data_8PSM
#
_model_server_result.job_id            els4ZZ34ArobpgN-FtdIsg 
_model_server_result.datetime_utc      '2024-12-26 09:56:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8psm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":2101}' 
#
_entry.id    8PSM 
#
_exptl.entry_id    8PSM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PSM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PSM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 1246 A CYS 1246 1_555 A SG CYS 1327 A CYS 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? 
covale ? covale1 B OG SER 180 B SER 180 1_555 D P24 PNS . B PNS 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.617 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     8PSM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 PNS B 1 1901 180 PNS PSE . 
E 4 FMN G 1 2101 2101 FMN FMN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . E 4 146.768 108.287 97.778 1 80.87 ? N1 FMN 2101 G 1 
HETATM 2 C C2 FMN . . . E 4 145.693 109.012 98.2 1 81.36 ? C2 FMN 2101 G 1 
HETATM 3 O O2 FMN . . . E 4 144.522 108.763 97.788 1 76.68 ? O2 FMN 2101 G 1 
HETATM 4 N N3 FMN . . . E 4 145.839 110.006 99.09 1 75.99 ? N3 FMN 2101 G 1 
HETATM 5 C C4 FMN . . . E 4 147.001 110.36 99.633 1 70.05 ? C4 FMN 2101 G 1 
HETATM 6 O O4 FMN . . . E 4 147.064 111.299 100.463 1 83.93 ? O4 FMN 2101 G 1 
HETATM 7 C C4A FMN . . . E 4 148.189 109.611 99.237 1 70.3 ? C4A FMN 2101 G 1 
HETATM 8 N N5 FMN . . . E 4 149.392 109.903 99.73 1 72.06 ? N5 FMN 2101 G 1 
HETATM 9 C C5A FMN . . . E 4 150.479 109.22 99.34 1 69.3 ? C5A FMN 2101 G 1 
HETATM 10 C C6 FMN . . . E 4 151.669 109.61 99.853 1 76.22 ? C6 FMN 2101 G 1 
HETATM 11 C C7 FMN . . . E 4 152.841 109.009 99.49 1 75.81 ? C7 FMN 2101 G 1 
HETATM 12 C C7M FMN . . . E 4 154.142 109.5 100.077 1 82.19 ? C7M FMN 2101 G 1 
HETATM 13 C C8 FMN . . . E 4 152.798 107.913 98.527 1 72.47 ? C8 FMN 2101 G 1 
HETATM 14 C C8M FMN . . . E 4 154.068 107.211 98.128 1 76.41 ? C8M FMN 2101 G 1 
HETATM 15 C C9 FMN . . . E 4 151.595 107.53 97.994 1 67.57 ? C9 FMN 2101 G 1 
HETATM 16 C C9A FMN . . . E 4 150.422 108.144 98.35 1 68.14 ? C9A FMN 2101 G 1 
HETATM 17 N N10 FMN . . . E 4 149.153 107.803 97.82 1 75.13 ? N10 FMN 2101 G 1 
HETATM 18 C C10 FMN . . . E 4 148.016 108.533 98.245 1 77.33 ? C10 FMN 2101 G 1 
HETATM 19 C C1' FMN . . . E 4 148.972 106.73 96.841 1 70.49 ? C1' FMN 2101 G 1 
HETATM 20 C C2' FMN . . . E 4 149.247 107.393 95.501 1 66.45 ? C2' FMN 2101 G 1 
HETATM 21 O O2' FMN . . . E 4 148.184 108.343 95.285 1 62.65 ? O2' FMN 2101 G 1 
HETATM 22 C C3' FMN . . . E 4 149.413 106.349 94.385 1 56.44 ? C3' FMN 2101 G 1 
HETATM 23 O O3' FMN . . . E 4 148.262 105.496 94.379 1 58.65 ? O3' FMN 2101 G 1 
HETATM 24 C C4' FMN . . . E 4 150.675 105.489 94.576 1 55.36 ? C4' FMN 2101 G 1 
HETATM 25 O O4' FMN . . . E 4 151.784 106.239 95.053 1 51.97 ? O4' FMN 2101 G 1 
HETATM 26 C C5' FMN . . . E 4 151.105 104.841 93.273 1 58.54 ? C5' FMN 2101 G 1 
HETATM 27 O O5' FMN . . . E 4 152.14 103.875 93.384 1 54.44 ? O5' FMN 2101 G 1 
HETATM 28 P P FMN . . . E 4 153.682 104.319 93.357 1 65.39 ? P FMN 2101 G 1 
HETATM 29 O O1P FMN . . . E 4 154.319 102.996 93.77 1 68.83 ? O1P FMN 2101 G 1 
HETATM 30 O O2P FMN . . . E 4 154.101 104.882 91.98 1 63.93 ? O2P FMN 2101 G 1 
HETATM 31 O O3P FMN . . . E 4 153.728 105.358 94.461 1 61.73 ? O3P FMN 2101 G 1 
#
_model_server_stats.io_time_ms              106 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#