data_8PS2
#
_model_server_result.job_id            tL4da2zg19gAwGciIbTxlQ 
_model_server_result.datetime_utc      '2024-12-26 15:10:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ps2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2102}' 
#
_entry.id    8PS2 
#
_exptl.entry_id    8PS2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              853.58 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONYL-COENZYME A' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PS2 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PS2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            CB 
_struct_conn.ptnr1_label_comp_id            SER 
_struct_conn.ptnr1_label_seq_id             180 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             SER 
_struct_conn.ptnr1_auth_seq_id              180 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            O23 
_struct_conn.ptnr2_label_comp_id            A3Z 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             A3Z 
_struct_conn.ptnr2_auth_seq_id              1901 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.395 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C24 H38 N7 O19 P3 S' 
_chem_comp.formula_weight    853.58 
_chem_comp.id                MLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONYL-COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 N9 MLC sing 342 n y 
C8 N7 MLC doub 343 n y 
C8 H8 MLC sing 344 n n 
N9 C4 MLC sing 345 n y 
N9 C1' MLC sing 346 n n 
C4 C5 MLC sing 347 n y 
C4 N3 MLC doub 348 n y 
C5 N7 MLC sing 349 n y 
C5 C6 MLC doub 350 n y 
N3 C2 MLC sing 351 n y 
C2 N1 MLC doub 352 n y 
C2 H2 MLC sing 353 n n 
N1 C6 MLC sing 354 n y 
C6 N6 MLC sing 355 n n 
N6 HN61 MLC sing 356 n n 
N6 HN62 MLC sing 357 n n 
C1' C2' MLC sing 358 n n 
C1' O4' MLC sing 359 n n 
C1' H1' MLC sing 360 n n 
C2' O2' MLC sing 361 n n 
C2' C3' MLC sing 362 n n 
C2' H2' MLC sing 363 n n 
O2' HO2 MLC sing 364 n n 
C3' O3' MLC sing 365 n n 
C3' C4' MLC sing 366 n n 
C3' H3' MLC sing 367 n n 
O3' P3 MLC sing 368 n n 
C4' O4' MLC sing 369 n n 
C4' C5' MLC sing 370 n n 
C4' H4' MLC sing 371 n n 
C5' O5' MLC sing 372 n n 
C5' "H5'1" MLC sing 373 n n 
C5' "H5'2" MLC sing 374 n n 
O5' P1 MLC sing 375 n n 
P1 O11 MLC doub 376 n n 
P1 O12 MLC sing 377 n n 
P1 O6 MLC sing 378 n n 
O12 H12 MLC sing 379 n n 
O6 P2 MLC sing 380 n n 
P2 O21 MLC doub 381 n n 
P2 O22 MLC sing 382 n n 
P2 O7 MLC sing 383 n n 
O22 H22 MLC sing 384 n n 
O7 CPB MLC sing 385 n n 
CPB CPA MLC sing 386 n n 
CPB HPB1 MLC sing 387 n n 
CPB HPB2 MLC sing 388 n n 
CPA CP7 MLC sing 389 n n 
CPA CP9 MLC sing 390 n n 
CPA CP8 MLC sing 391 n n 
CP7 OP3 MLC sing 392 n n 
CP7 CP6 MLC sing 393 n n 
CP7 HP7 MLC sing 394 n n 
CP9 HP91 MLC sing 395 n n 
CP9 HP92 MLC sing 396 n n 
CP9 HP93 MLC sing 397 n n 
CP8 HP81 MLC sing 398 n n 
CP8 HP82 MLC sing 399 n n 
CP8 HP83 MLC sing 400 n n 
OP3 HP3 MLC sing 401 n n 
CP6 OP2 MLC doub 402 n n 
CP6 NP2 MLC sing 403 n n 
NP2 CP5 MLC sing 404 n n 
NP2 HP2 MLC sing 405 n n 
CP5 CP4 MLC sing 406 n n 
CP5 HP51 MLC sing 407 n n 
CP5 HP52 MLC sing 408 n n 
CP4 CP3 MLC sing 409 n n 
CP4 HP41 MLC sing 410 n n 
CP4 HP42 MLC sing 411 n n 
CP3 OP1 MLC doub 412 n n 
CP3 NP1 MLC sing 413 n n 
NP1 CP2 MLC sing 414 n n 
NP1 HP1 MLC sing 415 n n 
CP2 CP1 MLC sing 416 n n 
CP2 HP21 MLC sing 417 n n 
CP2 HP22 MLC sing 418 n n 
CP1 S MLC sing 419 n n 
CP1 HP11 MLC sing 420 n n 
CP1 HP12 MLC sing 421 n n 
S CM1 MLC sing 422 n n 
P3 O31 MLC sing 423 n n 
P3 O32 MLC sing 424 n n 
P3 O33 MLC doub 425 n n 
O31 H31 MLC sing 426 n n 
O32 H32 MLC sing 427 n n 
CM1 CM2 MLC sing 428 n n 
CM1 OM2 MLC doub 429 n n 
CM2 CM3 MLC sing 430 n n 
CM2 HM21 MLC sing 431 n n 
CM2 HM22 MLC sing 432 n n 
CM3 OM3 MLC sing 433 n n 
CM3 OM4 MLC doub 434 n n 
OM3 HO3 MLC sing 435 n n 
#
_atom_sites.entry_id                     8PS2 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 A3Z B 1 1901 180 A3Z PER . 
E 4 FMN G 1 2101 2101 FMN FMN . 
F 5 MLC G 1 2102 2201 MLC MLC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 MLC . . . F 5 67.01 174.833 122.586 1 121.79 ? C8 MLC 2102 G 1 
HETATM 2 N N9 MLC . . . F 5 65.924 174.697 123.383 1 125.81 ? N9 MLC 2102 G 1 
HETATM 3 C C4 MLC . . . F 5 65.284 175.856 123.432 1 118.44 ? C4 MLC 2102 G 1 
HETATM 4 C C5 MLC . . . F 5 66.052 176.788 122.59 1 112.8 ? C5 MLC 2102 G 1 
HETATM 5 N N7 MLC . . . F 5 67.099 176.1 122.098 1 116.89 ? N7 MLC 2102 G 1 
HETATM 6 N N3 MLC . . . F 5 64.163 176.292 124.057 1 116.75 ? N3 MLC 2102 G 1 
HETATM 7 C C2 MLC . . . F 5 63.748 177.569 123.914 1 116.11 ? C2 MLC 2102 G 1 
HETATM 8 N N1 MLC . . . F 5 64.401 178.484 123.161 1 99.35 ? N1 MLC 2102 G 1 
HETATM 9 C C6 MLC . . . F 5 65.531 178.168 122.494 1 99.53 ? C6 MLC 2102 G 1 
HETATM 10 N N6 MLC . . . F 5 66.173 179.082 121.754 1 100.88 ? N6 MLC 2102 G 1 
HETATM 11 C C1' MLC . . . F 5 65.463 173.489 124.12 1 136.33 ? C1' MLC 2102 G 1 
HETATM 12 C C2' MLC . . . F 5 64.578 172.628 123.244 1 147.06 ? C2' MLC 2102 G 1 
HETATM 13 O O2' MLC . . . F 5 63.581 171.929 124.006 1 141.58 ? O2' MLC 2102 G 1 
HETATM 14 C C3' MLC . . . F 5 65.589 171.694 122.615 1 146 ? C3' MLC 2102 G 1 
HETATM 15 O O3' MLC . . . F 5 65.008 170.477 122.136 1 143.76 ? O3' MLC 2102 G 1 
HETATM 16 C C4' MLC . . . F 5 66.636 171.484 123.715 1 139.19 ? C4' MLC 2102 G 1 
HETATM 17 O O4' MLC . . . F 5 66.568 172.666 124.524 1 136.64 ? O4' MLC 2102 G 1 
HETATM 18 C C5' MLC . . . F 5 68.074 171.291 123.218 1 143.65 ? C5' MLC 2102 G 1 
HETATM 19 O O5' MLC . . . F 5 68.196 171.508 121.797 1 140.25 ? O5' MLC 2102 G 1 
HETATM 20 P P1 MLC . . . F 5 69.524 171.962 120.982 1 125.46 ? P1 MLC 2102 G 1 
HETATM 21 O O11 MLC . . . F 5 69.133 172.894 119.861 1 127.64 ? O11 MLC 2102 G 1 
HETATM 22 O O12 MLC . . . F 5 70.263 170.689 120.643 1 124.47 ? O12 MLC 2102 G 1 
HETATM 23 O O6 MLC . . . F 5 70.335 172.864 122.026 1 113.85 ? O6 MLC 2102 G 1 
HETATM 24 P P2 MLC . . . F 5 71.553 172.242 122.855 1 114.01 ? P2 MLC 2102 G 1 
HETATM 25 O O21 MLC . . . F 5 71.082 171.543 124.113 1 111.91 ? O21 MLC 2102 G 1 
HETATM 26 O O22 MLC . . . F 5 72.472 171.539 121.889 1 116.96 ? O22 MLC 2102 G 1 
HETATM 27 O O7 MLC . . . F 5 72.325 173.571 123.293 1 108.85 ? O7 MLC 2102 G 1 
HETATM 28 C CPB MLC . . . F 5 71.755 174.581 124.113 1 93.9 ? CPB MLC 2102 G 1 
HETATM 29 C CPA MLC . . . F 5 72.313 175.959 123.747 1 83.87 ? CPA MLC 2102 G 1 
HETATM 30 C CP7 MLC . . . F 5 73.73 175.889 123.084 1 86.74 ? CP7 MLC 2102 G 1 
HETATM 31 C CP9 MLC . . . F 5 71.29 176.626 122.834 1 83.25 ? CP9 MLC 2102 G 1 
HETATM 32 C CP8 MLC . . . F 5 72.286 176.751 125.053 1 83.58 ? CP8 MLC 2102 G 1 
HETATM 33 O OP3 MLC . . . F 5 73.676 176.111 121.658 1 85.18 ? OP3 MLC 2102 G 1 
HETATM 34 C CP6 MLC . . . F 5 74.742 176.857 123.638 1 82.83 ? CP6 MLC 2102 G 1 
HETATM 35 O OP2 MLC . . . F 5 75.459 176.474 124.545 1 81.98 ? OP2 MLC 2102 G 1 
HETATM 36 N NP2 MLC . . . F 5 74.73 178.095 123.127 1 73.91 ? NP2 MLC 2102 G 1 
HETATM 37 C CP5 MLC . . . F 5 75.395 179.224 123.738 1 68.58 ? CP5 MLC 2102 G 1 
HETATM 38 C CP4 MLC . . . F 5 76.896 179.32 123.515 1 66.65 ? CP4 MLC 2102 G 1 
HETATM 39 C CP3 MLC . . . F 5 77.341 180.744 123.813 1 62.86 ? CP3 MLC 2102 G 1 
HETATM 40 O OP1 MLC . . . F 5 77.098 181.636 123.014 1 53.82 ? OP1 MLC 2102 G 1 
HETATM 41 N NP1 MLC . . . F 5 77.998 180.978 124.952 1 68.83 ? NP1 MLC 2102 G 1 
HETATM 42 C CP2 MLC . . . F 5 78.47 182.319 125.268 1 76.85 ? CP2 MLC 2102 G 1 
HETATM 43 C CP1 MLC . . . F 5 79.451 182.373 126.42 1 82.52 ? CP1 MLC 2102 G 1 
HETATM 44 S S MLC . . . F 5 80.377 183.866 126.28 1 93 ? S MLC 2102 G 1 
HETATM 45 P P3 MLC . . . F 5 64.578 170.275 120.585 1 135.24 ? P3 MLC 2102 G 1 
HETATM 46 O O31 MLC . . . F 5 64.419 168.777 120.48 1 131.08 ? O31 MLC 2102 G 1 
HETATM 47 O O32 MLC . . . F 5 63.287 171.049 120.459 1 126.44 ? O32 MLC 2102 G 1 
HETATM 48 O O33 MLC . . . F 5 65.716 170.812 119.743 1 127.36 ? O33 MLC 2102 G 1 
HETATM 49 C CM1 MLC . . . F 5 81.947 183.505 126.872 1 96.87 ? CM1 MLC 2102 G 1 
HETATM 50 C CM2 MLC . . . F 5 82.67 184.578 127.658 1 97.34 ? CM2 MLC 2102 G 1 
HETATM 51 C CM3 MLC . . . F 5 84.076 184.963 127.24 1 104.54 ? CM3 MLC 2102 G 1 
HETATM 52 O OM2 MLC . . . F 5 82.532 182.434 126.706 1 88.45 ? OM2 MLC 2102 G 1 
HETATM 53 O OM3 MLC . . . F 5 84.256 185.899 126.417 1 93.11 ? OM3 MLC 2102 G 1 
HETATM 54 O OM4 MLC . . . F 5 85.029 184.381 127.795 1 110.12 ? OM4 MLC 2102 G 1 
#
_model_server_stats.io_time_ms              124 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           54 
#