data_8PSW
#
_model_server_result.job_id            ubvkjQ_Hu-bdc26fI8_-kw 
_model_server_result.datetime_utc      '2024-11-25 02:27:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8psw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    8PSW 
#
_exptl.entry_id    8PSW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              426.216 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'AMP PHOSPHORAMIDATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PSW 
_cell.length_a            41.47 
_cell.length_b            77.39 
_cell.length_c            127.22 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PSW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             165 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              161 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C3 
_struct_conn.ptnr2_label_comp_id            D2I 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             D2I 
_struct_conn.ptnr2_auth_seq_id              402 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.732 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C10 H16 N6 O9 P2' 
_chem_comp.formula_weight    426.216 
_chem_comp.id                AN2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'AMP PHOSPHORAMIDATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3B PB AN2 sing 13 n n 
N3B H3B1 AN2 sing 14 n n 
N3B H3B2 AN2 sing 15 n n 
PB O2B AN2 sing 16 n n 
PB O1B AN2 doub 17 n n 
PB O3A AN2 sing 18 n n 
O2B HO2B AN2 sing 19 n n 
O3A PA AN2 sing 20 n n 
PA O1A AN2 doub 21 n n 
PA O2A AN2 sing 22 n n 
PA O5' AN2 sing 23 n n 
O2A HO2A AN2 sing 24 n n 
O5' C5' AN2 sing 25 n n 
C5' C4' AN2 sing 26 n n 
C5' "H5'1" AN2 sing 27 n n 
C5' "H5'2" AN2 sing 28 n n 
C4' O4' AN2 sing 29 n n 
C4' C3' AN2 sing 30 n n 
C4' H4' AN2 sing 31 n n 
O4' C1' AN2 sing 32 n n 
C3' O3' AN2 sing 33 n n 
C3' C2' AN2 sing 34 n n 
C3' H3' AN2 sing 35 n n 
O3' HA AN2 sing 36 n n 
C2' O2' AN2 sing 37 n n 
C2' C1' AN2 sing 38 n n 
C2' H2' AN2 sing 39 n n 
O2' HB AN2 sing 40 n n 
C1' N9 AN2 sing 41 n n 
C1' H1' AN2 sing 42 n n 
N9 C8 AN2 sing 43 n y 
N9 C4 AN2 sing 44 n y 
C8 N7 AN2 doub 45 n y 
C8 H8 AN2 sing 46 n n 
N7 C5 AN2 sing 47 n y 
C5 C4 AN2 doub 48 n y 
C5 C6 AN2 sing 49 n y 
C4 N3 AN2 sing 50 n y 
N3 C2 AN2 doub 51 n y 
C2 N1 AN2 sing 52 n y 
C2 H2 AN2 sing 53 n n 
N1 C6 AN2 doub 54 n y 
C6 N6 AN2 sing 55 n n 
N6 H6N1 AN2 sing 56 n n 
N6 H6N2 AN2 sing 57 n n 
#
_atom_sites.entry_id                     8PSW 
_atom_sites.fract_transf_matrix[1][1]    0.024114 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012922 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00786 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AN2 A 1 401 401 AN2 AN2 . 
C 3 D2I A 1 402 501 D2I R67 . 
D 4 HOH A 1 501 56 HOH HOH . 
D 4 HOH A 2 502 15 HOH HOH . 
D 4 HOH A 3 503 14 HOH HOH . 
D 4 HOH A 4 504 104 HOH HOH . 
D 4 HOH A 5 505 68 HOH HOH . 
D 4 HOH A 6 506 83 HOH HOH . 
D 4 HOH A 7 507 57 HOH HOH . 
D 4 HOH A 8 508 28 HOH HOH . 
D 4 HOH A 9 509 60 HOH HOH . 
D 4 HOH A 10 510 21 HOH HOH . 
D 4 HOH A 11 511 35 HOH HOH . 
D 4 HOH A 12 512 33 HOH HOH . 
D 4 HOH A 13 513 69 HOH HOH . 
D 4 HOH A 14 514 79 HOH HOH . 
D 4 HOH A 15 515 22 HOH HOH . 
D 4 HOH A 16 516 54 HOH HOH . 
D 4 HOH A 17 517 7 HOH HOH . 
D 4 HOH A 18 518 41 HOH HOH . 
D 4 HOH A 19 519 45 HOH HOH . 
D 4 HOH A 20 520 63 HOH HOH . 
D 4 HOH A 21 521 43 HOH HOH . 
D 4 HOH A 22 522 19 HOH HOH . 
D 4 HOH A 23 523 9 HOH HOH . 
D 4 HOH A 24 524 17 HOH HOH . 
D 4 HOH A 25 525 47 HOH HOH . 
D 4 HOH A 26 526 29 HOH HOH . 
D 4 HOH A 27 527 50 HOH HOH . 
D 4 HOH A 28 528 26 HOH HOH . 
D 4 HOH A 29 529 40 HOH HOH . 
D 4 HOH A 30 530 59 HOH HOH . 
D 4 HOH A 31 531 87 HOH HOH . 
D 4 HOH A 32 532 25 HOH HOH . 
D 4 HOH A 33 533 90 HOH HOH . 
D 4 HOH A 34 534 86 HOH HOH . 
D 4 HOH A 35 535 4 HOH HOH . 
D 4 HOH A 36 536 96 HOH HOH . 
D 4 HOH A 37 537 98 HOH HOH . 
D 4 HOH A 38 538 51 HOH HOH . 
D 4 HOH A 39 539 53 HOH HOH . 
D 4 HOH A 40 540 49 HOH HOH . 
D 4 HOH A 41 541 3 HOH HOH . 
D 4 HOH A 42 542 81 HOH HOH . 
D 4 HOH A 43 543 20 HOH HOH . 
D 4 HOH A 44 544 24 HOH HOH . 
D 4 HOH A 45 545 67 HOH HOH . 
D 4 HOH A 46 546 65 HOH HOH . 
D 4 HOH A 47 547 48 HOH HOH . 
D 4 HOH A 48 548 38 HOH HOH . 
D 4 HOH A 49 549 10 HOH HOH . 
D 4 HOH A 50 550 103 HOH HOH . 
D 4 HOH A 51 551 13 HOH HOH . 
D 4 HOH A 52 552 37 HOH HOH . 
D 4 HOH A 53 553 95 HOH HOH . 
D 4 HOH A 54 554 70 HOH HOH . 
D 4 HOH A 55 555 16 HOH HOH . 
D 4 HOH A 56 556 77 HOH HOH . 
D 4 HOH A 57 557 91 HOH HOH . 
D 4 HOH A 58 558 74 HOH HOH . 
D 4 HOH A 59 559 85 HOH HOH . 
D 4 HOH A 60 560 66 HOH HOH . 
D 4 HOH A 61 561 46 HOH HOH . 
D 4 HOH A 62 562 58 HOH HOH . 
D 4 HOH A 63 563 44 HOH HOH . 
D 4 HOH A 64 564 55 HOH HOH . 
D 4 HOH A 65 565 100 HOH HOH . 
D 4 HOH A 66 566 23 HOH HOH . 
D 4 HOH A 67 567 6 HOH HOH . 
D 4 HOH A 68 568 73 HOH HOH . 
D 4 HOH A 69 569 2 HOH HOH . 
D 4 HOH A 70 570 27 HOH HOH . 
D 4 HOH A 71 571 18 HOH HOH . 
D 4 HOH A 72 572 1 HOH HOH . 
D 4 HOH A 73 573 64 HOH HOH . 
D 4 HOH A 74 574 93 HOH HOH . 
D 4 HOH A 75 575 88 HOH HOH . 
D 4 HOH A 76 576 5 HOH HOH . 
D 4 HOH A 77 577 31 HOH HOH . 
D 4 HOH A 78 578 30 HOH HOH . 
D 4 HOH A 79 579 78 HOH HOH . 
D 4 HOH A 80 580 42 HOH HOH . 
D 4 HOH A 81 581 34 HOH HOH . 
D 4 HOH A 82 582 12 HOH HOH . 
D 4 HOH A 83 583 52 HOH HOH . 
D 4 HOH A 84 584 72 HOH HOH . 
D 4 HOH A 85 585 97 HOH HOH . 
D 4 HOH A 86 586 62 HOH HOH . 
D 4 HOH A 87 587 8 HOH HOH . 
D 4 HOH A 88 588 36 HOH HOH . 
D 4 HOH A 89 589 84 HOH HOH . 
D 4 HOH A 90 590 71 HOH HOH . 
D 4 HOH A 91 591 80 HOH HOH . 
D 4 HOH A 92 592 11 HOH HOH . 
D 4 HOH A 93 593 32 HOH HOH . 
D 4 HOH A 94 594 92 HOH HOH . 
D 4 HOH A 95 595 82 HOH HOH . 
D 4 HOH A 96 596 102 HOH HOH . 
D 4 HOH A 97 597 61 HOH HOH . 
D 4 HOH A 98 598 89 HOH HOH . 
D 4 HOH A 99 599 94 HOH HOH . 
D 4 HOH A 100 600 101 HOH HOH . 
D 4 HOH A 101 601 105 HOH HOH . 
D 4 HOH A 102 602 76 HOH HOH . 
D 4 HOH A 103 603 39 HOH HOH . 
D 4 HOH A 104 604 75 HOH HOH . 
D 4 HOH A 105 605 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3B AN2 . . . B 2 -24.498 -7.056 17.01 1 83.72 ? N3B AN2 401 A 1 
HETATM 2 P PB AN2 . . . B 2 -23.561 -8.415 16.585 1 87.13 ? PB AN2 401 A 1 
HETATM 3 O O2B AN2 . . . B 2 -24.105 -9.644 17.274 1 92.46 -1 O2B AN2 401 A 1 
HETATM 4 O O1B AN2 . . . B 2 -22.124 -8.198 16.995 1 91.95 ? O1B AN2 401 A 1 
HETATM 5 O O3A AN2 . . . B 2 -23.651 -8.628 14.952 1 84.74 ? O3A AN2 401 A 1 
HETATM 6 P PA AN2 . . . B 2 -22.74 -9.692 14.087 1 76.91 ? PA AN2 401 A 1 
HETATM 7 O O1A AN2 . . . B 2 -22.2 -9.044 12.894 1 79.97 ? O1A AN2 401 A 1 
HETATM 8 O O2A AN2 . . . B 2 -21.513 -10.094 14.769 1 76 ? O2A AN2 401 A 1 
HETATM 9 O O5' AN2 . . . B 2 -23.648 -11.015 13.71 1 69.39 ? O5' AN2 401 A 1 
HETATM 10 C C5' AN2 . . . B 2 -25.01 -10.86 13.43 1 62.66 ? C5' AN2 401 A 1 
HETATM 11 C C4' AN2 . . . B 2 -25.664 -12.209 13.402 1 57.1 ? C4' AN2 401 A 1 
HETATM 12 O O4' AN2 . . . B 2 -24.972 -13.101 12.47 1 53.1 ? O4' AN2 401 A 1 
HETATM 13 C C3' AN2 . . . B 2 -25.59 -12.856 14.748 1 54.55 ? C3' AN2 401 A 1 
HETATM 14 O O3' AN2 . . . B 2 -26.83 -13.527 14.998 1 51.46 ? O3' AN2 401 A 1 
HETATM 15 C C2' AN2 . . . B 2 -24.496 -13.843 14.649 1 53.03 ? C2' AN2 401 A 1 
HETATM 16 O O2' AN2 . . . B 2 -24.727 -14.957 15.522 1 53.4 ? O2' AN2 401 A 1 
HETATM 17 C C1' AN2 . . . B 2 -24.5 -14.269 13.214 1 49.26 ? C1' AN2 401 A 1 
HETATM 18 N N9 AN2 . . . B 2 -23.19 -14.658 12.797 1 45.11 ? N9 AN2 401 A 1 
HETATM 19 C C8 AN2 . . . B 2 -22.148 -13.859 12.902 1 47.34 ? C8 AN2 401 A 1 
HETATM 20 N N7 AN2 . . . B 2 -21.046 -14.494 12.436 1 42.97 ? N7 AN2 401 A 1 
HETATM 21 C C5 AN2 . . . B 2 -21.511 -15.832 12.002 1 42.45 ? C5 AN2 401 A 1 
HETATM 22 C C4 AN2 . . . B 2 -22.943 -15.848 12.28 1 39.08 ? C4 AN2 401 A 1 
HETATM 23 N N3 AN2 . . . B 2 -23.649 -16.925 11.995 1 35.23 ? N3 AN2 401 A 1 
HETATM 24 C C2 AN2 . . . B 2 -23.076 -17.973 11.474 1 34.24 ? C2 AN2 401 A 1 
HETATM 25 N N1 AN2 . . . B 2 -21.804 -18.017 11.206 1 34.65 ? N1 AN2 401 A 1 
HETATM 26 C C6 AN2 . . . B 2 -20.988 -17.006 11.433 1 38.39 ? C6 AN2 401 A 1 
HETATM 27 N N6 AN2 . . . B 2 -19.574 -17.121 11.113 1 33.77 ? N6 AN2 401 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#