data_8PS7 # _model_server_result.job_id N8d8fsxmKqXv6SFiJflgpg _model_server_result.datetime_utc '2024-11-06 11:30:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ps7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":704}' # _entry.id 8PS7 # _exptl.entry_id 8PS7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.4 _cell.angle_gamma 90 _cell.entry_id 8PS7 _cell.length_a 51.684 _cell.length_b 78.242 _cell.length_c 70.365 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PS7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8PS7 _atom_sites.fract_transf_matrix[1][1] 0.019348 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000135 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012781 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 701 701 GOL GOL . D 3 SO4 A 1 702 702 SO4 SO4 . E 2 GOL A 1 703 703 GOL GOL . F 4 ANP A 1 704 704 ANP ANP . G 2 GOL B 1 701 701 GOL GOL . H 3 SO4 B 1 702 702 SO4 SO4 . I 4 ANP B 1 703 703 ANP ANP . J 5 HOH A 1 801 801 HOH HOH . J 5 HOH A 2 802 802 HOH HOH . J 5 HOH A 3 803 803 HOH HOH . J 5 HOH A 4 804 804 HOH HOH . J 5 HOH A 5 805 805 HOH HOH . J 5 HOH A 6 806 806 HOH HOH . J 5 HOH A 7 807 807 HOH HOH . J 5 HOH A 8 808 808 HOH HOH . J 5 HOH A 9 809 809 HOH HOH . J 5 HOH A 10 810 810 HOH HOH . J 5 HOH A 11 811 811 HOH HOH . J 5 HOH A 12 812 812 HOH HOH . J 5 HOH A 13 813 813 HOH HOH . J 5 HOH A 14 814 814 HOH HOH . J 5 HOH A 15 815 815 HOH HOH . J 5 HOH A 16 816 816 HOH HOH . J 5 HOH A 17 817 817 HOH HOH . J 5 HOH A 18 818 818 HOH HOH . J 5 HOH A 19 819 819 HOH HOH . J 5 HOH A 20 820 820 HOH HOH . J 5 HOH A 21 821 821 HOH HOH . J 5 HOH A 22 822 823 HOH HOH . J 5 HOH A 23 823 822 HOH HOH . J 5 HOH A 24 824 824 HOH HOH . J 5 HOH A 25 825 825 HOH HOH . J 5 HOH A 26 826 827 HOH HOH . J 5 HOH A 27 827 826 HOH HOH . J 5 HOH A 28 828 828 HOH HOH . J 5 HOH A 29 829 829 HOH HOH . J 5 HOH A 30 830 830 HOH HOH . J 5 HOH A 31 831 831 HOH HOH . J 5 HOH A 32 832 832 HOH HOH . J 5 HOH A 33 833 833 HOH HOH . J 5 HOH A 34 834 834 HOH HOH . J 5 HOH A 35 835 835 HOH HOH . J 5 HOH A 36 836 836 HOH HOH . J 5 HOH A 37 837 837 HOH HOH . J 5 HOH A 38 838 838 HOH HOH . J 5 HOH A 39 839 839 HOH HOH . J 5 HOH A 40 840 840 HOH HOH . J 5 HOH A 41 841 841 HOH HOH . J 5 HOH A 42 842 842 HOH HOH . J 5 HOH A 43 843 843 HOH HOH . J 5 HOH A 44 844 844 HOH HOH . J 5 HOH A 45 845 845 HOH HOH . J 5 HOH A 46 846 846 HOH HOH . J 5 HOH A 47 847 847 HOH HOH . J 5 HOH A 48 848 848 HOH HOH . J 5 HOH A 49 849 849 HOH HOH . J 5 HOH A 50 850 850 HOH HOH . J 5 HOH A 51 851 851 HOH HOH . J 5 HOH A 52 852 852 HOH HOH . J 5 HOH A 53 853 853 HOH HOH . J 5 HOH A 54 854 854 HOH HOH . J 5 HOH A 55 855 855 HOH HOH . J 5 HOH A 56 856 856 HOH HOH . J 5 HOH A 57 857 857 HOH HOH . J 5 HOH A 58 858 858 HOH HOH . J 5 HOH A 59 859 859 HOH HOH . J 5 HOH A 60 860 860 HOH HOH . J 5 HOH A 61 861 861 HOH HOH . J 5 HOH A 62 862 862 HOH HOH . J 5 HOH A 63 863 863 HOH HOH . J 5 HOH A 64 864 864 HOH HOH . J 5 HOH A 65 865 865 HOH HOH . J 5 HOH A 66 866 866 HOH HOH . J 5 HOH A 67 867 867 HOH HOH . J 5 HOH A 68 868 868 HOH HOH . J 5 HOH A 69 869 869 HOH HOH . J 5 HOH A 70 870 870 HOH HOH . J 5 HOH A 71 871 871 HOH HOH . J 5 HOH A 72 872 872 HOH HOH . J 5 HOH A 73 873 873 HOH HOH . J 5 HOH A 74 874 874 HOH HOH . J 5 HOH A 75 875 875 HOH HOH . J 5 HOH A 76 876 876 HOH HOH . J 5 HOH A 77 877 877 HOH HOH . J 5 HOH A 78 878 878 HOH HOH . J 5 HOH A 79 879 879 HOH HOH . J 5 HOH A 80 880 880 HOH HOH . J 5 HOH A 81 881 881 HOH HOH . J 5 HOH A 82 882 882 HOH HOH . J 5 HOH A 83 883 883 HOH HOH . J 5 HOH A 84 884 884 HOH HOH . J 5 HOH A 85 885 885 HOH HOH . J 5 HOH A 86 886 886 HOH HOH . J 5 HOH A 87 887 887 HOH HOH . J 5 HOH A 88 888 888 HOH HOH . J 5 HOH A 89 889 889 HOH HOH . J 5 HOH A 90 890 890 HOH HOH . J 5 HOH A 91 891 891 HOH HOH . J 5 HOH A 92 892 892 HOH HOH . J 5 HOH A 93 893 893 HOH HOH . J 5 HOH A 94 894 894 HOH HOH . J 5 HOH A 95 895 895 HOH HOH . J 5 HOH A 96 896 896 HOH HOH . J 5 HOH A 97 897 897 HOH HOH . J 5 HOH A 98 898 898 HOH HOH . K 5 HOH B 1 801 801 HOH HOH . K 5 HOH B 2 802 802 HOH HOH . K 5 HOH B 3 803 803 HOH HOH . K 5 HOH B 4 804 804 HOH HOH . K 5 HOH B 5 805 805 HOH HOH . K 5 HOH B 6 806 806 HOH HOH . K 5 HOH B 7 807 807 HOH HOH . K 5 HOH B 8 808 808 HOH HOH . K 5 HOH B 9 809 809 HOH HOH . K 5 HOH B 10 810 810 HOH HOH . K 5 HOH B 11 811 811 HOH HOH . K 5 HOH B 12 812 812 HOH HOH . K 5 HOH B 13 813 813 HOH HOH . K 5 HOH B 14 814 814 HOH HOH . K 5 HOH B 15 815 815 HOH HOH . K 5 HOH B 16 816 816 HOH HOH . K 5 HOH B 17 817 817 HOH HOH . K 5 HOH B 18 818 818 HOH HOH . K 5 HOH B 19 819 819 HOH HOH . K 5 HOH B 20 820 820 HOH HOH . K 5 HOH B 21 821 821 HOH HOH . K 5 HOH B 22 822 822 HOH HOH . K 5 HOH B 23 823 823 HOH HOH . K 5 HOH B 24 824 824 HOH HOH . K 5 HOH B 25 825 825 HOH HOH . K 5 HOH B 26 826 826 HOH HOH . K 5 HOH B 27 827 827 HOH HOH . K 5 HOH B 28 828 828 HOH HOH . K 5 HOH B 29 829 829 HOH HOH . K 5 HOH B 30 830 830 HOH HOH . K 5 HOH B 31 831 831 HOH HOH . K 5 HOH B 32 832 832 HOH HOH . K 5 HOH B 33 833 833 HOH HOH . K 5 HOH B 34 834 834 HOH HOH . K 5 HOH B 35 835 835 HOH HOH . K 5 HOH B 36 836 836 HOH HOH . K 5 HOH B 37 837 837 HOH HOH . K 5 HOH B 38 838 838 HOH HOH . K 5 HOH B 39 839 839 HOH HOH . K 5 HOH B 40 840 840 HOH HOH . K 5 HOH B 41 841 841 HOH HOH . K 5 HOH B 42 842 842 HOH HOH . K 5 HOH B 43 843 843 HOH HOH . K 5 HOH B 44 844 844 HOH HOH . K 5 HOH B 45 845 845 HOH HOH . K 5 HOH B 46 846 846 HOH HOH . K 5 HOH B 47 847 847 HOH HOH . K 5 HOH B 48 848 848 HOH HOH . K 5 HOH B 49 849 849 HOH HOH . K 5 HOH B 50 850 850 HOH HOH . K 5 HOH B 51 851 851 HOH HOH . K 5 HOH B 52 852 852 HOH HOH . K 5 HOH B 53 853 853 HOH HOH . K 5 HOH B 54 854 854 HOH HOH . K 5 HOH B 55 855 855 HOH HOH . K 5 HOH B 56 856 856 HOH HOH . K 5 HOH B 57 857 857 HOH HOH . K 5 HOH B 58 858 858 HOH HOH . K 5 HOH B 59 859 859 HOH HOH . K 5 HOH B 60 860 860 HOH HOH . K 5 HOH B 61 861 861 HOH HOH . K 5 HOH B 62 862 862 HOH HOH . K 5 HOH B 63 863 863 HOH HOH . K 5 HOH B 64 864 864 HOH HOH . K 5 HOH B 65 865 865 HOH HOH . K 5 HOH B 66 866 866 HOH HOH . K 5 HOH B 67 867 867 HOH HOH . K 5 HOH B 68 868 868 HOH HOH . K 5 HOH B 69 869 869 HOH HOH . K 5 HOH B 70 870 870 HOH HOH . K 5 HOH B 71 871 871 HOH HOH . K 5 HOH B 72 872 872 HOH HOH . K 5 HOH B 73 873 873 HOH HOH . K 5 HOH B 74 874 874 HOH HOH . K 5 HOH B 75 875 875 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . F 4 -12.917 36.151 -33.689 1 82.84 ? PG ANP 704 A 1 HETATM 2 O O1G ANP . . . F 4 -13.339 37.142 -34.739 1 71.06 ? O1G ANP 704 A 1 HETATM 3 O O2G ANP . . . F 4 -13.532 36.586 -32.297 1 71.6 ? O2G ANP 704 A 1 HETATM 4 O O3G ANP . . . F 4 -11.339 36.147 -33.563 1 59.82 ? O3G ANP 704 A 1 HETATM 5 P PB ANP . . . F 4 -13.584 34.29 -35.699 1 59.02 ? PB ANP 704 A 1 HETATM 6 O O1B ANP . . . F 4 -14.008 35.541 -36.412 1 70.16 ? O1B ANP 704 A 1 HETATM 7 O O2B ANP . . . F 4 -12.19 33.863 -36.243 1 59.37 ? O2B ANP 704 A 1 HETATM 8 N N3B ANP . . . F 4 -13.354 34.546 -34.053 1 52.62 ? N3B ANP 704 A 1 HETATM 9 P PA ANP . . . F 4 -15.431 32.279 -34.973 1 50.51 ? PA ANP 704 A 1 HETATM 10 O O1A ANP . . . F 4 -15.946 31.038 -35.6 1 49.59 ? O1A ANP 704 A 1 HETATM 11 O O2A ANP . . . F 4 -14.477 32.035 -33.799 1 53.71 ? O2A ANP 704 A 1 HETATM 12 O O3A ANP . . . F 4 -14.634 33.171 -36.042 1 55.42 ? O3A ANP 704 A 1 HETATM 13 O O5' ANP . . . F 4 -16.679 33.154 -34.532 1 50.29 ? O5' ANP 704 A 1 HETATM 14 C C5' ANP . . . F 