data_8PS7 # _model_server_result.job_id 89qrxhRN0eb1Sy-kjt1t2w _model_server_result.datetime_utc '2024-11-06 11:29:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ps7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":703}' # _entry.id 8PS7 # _exptl.entry_id 8PS7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.4 _cell.angle_gamma 90 _cell.entry_id 8PS7 _cell.length_a 51.684 _cell.length_b 78.242 _cell.length_c 70.365 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PS7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8PS7 _atom_sites.fract_transf_matrix[1][1] 0.019348 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000135 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012781 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 701 701 GOL GOL . D 3 SO4 A 1 702 702 SO4 SO4 . E 2 GOL A 1 703 703 GOL GOL . F 4 ANP A 1 704 704 ANP ANP . G 2 GOL B 1 701 701 GOL GOL . H 3 SO4 B 1 702 702 SO4 SO4 . I 4 ANP B 1 703 703 ANP ANP . J 5 HOH A 1 801 801 HOH HOH . J 5 HOH A 2 802 802 HOH HOH . J 5 HOH A 3 803 803 HOH HOH . J 5 HOH A 4 804 804 HOH HOH . J 5 HOH A 5 805 805 HOH HOH . J 5 HOH A 6 806 806 HOH HOH . J 5 HOH A 7 807 807 HOH HOH . J 5 HOH A 8 808 808 HOH HOH . J 5 HOH A 9 809 809 HOH HOH . J 5 HOH A 10 810 810 HOH HOH . J 5 HOH A 11 811 811 HOH HOH . J 5 HOH A 12 812 812 HOH HOH . J 5 HOH A 13 813 813 HOH HOH . J 5 HOH A 14 814 814 HOH HOH . J 5 HOH A 15 815 815 HOH HOH . J 5 HOH A 16 816 816 HOH HOH . J 5 HOH A 17 817 817 HOH HOH . J 5 HOH A 18 818 818 HOH HOH . J 5 HOH A 19 819 819 HOH HOH . J 5 HOH A 20 820 820 HOH HOH . J 5 HOH A 21 821 821 HOH HOH . J 5 HOH A 22 822 823 HOH HOH . J 5 HOH A 23 823 822 HOH HOH . J 5 HOH A 24 824 824 HOH HOH . J 5 HOH A 25 825 825 HOH HOH . J 5 HOH A 26 826 827 HOH HOH . J 5 HOH A 27 827 826 HOH HOH . J 5 HOH A 28 828 828 HOH HOH . J 5 HOH A 29 829 829 HOH HOH . J 5 HOH A 30 830 830 HOH HOH . J 5 HOH A 31 831 831 HOH HOH . J 5 HOH A 32 832 832 HOH HOH . J 5 HOH A 33 833 833 HOH HOH . J 5 HOH A 34 834 834 HOH HOH . J 5 HOH A 35 835 835 HOH HOH . J 5 HOH A 36 836 836 HOH HOH . J 5 HOH A 37 837 837 HOH HOH . J 5 HOH A 38 838 838 HOH HOH . J 5 HOH A 39 839 839 HOH HOH . J 5 HOH A 40 840 840 HOH HOH . J 5 HOH A 41 841 841 HOH HOH . J 5 HOH A 42 842 842 HOH HOH . J 5 HOH A 43 843 843 HOH HOH . J 5 HOH A 44 844 844 HOH HOH . J 5 HOH A 45 845 845 HOH HOH . J 5 HOH A 46 846 846 HOH HOH . J 5 HOH A 47 847 847 HOH HOH . J 5 HOH A 48 848 