data_8PS9 # _model_server_result.job_id ggI6IBDbqgPWp4b4f8PUtw _model_server_result.datetime_utc '2024-12-26 15:31:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ps9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2101}' # _entry.id 8PS9 # _exptl.entry_id 8PS9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PS9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 8PS9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 FMN G 1 2101 2101 FMN FMN . E 4 MLC G 1 2102 2201 MLC MLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 3 144.288 109.045 97.544 1 41.3 ? N1 FMN 2101 G 1 HETATM 2 C C2 FMN . . . D 3 143.199 109.752 97.884 1 40.45 ? C2 FMN 2101 G 1 HETATM 3 O O2 FMN . . . D 3 142.098 109.434 97.335 1 39.32 ? O2 FMN 2101 G 1 HETATM 4 N N3 FMN . . . D 3 143.269 110.729 98.813 1 40.28 ? N3 FMN 2101 G 1 HETATM 5 C C4 FMN . . . D 3 144.39 111.076 99.465 1 41.93 ? C4 FMN 2101 G 1 HETATM 6 O O4 FMN . . . D 3 144.388 112.022 100.308 1 41.81 ? O4 FMN 2101 G 1 HETATM 7 C C4A FMN . . . D 3 145.612 110.302 99.129 1 43.22 ? C4A FMN 2101 G 1 HETATM 8 N N5 FMN . . . D 3 146.809 110.544 99.672 1 41.87 ? N5 FMN 2101 G 1 HETATM 9 C C5A FMN . . . D 3 147.87 109.807 99.28 1 42.51 ? C5A FMN 2101 G 1 HETATM 10 C C6 FMN . . . D 3 149.067 110.13 99.84 1 46.37 ? C6 FMN 2101 G 1 HETATM 11 C C7 FMN . . . D 3 150.221 109.48 99.499 1 45.73 ? C7 FMN 2101 G 1 HETATM 12 C C7M FMN . . . D 3 151.446 109.942 100.199 1 49.79 ? C7M FMN 2101 G 1 HETATM 13 C C8 FMN . . . D 3 150.21 108.389 98.495 1 44.76 ? C8 FMN 2101 G 1 HETATM 14 C C8M FMN . . . D 3 151.491 107.666 98.146 1 42.01 ? C8M FMN 2101 G 1 HETATM 15 C C9 FMN . . . D 3 148.996 108.072 97.895 1 40.95 ? C9 FMN 2101 G 1 HETATM 16 C C9A FMN . . . D 3 147.83 108.749 98.253 1 39.12 ? C9A FMN 2101 G 1 HETATM 17 N N10 FMN . . . D 3 146.589 108.492 97.683 1 38.7 ? N10 FMN 2101 G 1 HETATM 18 C C10 FMN . . . D 3 145.484 109.246 98.099 1 40.75 ? C10 FMN 2101 G 1 HETATM 19 C C1' FMN . . . D 3 146.412 107.474 96.649 1 38 ? C1' FMN 2101 G 1 HETATM 20 C C2' FMN . . . D 3 146.809 108.125 95.32 1 33.07 ? C2' FMN 2101 G 1 HETATM 21 O O2' FMN . . . D 3 145.741 108.971 94.926 1 34.46 ? O2' FMN 2101 G 1 HETATM 22 C C3' FMN . . . D 3 147.054 107.134 94.229 1 29.86 ? C3' FMN 2101 G 1 HETATM 23 O O3' FMN . . . D 3 145.975 106.228 94.301 1 31.45 ? O3' FMN 2101 G 1 HETATM 24 C C4' FMN . . . D 3 148.308 106.29 94.421 1 32.86 ? C4' FMN 2101 G 1 HETATM 25 O O4' FMN . . . D 3 149.428 106.996 94.961 1 31.94 ? O4' FMN 2101 G 1 HETATM 26 C C5' FMN . . . D 3 148.715 105.676 93.101 1 33.73 ? C5' FMN 2101 G 1 HETATM 27 O O5' FMN . . . D 3 149.575 104.59 93.363 1 34.83 ? O5' FMN 2101 G 1 HETATM 28 P P FMN . . . D 3 151.15 104.794 93.155 1 40.07 ? P FMN 2101 G 1 HETATM 29 O O1P FMN . . . D 3 151.678 103.399 93.463 1 43.2 ? O1P FMN 2101 G 1 HETATM 30 O O2P FMN . . . D 3 151.459 105.343 91.755 1 39.78 ? O2P FMN 2101 G 1 HETATM 31 O O3P FMN . . . D 3 151.403 105.765 94.26 1 42.47 ? O3P FMN 2101 G 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #