data_8PSP # _model_server_result.job_id baFRzg5jUsV0B2K8D7hX9g _model_server_result.datetime_utc '2024-12-02 07:19:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8psp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1901}' # _entry.id 8PSP # _exptl.entry_id 8PSP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 358.348 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-PHOSPHOPANTETHEINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PSP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PSP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1246 A CYS 1246 1_555 A SG CYS 1327 A CYS 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? covale ? covale1 B OG SER 180 B SER 180 1_555 D P24 PNS . B PNS 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? # _chem_comp.formula 'C11 H23 N2 O7 P S' _chem_comp.formula_weight 358.348 _chem_comp.id PNS _chem_comp.mon_nstd_flag . _chem_comp.name "4'-PHOSPHOPANTETHEINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 P24 PNS sing 312 n n O23 HOP1 PNS sing 313 n n P24 O25 PNS sing 314 n n P24 O26 PNS doub 315 n n P24 O27 PNS sing 316 n n O25 HOP2 PNS sing 317 n n O27 C28 PNS sing 318 n n C28 C29 PNS sing 319 n n C28 H282 PNS sing 320 n n C28 H281 PNS sing 321 n n C29 C30 PNS sing 322 n n C29 C31 PNS sing 323 n n C29 C32 PNS sing 324 n n C30 H303 PNS sing 325 n n C30 H302 PNS sing 326 n n C30 H301 PNS sing 327 n n C31 H313 PNS sing 328 n n C31 H312 PNS sing 329 n n C31 H311 PNS sing 330 n n C32 O33 PNS sing 331 n n C32 C34 PNS sing 332 n n C32 H32 PNS sing 333 n n O33 H33 PNS sing 334 n n C34 O35 PNS doub 335 n n C34 N36 PNS sing 336 n n N36 C37 PNS sing 337 n n N36 H36 PNS sing 338 n n C37 C38 PNS sing 339 n n C37 H372 PNS sing 340 n n C37 H371 PNS sing 341 n n C38 C39 PNS sing 342 n n C38 H382 PNS sing 343 n n C38 H381 PNS sing 344 n n C39 O40 PNS doub 345 n n C39 N41 PNS sing 346 n n N41 C42 PNS sing 347 n n N41 H41 PNS sing 348 n n C42 C43 PNS sing 349 n n C42 H422 PNS sing 350 n n C42 H421 PNS sing 351 n n C43 S44 PNS sing 352 n n C43 H431 PNS sing 353 n n C43 H432 PNS sing 354 n n S44 H44 PNS sing 355 n n # _atom_sites.entry_id 8PSP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PNS B 1 1901 180 PNS PSE . E 4 FMN G 1 2101 2101 FMN FMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 PNS . . . D 3 127.818 76.754 83.866 1 105.24 ? O23 PNS 1901 B 1 HETATM 2 P P24 PNS . . . D 3 126.676 77.169 82.962 1 108.64 ? P24 PNS 1901 B 1 HETATM 3 O O26 PNS . . . D 3 126.512 78.67 82.938 1 87.35 ? O26 PNS 1901 B 1 HETATM 4 O O27 PNS . . . D 3 126.956 76.66 81.448 1 105.45 ? O27 PNS 1901 B 1 HETATM 5 C C28 PNS . . . D 3 128.248 76.238 80.976 1 102.89 ? C28 PNS 1901 B 1 HETATM 6 C C29 PNS . . . D 3 128.138 75.157 79.888 1 101.18 ? C29 PNS 1901 B 1 HETATM 7 C C30 PNS . . . D 3 127.897 75.909 78.576 1 99.41 ? C30 PNS 1901 B 1 HETATM 8 C C31 PNS . . . D 3 126.991 74.154 80.15 1 97.48 ? C31 PNS 1901 B 1 HETATM 9 C C32 PNS . . . D 3 129.502 74.411 79.8 1 98.42 ? C32 PNS 1901 B 1 HETATM 10 O O33 PNS . . . D 3 129.873 73.845 81.08 1 92.31 ? O33 PNS 1901 B 1 HETATM 11 C C34 PNS . . . D 3 129.541 73.281 78.78 1 86.91 ? C34 PNS 1901 B 1 HETATM 12 O O35 PNS . . . D 3 128.646 73.044 77.992 1 89.02 ? O35 PNS 1901 B 1 HETATM 13 N N36 PNS . . . D 3 130.588 72.486 78.849 1 75.95 ? N36 PNS 1901 B 1 HETATM 14 C C37 PNS . . . D 3 130.591 71.188 78.222 1 68.94 ? C37 PNS 1901 B 1 HETATM 15 C C38 PNS . . . D 3 131.566 71.001 77.1 1 66.63 ? C38 PNS 1901 B 1 HETATM 16 C C39 PNS . . . D 3 130.76 70.467 75.964 1 79.92 ? C39 PNS 1901 B 1 HETATM 17 O O40 PNS . . . D 3 130.076 71.279 75.358 1 103.78 ? O40 PNS 1901 B 1 HETATM 18 N N41 PNS . . . D 3 130.733 69.177 75.63 1 85.29 ? N41 PNS 1901 B 1 HETATM 19 C C42 PNS . . . D 3 131.298 68.068 76.37 1 88.1 ? C42 PNS 1901 B 1 HETATM 20 C C43 PNS . . . D 3 131.007 66.726 75.698 1 93.83 ? C43 PNS 1901 B 1 HETATM 21 S S44 PNS . . . D 3 132.123 66.416 74.295 1 97.45 ? S44 PNS 1901 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 87 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 21 #