data_8PS2
#
_model_server_result.job_id            9f6hWIxZz0KtI2JRbOlRwQ 
_model_server_result.datetime_utc      '2024-12-26 15:45:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ps2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1901}' 
#
_entry.id    8PS2 
#
_exptl.entry_id    8PS2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              426.422 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (~{E})-but-2-enethioate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PS2 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PS2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            CB 
_struct_conn.ptnr1_label_comp_id            SER 
_struct_conn.ptnr1_label_seq_id             180 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             SER 
_struct_conn.ptnr1_auth_seq_id              180 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            O23 
_struct_conn.ptnr2_label_comp_id            A3Z 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             A3Z 
_struct_conn.ptnr2_auth_seq_id              1901 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.395 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C15 H27 N2 O8 P S' 
_chem_comp.formula_weight    426.422 
_chem_comp.id                A3Z 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (~{E})-but-2-enethioate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C38 C37 A3Z sing 1 n n 
C38 C39 A3Z sing 2 n n 
C37 N36 A3Z sing 3 n n 
C39 O40 A3Z doub 4 n n 
C39 N41 A3Z sing 5 n n 
N41 C42 A3Z sing 6 n n 
N36 C34 A3Z sing 7 n n 
C42 C43 A3Z sing 8 n n 
O35 C34 A3Z doub 9 n n 
C34 C32 A3Z sing 10 n n 
C43 S44 A3Z sing 11 n n 
O33 C32 A3Z sing 12 n n 
C32 C29 A3Z sing 13 n n 
O5 C1 A3Z doub 14 n n 
S44 C1 A3Z sing 15 n n 
C1 C2 A3Z sing 16 n n 
C28 C29 A3Z sing 17 n n 
C28 O27 A3Z sing 18 n n 
C29 C30 A3Z sing 19 n n 
C29 C31 A3Z sing 20 n n 
O25 P24 A3Z doub 21 n n 
O26 P24 A3Z sing 22 n n 
O27 P24 A3Z sing 23 n n 
C2 C3 A3Z doub 24 e n 
P24 O23 A3Z sing 25 n n 
C3 C4 A3Z sing 26 n n 
C2 H1 A3Z sing 27 n n 
C3 H2 A3Z sing 28 n n 
C4 H3 A3Z sing 29 n n 
C4 H4 A3Z sing 30 n n 
C4 H5 A3Z sing 31 n n 
C28 H6 A3Z sing 32 n n 
C28 H7 A3Z sing 33 n n 
C30 H8 A3Z sing 34 n n 
C30 H9 A3Z sing 35 n n 
C30 H10 A3Z sing 36 n n 
C31 H11 A3Z sing 37 n n 
C31 H12 A3Z sing 38 n n 
C31 H13 A3Z sing 39 n n 
C32 H14 A3Z sing 40 n n 
C37 H15 A3Z sing 41 n n 
C37 H16 A3Z sing 42 n n 
C38 H17 A3Z sing 43 n n 
C38 H18 A3Z sing 44 n n 
C42 H19 A3Z sing 45 n n 
C42 H20 A3Z sing 46 n n 
C43 H21 A3Z sing 47 n n 
C43 H22 A3Z sing 48 n n 
N36 H23 A3Z sing 49 n n 
N41 H24 A3Z sing 50 n n 
O23 H25 A3Z sing 51 n n 
O26 H26 A3Z sing 52 n n 
O33 H27 A3Z sing 53 n n 
#
_atom_sites.entry_id                     8PS2 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 A3Z B 1 1901 180 A3Z PER . 
E 4 FMN G 1 2101 2101 FMN FMN . 
F 5 MLC G 1 2102 2201 MLC MLC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 A3Z . . . D 3 144.075 107.291 101.007 1 75.56 ? C1 A3Z 1901 B 1 
HETATM 2 C C2 A3Z . . . D 3 144.386 108.21 102.175 1 72.98 ? C2 A3Z 1901 B 1 
HETATM 3 C C3 A3Z . . . D 3 145.564 108.21 102.726 1 69.08 ? C3 A3Z 1901 B 1 
HETATM 4 C C4 A3Z . . . D 3 145.82 109.167 103.876 1 74.58 ? C4 A3Z 1901 B 1 
HETATM 5 O O5 A3Z . . . D 3 144.926 106.78 100.35 1 81.49 ? O5 A3Z 1901 B 1 
HETATM 6 C C28 A3Z . . . D 3 137.338 101.261 101.008 1 92.09 ? C28 A3Z 1901 B 1 
HETATM 7 C C29 A3Z . . . D 3 138.801 100.986 101.413 1 96.5 ? C29 A3Z 1901 B 1 
HETATM 8 C C30 A3Z . . . D 3 139.482 102.28 101.905 1 97.62 ? C30 A3Z 1901 B 1 
HETATM 9 C C31 A3Z . . . D 3 138.841 99.992 102.584 1 92.68 ? C31 A3Z 1901 B 1 
HETATM 10 C C32 A3Z . . . D 3 139.603 100.376 100.225 1 96.74 ? C32 A3Z 1901 B 1 
HETATM 11 C C34 A3Z . . . D 3 139.508 101.112 98.884 1 86.53 ? C34 A3Z 1901 B 1 
HETATM 12 C C37 A3Z . . . D 3 140.657 101.431 96.64 1 90.63 ? C37 A3Z 1901 B 1 
HETATM 13 C C38 A3Z . . . D 3 141.648 102.567 96.486 1 89.31 ? C38 A3Z 1901 B 1 
HETATM 14 C C39 A3Z . . . D 3 141.372 103.909 97.118 1 73.31 ? C39 A3Z 1901 B 1 
HETATM 15 C C42 A3Z . . . D 3 142.465 105.947 98.116 1 71.48 ? C42 A3Z 1901 B 1 
HETATM 16 C C43 A3Z . . . D 3 141.961 105.688 99.527 1 72.05 ? C43 A3Z 1901 B 1 
HETATM 17 N N36 A3Z . . . D 3 140.6 100.864 97.971 1 83.91 ? N36 A3Z 1901 B 1 
HETATM 18 N N41 A3Z . . . D 3 142.559 104.659 97.478 1 75.11 ? N41 A3Z 1901 B 1 
HETATM 19 O O23 A3Z . . . D 3 134.938 100.224 103.887 1 102.4 ? O23 A3Z 1901 B 1 
HETATM 20 O O25 A3Z . . . D 3 135.312 99.132 101.623 1 102.49 ? O25 A3Z 1901 B 1 
HETATM 21 O O26 A3Z . . . D 3 134.059 101.272 101.642 1 99 ? O26 A3Z 1901 B 1 
HETATM 22 O O27 A3Z . . . D 3 136.562 101.354 102.161 1 96.19 ? O27 A3Z 1901 B 1 
HETATM 23 O O33 A3Z . . . D 3 139.216 99.049 99.924 1 90.05 ? O33 A3Z 1901 B 1 
HETATM 24 O O35 A3Z . . . D 3 138.606 101.831 98.594 1 89.67 ? O35 A3Z 1901 B 1 
HETATM 25 O O40 A3Z . . . D 3 140.262 104.298 97.266 1 62.63 ? O40 A3Z 1901 B 1 
HETATM 26 P P24 A3Z . . . D 3 135.181 100.487 102.281 1 100.11 ? P24 A3Z 1901 B 1 
HETATM 27 S S44 A3Z . . . D 3 142.312 107.038 100.678 1 69.29 ? S44 A3Z 1901 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#