4 -16.372 34.359 -33.829 1 52.21 ? C5' ANP 704 A 1 HETATM 15 C C4' ANP . . . F 4 -17.595 35.001 -33.245 1 46.19 ? C4' ANP 704 A 1 HETATM 16 O O4' ANP . . . F 4 -18.479 33.975 -32.752 1 48.33 ? O4' ANP 704 A 1 HETATM 17 C C3' ANP . . . F 4 -17.294 35.909 -32.056 1 46.59 ? C3' ANP 704 A 1 HETATM 18 O O3' ANP . . . F 4 -18.18 37.021 -31.989 1 55.22 ? O3' ANP 704 A 1 HETATM 19 C C2' ANP . . . F 4 -17.433 34.956 -30.869 1 44.29 ? C2' ANP 704 A 1 HETATM 20 O O2' ANP . . . F 4 -17.806 35.626 -29.671 1 44.88 ? O2' ANP 704 A 1 HETATM 21 C C1' ANP . . . F 4 -18.562 34.039 -31.341 1 46.77 ? C1' ANP 704 A 1 HETATM 22 N N9 ANP . . . F 4 -18.482 32.684 -30.814 1 39.98 ? N9 ANP 704 A 1 HETATM 23 C C8 ANP . . . F 4 -17.816 31.613 -31.352 1 37.57 ? C8 ANP 704 A 1 HETATM 24 N N7 ANP . . . F 4 -17.925 30.507 -30.656 1 31.73 ? N7 ANP 704 A 1 HETATM 25 C C5 ANP . . . F 4 -18.722 30.879 -29.58 1 31.4 ? C5 ANP 704 A 1 HETATM 26 C C6 ANP . . . F 4 -19.211 30.159 -28.472 1 28.41 ? C6 ANP 704 A 1 HETATM 27 N N6 ANP . . . F 4 -18.958 28.87 -28.249 1 24.38 ? N6 ANP 704 A 1 HETATM 28 N N1 ANP . . . F 4 -19.977 30.828 -27.582 1 30.18 ? N1 ANP 704 A 1 HETATM 29 C C2 ANP . . . F 4 -20.232 32.121 -27.796 1 29.28 ? C2 ANP 704 A 1 HETATM 30 N N3 ANP . . . F 4 -19.826 32.9 -28.801 1 33.56 ? N3 ANP 704 A 1 HETATM 31 C C4 ANP . . . F 4 -19.068 32.212 -29.666 1 30.81 ? C4 ANP 704 A 1 HETATM 32 H HNB1 ANP . . . F 4 -12.686 33.999 -33.771 1 63.79 ? HNB1 ANP 704 A 1 HETATM 33 H "H5'1" ANP . . . F 4 -15.752 34.15 -33.109 1 63.3 ? "H5'1" ANP 704 A 1 HETATM 34 H "H5'2" ANP . . . F 4 -15.953 34.982 -34.448 1 63.3 ? "H5'2" ANP 704 A 1 HETATM 35 H H4' ANP . . . F 4 -18.105 35.501 -33.915 1 56.08 ? H4' ANP 704 A 1 HETATM 36 H H3' ANP . . . F 4 -16.386 36.215 -32.121 1 56.56 ? H3' ANP 704 A 1 HETATM 37 H HO3' ANP . . . F 4 -18.687 36.967 -31.265 1 66.9 ? HO3' ANP 704 A 1 HETATM 38 H H2' ANP . . . F 4 -16.624 34.441 -30.759 1 53.79 ? H2' ANP 704 A 1 HETATM 39 H HO2' ANP . . . F 4 -17.909 35.027 -29.023 1 54.5 ? HO2' ANP 704 A 1 HETATM 40 H H1' ANP . . . F 4 -19.402 34.452 -31.088 1 56.77 ? H1' ANP 704 A 1 HETATM 41 H H8 ANP . . . F 4 -17.315 31.668 -32.164 1 45.73 ? H8 ANP 704 A 1 HETATM 42 H HN61 ANP . . . F 4 -19.308 28.45 -27.505 1 29.91 ? HN61 ANP 704 A 1 HETATM 43 H HN62 ANP . . . F 4 -18.431 28.405 -28.833 1 29.91 ? HN62 ANP 704 A 1 HETATM 44 H H2 ANP . . . F 4 -20.788 32.555 -27.128 1 35.78 ? H2 ANP 704 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #