data_8PST # _model_server_result.job_id MX_NJ52bLixLLwqFTzxTcA _model_server_result.datetime_utc '2024-11-28 19:21:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pst # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8PST # _exptl.entry_id 8PST _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.216 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMP PHOSPHORAMIDATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PST _cell.length_a 41.65 _cell.length_b 76.86 _cell.length_c 124.92 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PST _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 165 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 161 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C3 _struct_conn.ptnr2_label_comp_id DC6 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id DC6 _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.76 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 N6 O9 P2' _chem_comp.formula_weight 426.216 _chem_comp.id AN2 _chem_comp.mon_nstd_flag . _chem_comp.name 'AMP PHOSPHORAMIDATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3B PB AN2 sing 13 n n N3B H3B1 AN2 sing 14 n n N3B H3B2 AN2 sing 15 n n PB O2B AN2 sing 16 n n PB O1B AN2 doub 17 n n PB O3A AN2 sing 18 n n O2B HO2B AN2 sing 19 n n O3A PA AN2 sing 20 n n PA O1A AN2 doub 21 n n PA O2A AN2 sing 22 n n PA O5' AN2 sing 23 n n O2A HO2A AN2 sing 24 n n O5' C5' AN2 sing 25 n n C5' C4' AN2 sing 26 n n C5' "H5'1" AN2 sing 27 n n C5' "H5'2" AN2 sing 28 n n C4' O4' AN2 sing 29 n n C4' C3' AN2 sing 30 n n C4' H4' AN2 sing 31 n n O4' C1' AN2 sing 32 n n C3' O3' AN2 sing 33 n n C3' C2' AN2 sing 34 n n C3' H3' AN2 sing 35 n n O3' HA AN2 sing 36 n n C2' O2' AN2 sing 37 n n C2' C1' AN2 sing 38 n n C2' H2' AN2 sing 39 n n O2' HB AN2 sing 40 n n C1' N9 AN2 sing 41 n n C1' H1' AN2 sing 42 n n N9 C8 AN2 sing 43 n y N9 C4 AN2 sing 44 n y C8 N7 AN2 doub 45 n y C8 H8 AN2 sing 46 n n N7 C5 AN2 sing 47 n y C5 C4 AN2 doub 48 n y C5 C6 AN2 sing 49 n y C4 N3 AN2 sing 50 n y N3 C2 AN2 doub 51 n y C2 N1 AN2 sing 52 n y C2 H2 AN2 sing 53 n n N1 C6 AN2 doub 54 n y C6 N6 AN2 sing 55 n n N6 H6N1 AN2 sing 56 n n N6 H6N2 AN2 sing 57 n n # _atom_sites.entry_id 8PST _atom_sites.fract_transf_matrix[1][1] 0.02401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AN2 A 1 401 401 AN2 AN2 . C 3 DC6 A 1 402 501 DC6 R60 . D 4 HOH A 1 501 100 HOH HOH . D 4 HOH A 2 502 94 HOH HOH . D 4 HOH A 3 503 107 HOH HOH . D 4 HOH A 4 504 46 HOH HOH . D 4 HOH A 5 505 25 HOH HOH . D 4 HOH A 6 506 134 HOH HOH . D 4 HOH A 7 507 121 HOH HOH . D 4 HOH A 8 508 81 HOH HOH . D 4 HOH A 9 509 42 HOH HOH . D 4 HOH A 10 510 68 HOH HOH . D 4 HOH A 11 511 95 HOH HOH . D 4 HOH A 12 512 90 HOH HOH . D 4 HOH A 13 513 44 HOH HOH . D 4 HOH A 14 514 47 HOH HOH . D 4 HOH A 15 515 92 HOH HOH . D 4 HOH A 16 516 76 HOH HOH . D 4 HOH A 17 517 27 HOH HOH . D 4 HOH A 18 518 105 HOH HOH . D 4 HOH A 19 519 115 HOH HOH . D 4 HOH A 20 520 29 HOH HOH . D 4 HOH A 21 521 85 HOH HOH . D 4 HOH A 22 522 119 HOH HOH . D 4 HOH A 23 523 14 HOH HOH . D 4 HOH A 24 524 58 HOH HOH . D 4 HOH A 25 525 26 HOH HOH . D 4 HOH A 26 526 15 HOH HOH . D 4 HOH A 27 527 128 HOH HOH . D 4 HOH A 28 528 11 HOH HOH . D 4 HOH A 29 529 52 HOH HOH . D 4 HOH A 30 530 122 HOH HOH . D 4 HOH A 31 531 70 HOH HOH . D 4 HOH A 32 532 1 HOH HOH . D 4 HOH A 33 533 20 HOH HOH . D 4 HOH A 34 534 12 HOH HOH . D 4 HOH A 35 535 5 HOH HOH . D 4 HOH A 36 536 89 HOH HOH . D 4 HOH A 37 537 111 HOH HOH . D 4 HOH A 38 538 62 HOH HOH . D 4 HOH A 39 539 93 HOH HOH . D 4 HOH A 40 540 57 HOH HOH . D 4 HOH A 41 541 10 HOH HOH . D 4 HOH A 42 542 17 HOH HOH . D 4 HOH A 43 543 67 HOH HOH . D 4 HOH A 44 544 40 HOH HOH . D 4 HOH A 45 545 112 HOH HOH . D 4 HOH A 46 546 50 HOH HOH . D 4 HOH A 47 547 19 HOH HOH . D 4 HOH A 48 548 65 HOH HOH . D 4 HOH A 49 549 124 HOH HOH . D 4 HOH A 50 550 30 HOH HOH . D 4 HOH A 51 551 77 HOH HOH . D 4 HOH A 52 552 31 HOH HOH . D 4 HOH A 53 553 8 HOH HOH . D 4 HOH A 54 554 18 HOH HOH . D 4 HOH A 55 555 96 HOH HOH . D 4 HOH A 56 556 117 HOH HOH . D 4 HOH A 57 557 84 HOH HOH . D 4 HOH A 58 558 39 HOH HOH . D 4 HOH A 59 559 59 HOH HOH . D 4 HOH A 60 560 35 HOH HOH . D 4 HOH A 61 561 99 HOH HOH . D 4 HOH A 62 562 101 HOH HOH . D 4 HOH A 63 563 32 HOH HOH . D 4 HOH A 64 564 34 HOH HOH . D 4 HOH A 65 565 60 HOH HOH . D 4 HOH A 66 566 23 HOH HOH . D 4 HOH A 67 567 63 HOH HOH . D 4 HOH A 68 568 9 HOH HOH . D 4 HOH A 69 569 133 HOH HOH . D 4 HOH A 70 570 74 HOH HOH . D 4 HOH A 71 571 7 HOH HOH . D 4 HOH A 72 572 103 HOH HOH . D 4 HOH A 73 573 120 HOH HOH . D 4 HOH A 74 574 91 HOH HOH . D 4 HOH A 75 575 6 HOH HOH . D 4 HOH A 76 576 2 HOH HOH . D 4 HOH A 77 577 51 HOH HOH . D 4 HOH A 78 578 102 HOH HOH . D 4 HOH A 79 579 16 HOH HOH . D 4 HOH A 80 580 3 HOH HOH . D 4 HOH A 81 581 22 HOH HOH . D 4 HOH A 82 582 36 HOH HOH . D 4 HOH A 83 583 4 HOH HOH . D 4 HOH A 84 584 83 HOH HOH . D 4 HOH A 85 585 88 HOH HOH . D 4 HOH A 86 586 21 HOH HOH . D 4 HOH A 87 587 97 HOH HOH . D 4 HOH A 88 588 56 HOH HOH . D 4 HOH A 89 589 28 HOH HOH . D 4 HOH A 90 590 24 HOH HOH . D 4 HOH A 91 591 116 HOH HOH . D 4 HOH A 92 592 38 HOH HOH . D 4 HOH A 93 593 123 HOH HOH . D 4 HOH A 94 594 37 HOH HOH . D 4 HOH A 95 595 61 HOH HOH . D 4 HOH A 96 596 45 HOH HOH . D 4 HOH A 97 597 126 HOH HOH . D 4 HOH A 98 598 53 HOH HOH . D 4 HOH A 99 599 33 HOH HOH . D 4 HOH A 100 600 69 HOH HOH . D 4 HOH A 101 601 43 HOH HOH . D 4 HOH A 102 602 49 HOH HOH . D 4 HOH A 103 603 48 HOH HOH . D 4 HOH A 104 604 41 HOH HOH . D 4 HOH A 105 605 13 HOH HOH . D 4 HOH A 106 606 80 HOH HOH . D 4 HOH A 107 607 137 HOH HOH . D 4 HOH A 108 608 73 HOH HOH . D 4 HOH A 109 609 86 HOH HOH . D 4 HOH A 110 610 71 HOH HOH . D 4 HOH A 111 611 54 HOH HOH . D 4 HOH A 112 612 66 HOH HOH . D 4 HOH A 113 613 108 HOH HOH . D 4 HOH A 114 614 104 HOH HOH . D 4 HOH A 115 615 132 HOH HOH . D 4 HOH A 116 616 113 HOH HOH . D 4 HOH A 117 617 79 HOH HOH . D 4 HOH A 118 618 82 HOH HOH . D 4 HOH A 119 619 136 HOH HOH . D 4 HOH A 120 620 75 HOH HOH . D 4 HOH A 121 621 110 HOH HOH . D 4 HOH A 122 622 127 HOH HOH . D 4 HOH A 123 623 131 HOH HOH . D 4 HOH A 124 624 106 HOH HOH . D 4 HOH A 125 625 64 HOH HOH . D 4 HOH A 126 626 130 HOH HOH . D 4 HOH A 127 627 98 HOH HOH . D 4 HOH A 128 628 135 HOH HOH . D 4 HOH A 129 629 72 HOH HOH . D 4 HOH A 130 630 114 HOH HOH . D 4 HOH A 131 631 129 HOH HOH . D 4 HOH A 132 632 55 HOH HOH . D 4 HOH A 133 633 118 HOH HOH . D 4 HOH A 134 634 78 HOH HOH . D 4 HOH A 135 635 125 HOH HOH . D 4 HOH A 136 636 87 HOH HOH . D 4 HOH A 137 637 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3B AN2 . . . B 2 -23.359 -8.344 17.699 1 106.4 ? N3B AN2 401 A 1 HETATM 2 P PB AN2 . . . B 2 -22.65 -9.861 17.384 1 104.77 ? PB AN2 401 A 1 HETATM 3 O O2B AN2 . . . B 2 -23.244 -10.928 18.276 1 107 -1 O2B AN2 401 A 1 HETATM 4 O O1B AN2 . . . B 2 -21.158 -9.779 17.609 1 109.04 ? O1B AN2 401 A 1 HETATM 5 O O3A AN2 . . . B 2 -22.949 -10.258 15.817 1 93.1 ? O3A AN2 401 A 1 HETATM 6 P PA AN2 . . . B 2 -21.998 -11.235 14.895 1 81.39 ? PA AN2 401 A 1 HETATM 7 O O1A AN2 . . . B 2 -21.451 -10.456 13.787 1 82.44 ? O1A AN2 401 A 1 HETATM 8 O O2A AN2 . . . B 2 -20.777 -11.692 15.559 1 78.07 -1 O2A AN2 401 A 1 HETATM 9 O O5' AN2 . . . B 2 -22.902 -12.522 14.394 1 73.94 ? O5' AN2 401 A 1 HETATM 10 C C5' AN2 . . . B 2 -24.293 -12.381 14.29 1 63.22 ? C5' AN2 401 A 1 HETATM 11 C C4' AN2 . . . B 2 -24.921 -13.693 13.919 1 53.64 ? C4' AN2 401 A 1 HETATM 12 O O4' AN2 . . . B 2 -24.117 -14.409 12.93 1 43.84 ? O4' AN2 401 A 1 HETATM 13 C C3' AN2 . . . B 2 -25.002 -14.595 15.105 1 53.74 ? C3' AN2 401 A 1 HETATM 14 O O3' AN2 . . . B 2 -26.26 -15.282 15.039 1 54.89 ? O3' AN2 401 A 1 HETATM 15 C C2' AN2 . . . B 2 -23.879 -15.551 14.953 1 49.57 ? C2' AN2 401 A 1 HETATM 16 O O2' AN2 . . . B 2 -24.173 -16.791 15.608 1 48.78 ? O2' AN2 401 A 1 HETATM 17 C C1' AN2 . . . B 2 -23.761 -15.718 13.466 1 43.47 ? C1' AN2 401 A 1 HETATM 18 N N9 AN2 . . . B 2 -22.443 -16.058 13.026 1 38.32 ? N9 AN2 401 A 1 HETATM 19 C C8 AN2 . . . B 2 -21.411 -15.263 13.212 1 39.62 ? C8 AN2 401 A 1 HETATM 20 N N7 AN2 . . . B 2 -20.297 -15.829 12.69 1 37.74 ? N7 AN2 401 A 1 HETATM 21 C C5 AN2 . . . B 2 -20.742 -17.116 12.124 1 35.8 ? C5 AN2 401 A 1 HETATM 22 C C4 AN2 . . . B 2 -22.177 -17.186 12.387 1 36.32 ? C4 AN2 401 A 1 HETATM 23 N N3 AN2 . . . B 2 -22.855 -18.251 11.987 1 38.73 ? N3 AN2 401 A 1 HETATM 24 C C2 AN2 . . . B 2 -22.246 -19.233 11.364 1 36.22 ? C2 AN2 401 A 1 HETATM 25 N N1 AN2 . . . B 2 -20.965 -19.217 11.098 1 30.98 ? N1 AN2 401 A 1 HETATM 26 C C6 AN2 . . . B 2 -20.176 -18.212 11.447 1 34.13 ? C6 AN2 401 A 1 HETATM 27 N N6 AN2 . . . B 2 -18.75 -18.22 11.15 1 31.05 ? N6 AN2 401 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #