sing 399 n n 
O2A HOA2 NAP sing 400 n n 
O5B C5B NAP sing 401 n n 
C5B C4B NAP sing 402 n n 
C5B H51A NAP sing 403 n n 
C5B H52A NAP sing 404 n n 
C4B O4B NAP sing 405 n n 
C4B C3B NAP sing 406 n n 
C4B H4B NAP sing 407 n n 
O4B C1B NAP sing 408 n n 
C3B O3B NAP sing 409 n n 
C3B C2B NAP sing 410 n n 
C3B H3B NAP sing 411 n n 
O3B HO3A NAP sing 412 n n 
C2B O2B NAP sing 413 n n 
C2B C1B NAP sing 414 n n 
C2B H2B NAP sing 415 n n 
O2B P2B NAP sing 416 n n 
C1B N9A NAP sing 417 n n 
C1B H1B NAP sing 418 n n 
N9A C8A NAP sing 419 n y 
N9A C4A NAP sing 420 n y 
C8A N7A NAP doub 421 n y 
C8A H8A NAP sing 422 n n 
N7A C5A NAP sing 423 n y 
C5A C6A NAP sing 424 n y 
C5A C4A NAP doub 425 n y 
C6A N6A NAP sing 426 n n 
C6A N1A NAP doub 427 n y 
N6A H61A NAP sing 428 n n 
N6A H62A NAP sing 429 n n 
N1A C2A NAP sing 430 n y 
C2A N3A NAP doub 431 n y 
C2A H2A NAP sing 432 n n 
N3A C4A NAP sing 433 n y 
O3 PN NAP sing 434 n n 
PN O1N NAP doub 435 n n 
PN O2N NAP sing 436 n n 
PN O5D NAP sing 437 n n 
O5D C5D NAP sing 438 n n 
C5D C4D NAP sing 439 n n 
C5D H51N NAP sing 440 n n 
C5D H52N NAP sing 441 n n 
C4D O4D NAP sing 442 n n 
C4D C3D NAP sing 443 n n 
C4D H4D NAP sing 444 n n 
O4D C1D NAP sing 445 n n 
C3D O3D NAP sing 446 n n 
C3D C2D NAP sing 447 n n 
C3D H3D NAP sing 448 n n 
O3D HO3N NAP sing 449 n n 
C2D O2D NAP sing 450 n n 
C2D C1D NAP sing 451 n n 
C2D H2D NAP sing 452 n n 
O2D HO2N NAP sing 453 n n 
C1D N1N NAP sing 454 n n 
C1D H1D NAP sing 455 n n 
N1N C2N NAP sing 456 n y 
N1N C6N NAP doub 457 n y 
C2N C3N NAP doub 458 n y 
C2N H2N NAP sing 459 n n 
C3N C7N NAP sing 460 n n 
C3N C4N NAP sing 461 n y 
C7N O7N NAP doub 462 n n 
C7N N7N NAP sing 463 n n 
N7N H71N NAP sing 464 n n 
N7N H72N NAP sing 465 n n 
C4N C5N NAP doub 466 n y 
C4N H4N NAP sing 467 n n 
C5N C6N NAP sing 468 n y 
C5N H5N NAP sing 469 n n 
C6N H6N NAP sing 470 n n 
P2B O1X NAP doub 471 n n 
P2B O2X NAP sing 472 n n 
P2B O3X NAP sing 473 n n 
O2X HOP2 NAP sing 474 n n 
O3X HOP3 NAP sing 475 n n 
#
_atom_sites.entry_id                     8PS1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 NAP A 1 1901 1901 NAP NAP . 
E 4 FMN G 1 2101 2101 FMN FMN . 
F 5 COA G 1 2102 2301 COA COA . 
G 3 NAP G 1 2103 2401 NAP NAP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . G 3 145.676 111.227 109.19 1 154.2 ? PA NAP 2103 G 1 
HETATM 2 O O1A NAP . . . G 3 146.971 111.209 109.961 1 150.37 ? O1A NAP 2103 G 1 
HETATM 3 O O2A NAP . . . G 3 144.511 110.402 109.7 1 145.34 ? O2A NAP 2103 G 1 
HETATM 4 O O5B NAP . . . G 3 145.155 112.737 108.91 1 147.99 ? O5B NAP 2103 G 1 
HETATM 5 C C5B NAP . . . G 3 145.727 113.94 109.436 1 138.56 ? C5B NAP 2103 G 1 
HETATM 6 C C4B NAP . . . G 3 144.794 114.519 110.507 1 141.68 ? C4B NAP 2103 G 1 
HETATM 7 O O4B NAP . . . G 3 145.552 115.415 111.327 1 125.71 ? O4B NAP 2103 G 1 
HETATM 8 C C3B NAP . . . G 3 143.574 115.301 109.991 1 140.27 ? C3B NAP 2103 G 1 
HETATM 9 O O3B NAP . . . G 3 142.359 114.522 110.018 1 122.36 ? O3B NAP 2103 G 1 
HETATM 10 C C2B NAP . . . G 3 143.505 116.55 110.879 1 136.68 ? C2B NAP 2103 G 1 
HETATM 11 O O2B NAP . . . G 3 142.469 116.427 111.867 1 140.6 ? O2B NAP 2103 G 1 
HETATM 12 C C1B NAP . . . G 3 144.863 116.649 111.589 1 116.62 ? C1B NAP 2103 G 1 
HETATM 13 N N9A NAP . . . G 3 145.764 117.807 111.243 1 95.79 ? N9A NAP 2103 G 1 
HETATM 14 C C8A NAP . . . G 3 146.979 117.683 110.636 1 90.65 ? C8A NAP 2103 G 1 
HETATM 15 N N7A NAP . . . G 3 147.604 118.887 110.499 1 89.53 ? N7A NAP 2103 G 1 
HETATM 16 C C5A NAP . . . G 3 146.79 119.819 111.035 1 88.5 ? C5A NAP 2103 G 1 
HETATM 17 C C6A NAP . . . G 3 146.843 121.301 111.205 1 93.69 ? C6A NAP 2103 G 1 
HETATM 18 N N6A NAP . . . G 3 147.929 121.976 110.746 1 90.93 ? N6A NAP 2103 G 1 
HETATM 19 N N1A NAP . . . G 3 145.774 121.921 111.821 1 97.19 ? N1A NAP 2103 G 1 
HETATM 20 C C2A NAP . . . G 3 144.681 121.227 112.269 1 95.02 ? C2A NAP 2103 G 1 
HETATM 21 N N3A NAP . . . G 3 144.58 119.87 112.138 1 91.11 ? N3A NAP 2103 G 1 
HETATM 22 C C4A NAP . . . G 3 145.572 119.115 111.539 1 88.67 ? C4A NAP 2103 G 1 
HETATM 23 O O3 NAP . . . G 3 146.01 110.742 107.682 1 166.31 ? O3 NAP 2103 G 1 
HETATM 24 P PN NAP . . . G 3 147.292 111.194 106.791 1 162.81 ? PN NAP 2103 G 1 
HETATM 25 O O1N NAP . . . G 3 148.166 109.961 106.672 1 143.83 ? O1N NAP 2103 G 1 
HETATM 26 O O2N NAP . . . G 3 147.884 112.491 107.306 1 152.05 ? O2N NAP 2103 G 1 
HETATM 27 O O5D NAP . . . G 3 146.598 111.489 105.348 1 157.21 ? O5D NAP 2103 G 1 
HETATM 28 C C5D NAP . . . G 3 145.596 112.502 105.117 1 153.01 ? C5D NAP 2103 G 1 
HETATM 29 C C4D NAP . . . G 3 144.412 111.999 104.261 1 150.4 ? C4D NAP 2103 G 1 
HETATM 30 O O4D NAP . . . G 3 144.863 111.723 102.928 1 141.65 ? O4D NAP 2103 G 1 
HETATM 31 C C3D NAP . . . G 3 143.744 110.71 104.774 1 150.14 ? C3D NAP 2103 G 1 
HETATM 32 O O3D NAP . . . G 3 142.306 110.83 104.791 1 134.6 ? O3D NAP 2103 G 1 
HETATM 33 C C2D NAP . . . G 3 144.25 109.598 103.844 1 139.39 ? C2D NAP 2103 G 1 
HETATM 34 O O2D NAP . . . G 3 143.311 108.519 103.644 1 115.38 ? O2D NAP 2103 G 1 
HETATM 35 C C1D NAP . . . G 3 144.603 110.355 102.555 1 136.14 ? C1D NAP 2103 G 1 
HETATM 36 N N1N NAP . . . G 3 145.737 109.777 101.791 1 123.48 ? N1N NAP 2103 G 1 
HETATM 37 C C2N NAP . . . G 3 145.452 108.931 100.771 1 124.96 ? C2N NAP 2103 G 1 
HETATM 38 C C3N NAP . . . G 3 146.459 108.34 99.984 1 116.17 ? C3N NAP 2103 G 1 
HETATM 39 C C7N NAP . . . G 3 146.134 107.392 98.839 1 103.64 ? C7N NAP 2103 G 1 
HETATM 40 O O7N NAP . . . G 3 147.072 106.817 98.298 1 95.64 ? O7N NAP 2103 G 1 
HETATM 41 N N7N NAP . . . G 3 144.871 107.173 98.404 1 91.5 ? N7N NAP 2103 G 1 
HETATM 42 C C4N NAP . . . G 3 147.793 108.657 100.293 1 114.41 ? C4N NAP 2103 G 1 
HETATM 43 C C5N NAP . . . G 3 148.069 109.531 101.344 1 105.08 ? C5N NAP 2103 G 1 
HETATM 44 C C6N NAP . . . G 3 147.022 110.085 102.081 1 108.34 ? C6N NAP 2103 G 1 
HETATM 45 P P2B NAP . . . G 3 141.112 117.301 111.91 1 144.44 ? P2B NAP 2103 G 1 
HETATM 46 O O1X NAP . . . G 3 140.305 116.762 110.746 1 136.86 ? O1X NAP 2103 G 1 
HETATM 47 O O2X NAP . . . G 3 140.558 116.965 113.282 1 129.89 ? O2X NAP 2103 G 1 
HETATM 48 O O3X NAP . . . G 3 141.563 118.741 111.75 1 133.83 ? O3X NAP 2103 G 1 
#
_model_server_stats.io_time_ms              132 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           48 
#