data_8PS9 # _model_server_result.job_id FaX1N9M1oASsyEZlShbVbw _model_server_result.datetime_utc '2024-12-26 15:28:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ps9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2102}' # _entry.id 8PS9 # _exptl.entry_id 8PS9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 853.58 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONYL-COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PS9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H38 N7 O19 P3 S' _chem_comp.formula_weight 853.58 _chem_comp.id MLC _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONYL-COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 N9 MLC sing 289 n y C8 N7 MLC doub 290 n y C8 H8 MLC sing 291 n n N9 C4 MLC sing 292 n y N9 C1' MLC sing 293 n n C4 C5 MLC sing 294 n y C4 N3 MLC doub 295 n y C5 N7 MLC sing 296 n y C5 C6 MLC doub 297 n y N3 C2 MLC sing 298 n y C2 N1 MLC doub 299 n y C2 H2 MLC sing 300 n n N1 C6 MLC sing 301 n y C6 N6 MLC sing 302 n n N6 HN61 MLC sing 303 n n N6 HN62 MLC sing 304 n n C1' C2' MLC sing 305 n n C1' O4' MLC sing 306 n n C1' H1' MLC sing 307 n n C2' O2' MLC sing 308 n n C2' C3' MLC sing 309 n n C2' H2' MLC sing 310 n n O2' HO2 MLC sing 311 n n C3' O3' MLC sing 312 n n C3' C4' MLC sing 313 n n C3' H3' MLC sing 314 n n O3' P3 MLC sing 315 n n C4' O4' MLC sing 316 n n C4' C5' MLC sing 317 n n C4' H4' MLC sing 318 n n C5' O5' MLC sing 319 n n C5' "H5'1" MLC sing 320 n n C5' "H5'2" MLC sing 321 n n O5' P1 MLC sing 322 n n P1 O11 MLC doub 323 n n P1 O12 MLC sing 324 n n P1 O6 MLC sing 325 n n O12 H12 MLC sing 326 n n O6 P2 MLC sing 327 n n P2 O21 MLC doub 328 n n P2 O22 MLC sing 329 n n P2 O7 MLC sing 330 n n O22 H22 MLC sing 331 n n O7 CPB MLC sing 332 n n CPB CPA MLC sing 333 n n CPB HPB1 MLC sing 334 n n CPB HPB2 MLC sing 335 n n CPA CP7 MLC sing 336 n n CPA CP9 MLC sing 337 n n CPA CP8 MLC sing 338 n n CP7 OP3 MLC sing 339 n n CP7 CP6 MLC sing 340 n n CP7 HP7 MLC sing 341 n n CP9 HP91 MLC sing 342 n n CP9 HP92 MLC sing 343 n n CP9 HP93 MLC sing 344 n n CP8 HP81 MLC sing 345 n n CP8 HP82 MLC sing 346 n n CP8 HP83 MLC sing 347 n n OP3 HP3 MLC sing 348 n n CP6 OP2 MLC doub 349 n n CP6 NP2 MLC sing 350 n n NP2 CP5 MLC sing 351 n n NP2 HP2 MLC sing 352 n n CP5 CP4 MLC sing 353 n n CP5 HP51 MLC sing 354 n n CP5 HP52 MLC sing 355 n n CP4 CP3 MLC sing 356 n n CP4 HP41 MLC sing 357 n n CP4 HP42 MLC sing 358 n n CP3 OP1 MLC doub 359 n n CP3 NP1 MLC sing 360 n n NP1 CP2 MLC sing 361 n n NP1 HP1 MLC sing 362 n n CP2 CP1 MLC sing 363 n n CP2 HP21 MLC sing 364 n n CP2 HP22 MLC sing 365 n n CP1 S MLC sing 366 n n CP1 HP11 MLC sing 367 n n CP1 HP12 MLC sing 368 n n S CM1 MLC sing 369 n n P3 O31 MLC sing 370 n n P3 O32 MLC sing 371 n n P3 O33 MLC doub 372 n n O31 H31 MLC sing 373 n n O32 H32 MLC sing 374 n n CM1 CM2 MLC sing 375 n n CM1 OM2 MLC doub 376 n n CM2 CM3 MLC sing 377 n n CM2 HM21 MLC sing 378 n n CM2 HM22 MLC sing 379 n n CM3 OM3 MLC sing 380 n n CM3 OM4 MLC doub 381 n n OM3 HO3 MLC sing 382 n n # _atom_sites.entry_id 8PS9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 FMN G 1 2101 2101 FMN FMN . E 4 MLC G 1 2102 2201 MLC MLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 MLC . . . E 4 67.166 174.516 121.879 1 130.53 ? C8 MLC 2102 G 1 HETATM 2 N N9 MLC . . . E 4 66.151 174.347 122.749 1 133.58 ? N9 MLC 2102 G 1 HETATM 3 C C4 MLC . . . E 4 65.456 175.461 122.844 1 120.55 ? C4 MLC 2102 G 1 HETATM 4 C C5 MLC . . . E 4 66.124 176.424 121.957 1 120.55 ? C5 MLC 2102 G 1 HETATM 5 N N7 MLC . . . E 4 67.165 175.784 121.393 1 125.57 ? N7 MLC 2102 G 1 HETATM 6 N N3 MLC . . . E 4 64.364 175.82 123.554 1 112.48 ? N3 MLC 2102 G 1 HETATM 7 C C2 MLC . . . E 4 63.878 177.067 123.454 1 118.3 ? C2 MLC 2102 G 1 HETATM 8 N N1 MLC . . . E 4 64.439 178.014 122.663 1 113.77 ? N1 MLC 2102 G 1 HETATM 9 C C6 MLC . . . E 4 65.536 177.777 121.905 1 109.72 ? C6 MLC 2102 G 1 HETATM 10 N N6 MLC . . . E 4 66.075 178.729 121.124 1 100.73 ? N6 MLC 2102 G 1 HETATM 11 C C1' MLC . . . E 4 65.764 173.143 123.506 1 146.47 ? C1' MLC 2102 G 1 HETATM 12 C C2' MLC . . . E 4 64.801 172.377 122.619 1 159.82 ? C2' MLC 2102 G 1 HETATM 13 O O2' MLC . . . E 4 63.614 171.995 123.327 1 158.54 ? O2' MLC 2102 G 1 HETATM 14 C C3' MLC . . . E 4 65.625 171.192 122.15 1 160.65 ? C3' MLC 2102 G 1 HETATM 15 O O3' MLC . . . E 4 64.803 170.067 121.801 1 158.97 ? O3' MLC 2102 G 1 HETATM 16 C C4' MLC . . . E 4 66.605 170.963 123.312 1 150.67 ? C4' MLC 2102 G 1 HETATM 17 O O4' MLC . . . E 4 66.86 172.277 123.825 1 152.56 ? O4' MLC 2102 G 1 HETATM 18 C C5' MLC . . . E 4 67.936 170.283 122.976 1 141.24 ? C5' MLC 2102 G 1 HETATM 19 O O5' MLC . . . E 4 68.193 170.288 121.566 1 140.63 ? O5' MLC 2102 G 1 HETATM 20 P P1 MLC . . . E 4 69.263 171.187 120.746 1 133.44 ? P1 MLC 2102 G 1 HETATM 21 O O11 MLC . . . E 4 68.54 172.06 119.742 1 132.25 ? O11 MLC 2102 G 1 HETATM 22 O O12 MLC . . . E 4 70.281 170.191 120.246 1 131.49 ? O12 MLC 2102 G 1 HETATM 23 O O6 MLC . . . E 4 69.93 172.184 121.809 1 124.14 ? O6 MLC 2102 G 1 HETATM 24 P P2 MLC . . . E 4 71.409 171.896 122.35 1 116.98 ? P2 MLC 2102 G 1 HETATM 25 O O21 MLC . . . E 4 71.34 170.774 123.363 1 118.33 ? O21 MLC 2102 G 1 HETATM 26 O O22 MLC . . . E 4 72.322 171.812 121.155 1 117.85 ? O22 MLC 2102 G 1 HETATM 27 O O7 MLC . . . E 4 71.786 173.252 123.116 1 105.22 ? O7 MLC 2102 G 1 HETATM 28 C CPB MLC . . . E 4 71.611 174.505 122.457 1 95.26 ? CPB MLC 2102 G 1 HETATM 29 C CPA MLC . . . E 4 72.37 175.627 123.17 1 86.83 ? CPA MLC 2102 G 1 HETATM 30 C CP7 MLC . . . E 4 73.825 175.672 122.672 1 83.8 ? CP7 MLC 2102 G 1 HETATM 31 C CP9 MLC . . . E 4 71.633 176.939 122.905 1 83.34 ? CP9 MLC 2102 G 1 HETATM 32 C CP8 MLC . . . E 4 72.318 175.367 124.68 1 88.48 ? CP8 MLC 2102 G 1 HETATM 33 O OP3 MLC . . . E 4 73.867 176.011 121.276 1 83.26 ? OP3 MLC 2102 G 1 HETATM 34 C CP6 MLC . . . E 4 74.68 176.681 123.395 1 80.37 ? CP6 MLC 2102 G 1 HETATM 35 O OP2 MLC . . . E 4 75.152 176.4 124.489 1 74.6 ? OP2 MLC 2102 G 1 HETATM 36 N NP2 MLC . . . E 4 74.817 177.861 122.765 1 71.78 ? NP2 MLC 2102 G 1 HETATM 37 C CP5 MLC . . . E 4 75.393 179.042 123.367 1 64.05 ? CP5 MLC 2102 G 1 HETATM 38 C CP4 MLC . . . E 4 76.872 179.224 123.142 1 61.54 ? CP4 MLC 2102 G 1 HETATM 39 C CP3 MLC . . . E 4 77.202 180.635 123.56 1 64.82 ? CP3 MLC 2102 G 1 HETATM 40 O OP1 MLC . . . E 4 76.871 181.559 122.823 1 54.28 ? OP1 MLC 2102 G 1 HETATM 41 N NP1 MLC . . . E 4 77.826 180.781 124.74 1 73.03 ? NP1 MLC 2102 G 1 HETATM 42 C CP2 MLC . . . E 4 78.176 182.07 125.319 1 82.4 ? CP2 MLC 2102 G 1 HETATM 43 C CP1 MLC . . . E 4 79.597 182.058 125.852 1 91.45 ? CP1 MLC 2102 G 1 HETATM 44 S S MLC . . . E 4 80.181 183.718 125.934 1 102.86 ? S MLC 2102 G 1 HETATM 45 P P3 MLC . . . E 4 63.767 170.099 120.549 1 154.9 ? P3 MLC 2102 G 1 HETATM 46 O O31 MLC . . . E 4 63.688 168.652 120.119 1 141.74 ? O31 MLC 2102 G 1 HETATM 47 O O32 MLC . . . E 4 62.488 170.626 121.164 1 149.03 ? O32 MLC 2102 G 1 HETATM 48 O O33 MLC . . . E 4 64.381 171.013 119.505 1 141.61 ? O33 MLC 2102 G 1 HETATM 49 C CM1 MLC . . . E 4 81.773 183.521 126.509 1 118.71 ? CM1 MLC 2102 G 1 HETATM 50 C CM2 MLC . . . E 4 82.546 184.768 126.916 1 121.31 ? CM2 MLC 2102 G 1 HETATM 51 C CM3 MLC . . . E 4 84.054 184.719 126.838 1 122.22 ? CM3 MLC 2102 G 1 HETATM 52 O OM2 MLC . . . E 4 82.319 182.42 126.617 1 102.57 ? OM2 MLC 2102 G 1 HETATM 53 O OM3 MLC . . . E 4 84.644 185.337 125.919 1 108.76 ? OM3 MLC 2102 G 1 HETATM 54 O OM4 MLC . . . E 4 84.658 184.104 127.743 1 123.72 ? OM4 MLC 2102 G 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 54 #