848 HOH HOH . J 5 HOH A 49 849 849 HOH HOH . J 5 HOH A 50 850 850 HOH HOH . J 5 HOH A 51 851 851 HOH HOH . J 5 HOH A 52 852 852 HOH HOH . J 5 HOH A 53 853 853 HOH HOH . J 5 HOH A 54 854 854 HOH HOH . J 5 HOH A 55 855 855 HOH HOH . J 5 HOH A 56 856 856 HOH HOH . J 5 HOH A 57 857 857 HOH HOH . J 5 HOH A 58 858 858 HOH HOH . J 5 HOH A 59 859 859 HOH HOH . J 5 HOH A 60 860 860 HOH HOH . J 5 HOH A 61 861 861 HOH HOH . J 5 HOH A 62 862 862 HOH HOH . J 5 HOH A 63 863 863 HOH HOH . J 5 HOH A 64 864 864 HOH HOH . J 5 HOH A 65 865 865 HOH HOH . J 5 HOH A 66 866 866 HOH HOH . J 5 HOH A 67 867 867 HOH HOH . J 5 HOH A 68 868 868 HOH HOH . J 5 HOH A 69 869 869 HOH HOH . J 5 HOH A 70 870 870 HOH HOH . J 5 HOH A 71 871 871 HOH HOH . J 5 HOH A 72 872 872 HOH HOH . J 5 HOH A 73 873 873 HOH HOH . J 5 HOH A 74 874 874 HOH HOH . J 5 HOH A 75 875 875 HOH HOH . J 5 HOH A 76 876 876 HOH HOH . J 5 HOH A 77 877 877 HOH HOH . J 5 HOH A 78 878 878 HOH HOH . J 5 HOH A 79 879 879 HOH HOH . J 5 HOH A 80 880 880 HOH HOH . J 5 HOH A 81 881 881 HOH HOH . J 5 HOH A 82 882 882 HOH HOH . J 5 HOH A 83 883 883 HOH HOH . J 5 HOH A 84 884 884 HOH HOH . J 5 HOH A 85 885 885 HOH HOH . J 5 HOH A 86 886 886 HOH HOH . J 5 HOH A 87 887 887 HOH HOH . J 5 HOH A 88 888 888 HOH HOH . J 5 HOH A 89 889 889 HOH HOH . J 5 HOH A 90 890 890 HOH HOH . J 5 HOH A 91 891 891 HOH HOH . J 5 HOH A 92 892 892 HOH HOH . J 5 HOH A 93 893 893 HOH HOH . J 5 HOH A 94 894 894 HOH HOH . J 5 HOH A 95 895 895 HOH HOH . J 5 HOH A 96 896 896 HOH HOH . J 5 HOH A 97 897 897 HOH HOH . J 5 HOH A 98 898 898 HOH HOH . K 5 HOH B 1 801 801 HOH HOH . K 5 HOH B 2 802 802 HOH HOH . K 5 HOH B 3 803 803 HOH HOH . K 5 HOH B 4 804 804 HOH HOH . K 5 HOH B 5 805 805 HOH HOH . K 5 HOH B 6 806 806 HOH HOH . K 5 HOH B 7 807 807 HOH HOH . K 5 HOH B 8 808 808 HOH HOH . K 5 HOH B 9 809 809 HOH HOH . K 5 HOH B 10 810 810 HOH HOH . K 5 HOH B 11 811 811 HOH HOH . K 5 HOH B 12 812 812 HOH HOH . K 5 HOH B 13 813 813 HOH HOH . K 5 HOH B 14 814 814 HOH HOH . K 5 HOH B 15 815 815 HOH HOH . K 5 HOH B 16 816 816 HOH HOH . K 5 HOH B 17 817 817 HOH HOH . K 5 HOH B 18 818 818 HOH HOH . K 5 HOH B 19 819 819 HOH HOH . K 5 HOH B 20 820 820 HOH HOH . K 5 HOH B 21 821 821 HOH HOH . K 5 HOH B 22 822 822 HOH HOH . K 5 HOH B 23 823 823 HOH HOH . K 5 HOH B 24 824 824 HOH HOH . K 5 HOH B 25 825 825 HOH HOH . K 5 HOH B 26 826 826 HOH HOH . K 5 HOH B 27 827 827 HOH HOH . K 5 HOH B 28 828 828 HOH HOH . K 5 HOH B 29 829 829 HOH HOH . K 5 HOH B 30 830 830 HOH HOH . K 5 HOH B 31 831 831 HOH HOH . K 5 HOH B 32 832 832 HOH HOH . K 5 HOH B 33 833 833 HOH HOH . K 5 HOH B 34 834 834 HOH HOH . K 5 HOH B 35 835 835 HOH HOH . K 5 HOH B 36 836 836 HOH HOH . K 5 HOH B 37 837 837 HOH HOH . K 5 HOH B 38 838 838 HOH HOH . K 5 HOH B 39 839 839 HOH HOH . K 5 HOH B 40 840 840 HOH HOH . K 5 HOH B 41 841 841 HOH HOH . K 5 HOH B 42 842 842 HOH HOH . K 5 HOH B 43 843 843 HOH HOH . K 5 HOH B 44 844 844 HOH HOH . K 5 HOH B 45 845 845 HOH HOH . K 5 HOH B 46 846 846 HOH HOH . K 5 HOH B 47 847 847 HOH HOH . K 5 HOH B 48 848 848 HOH HOH . K 5 HOH B 49 849 849 HOH HOH . K 5 HOH B 50 850 850 HOH HOH . K 5 HOH B 51 851 851 HOH HOH . K 5 HOH B 52 852 852 HOH HOH . K 5 HOH B 53 853 853 HOH HOH . K 5 HOH B 54 854 854 HOH HOH . K 5 HOH B 55 855 855 HOH HOH . K 5 HOH B 56 856 856 HOH HOH . K 5 HOH B 57 857 857 HOH HOH . K 5 HOH B 58 858 858 HOH HOH . K 5 HOH B 59 859 859 HOH HOH . K 5 HOH B 60 860 860 HOH HOH . K 5 HOH B 61 861 861 HOH HOH . K 5 HOH B 62 862 862 HOH HOH . K 5 HOH B 63 863 863 HOH HOH . K 5 HOH B 64 864 864 HOH HOH . K 5 HOH B 65 865 865 HOH HOH . K 5 HOH B 66 866 866 HOH HOH . K 5 HOH B 67 867 867 HOH HOH . K 5 HOH B 68 868 868 HOH HOH . K 5 HOH B 69 869 869 HOH HOH . K 5 HOH B 70 870 870 HOH HOH . K 5 HOH B 71 871 871 HOH HOH . K 5 HOH B 72 872 872 HOH HOH . K 5 HOH B 73 873 873 HOH HOH . K 5 HOH B 74 874 874 HOH HOH . K 5 HOH B 75 875 875 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . I 4 -16.124 -0.746 3.215 1 98.87 ? PG ANP 703 B 1 HETATM 2 O O1G ANP . . . I 4 -17.06 -1.899 3.03 1 88.58 ? O1G ANP 703 B 1 HETATM 3 O O2G ANP . . . I 4 -15.246 -0.995 4.501 1 83.34 ? O2G ANP 703 B 1 HETATM 4 O O3G ANP . . . I 4 -15.186 -0.614 1.946 1 94.74 ? O3G ANP 703 B 1 HETATM 5 P PB ANP . . . I 4 -16.348 1.968 2.589 1 86.19 ? PB ANP 703 B 1 HETATM 6 O O1B ANP . . . I 4 -17.115 3.21 2.905 1 75.51 ? O1B ANP 703 B 1 HETATM 7 O O2B ANP . . . I 4 -14.868 2.143 3.042 1 74.71 ? O2B ANP 703 B 1 HETATM 8 N N3B ANP . . . I 4 -17.021 0.676 3.425 1 87.16 ? N3B ANP 703 B 1 HETATM 9 P PA ANP . . . I 4 -17.61 1.037 0.319 1 82.98 ? PA ANP 703 B 1 HETATM 10 O O1A ANP . . . I 4 -17.243 0.669 -1.07 1 65.08 ? O1A ANP 703 B 1 HETATM 11 O O2A ANP . . . I 4 -18.068 -0.146 1.175 1 79.18 ? O2A ANP 703 B 1 HETATM 12 O O3A ANP . . . I 4 -16.378 1.739 1.045 1 78.98 ? O3A ANP 703 B 1 HETATM 13 O O5' ANP . . . I 4 -18.757 2.114 0.251 1 64.95 ? O5' ANP 703 B 1 HETATM 14 C C5' ANP . . . I 4 -19.375 2.347 -1.009 1 56.73 ? C5' ANP 703 B 1 HETATM 15 C C4' ANP . . . I 4 -20.617 1.509 -1.148 1 59.29 ? C4' ANP 703 B 1 HETATM 16 O O4' ANP . . . I 4 -21.669 2.315 -1.722 1 57.7 ? O4' ANP 703 B 1 HETATM 17 C C3' ANP . . . I 4 -20.466 0.327 -2.097 1 60.23 ? C3' ANP 703 B 1 HETATM 18 O O3' ANP . . . I 4 -21.344 -0.739 -1.75 1 61.77 ? O3' ANP 703 B 1 HETATM 19 C C2' ANP . . . I 4 -20.764 0.971 -3.452 1 53.39 ? C2' ANP 703 B 1 HETATM 20 O O2' ANP . . . I 4 -21.209 0.001 -4.389 1 56.86 ? O2' ANP 703 B 1 HETATM 21 C C1' ANP . . . I 4 -21.866 1.968 -3.084 1 52.03 ? C1' ANP 703 B 1 HETATM 22 N N9 ANP . . . I 4 -21.846 3.199 -3.872 1 45.16 ? N9 ANP 703 B 1 HETATM 23 C C8 ANP . . . I 4 -21.17 4.349 -3.561 1 40.64 ? C8 ANP 703 B 1 HETATM 24 N N7 ANP . . . I 4 -21.327 5.315 -4.435 1 33.36 ? N7 ANP 703 B 1 HETATM 25 C C5 ANP . . . I 4 -22.168 4.761 -5.388 1 32.76 ? C5 ANP 703 B 1 HETATM 26 C C6 ANP . . . I 4 -22.717 5.275 -6.579 1 33.19 ? C6 ANP 703 B 1 HETATM 27 N N6 ANP . . . I 4 -22.488 6.511 -7.029 1 34.92 ? N6 ANP 703 B 1 HETATM 28 N N1 ANP . . . I 4 -23.52 4.461 -7.302 1 31.43 ? N1 ANP 703 B 1 HETATM 29 C C2 ANP . . . I 4 -23.75 3.222 -6.855 1 33.29 ? C2 ANP 703 B 1 HETATM 30 N N3 ANP . . . I 4 -23.29 2.63 -5.749 1 35.79 ? N3 ANP 703 B 1 HETATM 31 C C4 ANP . . . I 4 -22.498 3.458 -5.054 1 39.31 ? C4 ANP 703 B 1 HETATM 32 H HNB1 ANP . . . I 4 -17.039 0.88 4.31 1 105.24 ? HNB1 ANP 703 B 1 HETATM 33 H "H5'1" ANP . . . I 4 -18.75 2.116 -1.719 1 68.72 ? "H5'1" ANP 703 B 1 HETATM 34 H "H5'2" ANP . . . I 4 -19.612 3.288 -1.079 1 68.72 ? "H5'2" ANP 703 B 1 HETATM 35 H H4' ANP . . . I 4 -20.936 1.193 -0.278 1 71.79 ? H4' ANP 703 B 1 HETATM 36 H H3' ANP . . . I 4 -19.559 0.012 -2.09 1 72.92 ? H3' ANP 703 B 1 HETATM 37 H HO3' ANP . . . I 4 -20.87 -1.339 -1.301 1 74.77 ? HO3' ANP 703 B 1 HETATM 38 H H2' ANP . . . I 4 -20.011 1.475 -3.784 1 64.71 ? H2' ANP 703 B 1 HETATM 39 H HO2' ANP . . . I 4 -21.697 -0.6 -3.955 1 68.88 ? HO2' ANP 703 B 1 HETATM 40 H H1' ANP . . . I 4 -22.717 1.513 -3.185 1 63.08 ? H1' ANP 703 B 1 HETATM 41 H H8 ANP . . . I 4 -20.631 4.44 -2.776 1 49.41 ? H8 ANP 703 B 1 HETATM 42 H HN61 ANP . . . I 4 -22.865 6.79 -7.825 1 42.55 ? HN61 ANP 703 B 1 HETATM 43 H HN62 ANP . . . I 4 -21.955 7.08 -6.552 1 42.55 ? HN62 ANP 703 B 1 HETATM 44 H H2 ANP . . . I 4 -24.333 2.678 -7.41 1 40.6 ? H2 ANP 703 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #