data_8PSY # _model_server_result.job_id 2ml9jLarrj8TkPj7sZhyNA _model_server_result.datetime_utc '2024-10-10 11:24:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8psy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8PSY # _exptl.entry_id 8PSY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 346.417 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '~{O}3-~{tert}-butyl ~{O}1-methyl (1~{S},3~{R})-4-oxidanylidene-1-(phenylmethyl)cyclohexane-1,3-dicarboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PSY _cell.length_a 41.9 _cell.length_b 78.33 _cell.length_c 127.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PSY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 165 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 161 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C3 _struct_conn.ptnr2_label_comp_id EI0 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id EI0 _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.742 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H26 O5' _chem_comp.formula_weight 346.417 _chem_comp.id EI0 _chem_comp.mon_nstd_flag . _chem_comp.name '~{O}3-~{tert}-butyl ~{O}1-methyl (1~{S},3~{R})-4-oxidanylidene-1-(phenylmethyl)cyclohexane-1,3-dicarboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C17 EI0 sing 128 n n C18 C17 EI0 sing 129 n n C17 C19 EI0 sing 130 n n C17 O3 EI0 sing 131 n n O3 C16 EI0 sing 132 n n C15 O EI0 sing 133 n n O C14 EI0 sing 134 n n C16 O2 EI0 doub 135 n n C16 C2 EI0 sing 136 n n C3 C2 EI0 sing 137 n n C3 C4 EI0 sing 138 n n C7 C4 EI0 sing 139 n n C7 C8 EI0 sing 140 n n C2 C1 EI0 sing 141 n n C9 C8 EI0 doub 142 n y C9 C10 EI0 sing 143 n y C14 C4 EI0 sing 144 n n C14 O1 EI0 doub 145 n n C4 C5 EI0 sing 146 n n C8 C13 EI0 sing 147 n y C10 C11 EI0 doub 148 n y C1 O4 EI0 doub 149 n n C1 C6 EI0 sing 150 n n C13 C12 EI0 doub 151 n y C11 C12 EI0 sing 152 n y C5 C6 EI0 sing 153 n n C13 H1 EI0 sing 154 n n C12 H2 EI0 sing 155 n n C15 H3 EI0 sing 156 n n C15 H4 EI0 sing 157 n n C15 H5 EI0 sing 158 n n C3 H6 EI0 sing 159 n n C3 H7 EI0 sing 160 n n C7 H8 EI0 sing 161 n n C7 H9 EI0 sing 162 n n C9 H10 EI0 sing 163 n n C10 H11 EI0 sing 164 n n C11 H12 EI0 sing 165 n n C5 H13 EI0 sing 166 n n C5 H14 EI0 sing 167 n n C6 H15 EI0 sing 168 n n C6 H16 EI0 sing 169 n n C2 H17 EI0 sing 170 n n C18 H18 EI0 sing 171 n n C18 H19 EI0 sing 172 n n C18 H20 EI0 sing 173 n n C19 H21 EI0 sing 174 n n C19 H22 EI0 sing 175 n n C19 H23 EI0 sing 176 n n C20 H24 EI0 sing 177 n n C20 H25 EI0 sing 178 n n C20 H26 EI0 sing 179 n n # _atom_sites.entry_id 8PSY _atom_sites.fract_transf_matrix[1][1] 0.023866 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007865 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AN2 A 1 401 401 AN2 AN2 . C 3 EI0 A 1 402 501 EI0 R68 . D 4 HOH A 1 501 10 HOH HOH . D 4 HOH A 2 502 5 HOH HOH . D 4 HOH A 3 503 13 HOH HOH . D 4 HOH A 4 504 14 HOH HOH . D 4 HOH A 5 505 6 HOH HOH . D 4 HOH A 6 506 12 HOH HOH . D 4 HOH A 7 507 8 HOH HOH . D 4 HOH A 8 508 1 HOH HOH . D 4 HOH A 9 509 3 HOH HOH . D 4 HOH A 10 510 17 HOH HOH . D 4 HOH A 11 511 4 HOH HOH . D 4 HOH A 12 512 2 HOH HOH . D 4 HOH A 13 513 11 HOH HOH . D 4 HOH A 14 514 16 HOH HOH . D 4 HOH A 15 515 18 HOH HOH . D 4 HOH A 16 516 19 HOH HOH . D 4 HOH A 17 517 15 HOH HOH . D 4 HOH A 18 518 9 HOH HOH . D 4 HOH A 19 519 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 EI0 . . . C 3 -22.495 -32.978 21.196 1 57.18 ? C14 EI0 402 A 1 HETATM 2 C C13 EI0 . . . C 3 -26.023 -34.565 22.545 1 72.91 ? C13 EI0 402 A 1 HETATM 3 C C12 EI0 . . . C 3 -26.147 -35.799 23.184 1 74.74 ? C12 EI0 402 A 1 HETATM 4 C C16 EI0 . . . C 3 -25.43 -29.201 20.001 1 57.56 ? C16 EI0 402 A 1 HETATM 5 C C15 EI0 . . . C 3 -20.852 -33.793 19.551 1 67.81 ? C15 EI0 402 A 1 HETATM 6 C C3 EI0 . . . C 3 -23.694 -30.892 20.599 1 48.08 ? C3 EI0 402 A 1 HETATM 7 C C4 EI0 . . . C 3 -23.78 -32.205 21.385 1 54.43 ? C4 EI0 402 A 1 HETATM 8 C C7 EI0 . . . C 3 -24.965 -33.028 20.86 1 57.62 ? C7 EI0 402 A 1 HETATM 9 C C8 EI0 . . . C 3 -25.087 -34.384 21.534 1 69.27 ? C8 EI0 402 A 1 HETATM 10 C C9 EI0 . . . C 3 -24.288 -35.475 21.166 1 74.82 ? C9 EI0 402 A 1 HETATM 11 C C10 EI0 . . . C 3 -24.403 -36.715 21.808 1 75.11 ? C10 EI0 402 A 1 HETATM 12 C C11 EI0 . . . C 3 -25.345 -36.881 22.819 1 73.06 ? C11 EI0 402 A 1 HETATM 13 C C5 EI0 . . . C 3 -23.863 -31.915 22.885 1 54.36 ? C5 EI0 402 A 1 HETATM 14 C C6 EI0 . . . C 3 -25.188 -31.256 23.23 1 60.22 ? C6 EI0 402 A 1 HETATM 15 C C1 EI0 . . . C 3 -25.438 -30.042 22.345 1 62.74 ? C1 EI0 402 A 1 HETATM 16 C C2 EI0 . . . C 3 -24.596 -29.76 21.116 1 58.54 ? C2 EI0 402 A 1 HETATM 17 C C17 EI0 . . . C 3 -25.51 -28.651 17.53 1 63.85 ? C17 EI0 402 A 1 HETATM 18 C C18 EI0 . . . C 3 -27.038 -28.725 17.421 1 54.37 ? C18 EI0 402 A 1 HETATM 19 C C19 EI0 . . . C 3 -25.092 -27.178 17.615 1 65.37 ? C19 EI0 402 A 1 HETATM 20 C C20 EI0 . . . C 3 -24.854 -29.308 16.32 1 67.75 ? C20 EI0 402 A 1 HETATM 21 O O EI0 . . . C 3 -22.215 -33.66 19.951 1 63.67 ? O EI0 402 A 1 HETATM 22 O O1 EI0 . . . C 3 -21.659 -33.057 22.084 1 56.16 ? O1 EI0 402 A 1 HETATM 23 O O4 EI0 . . . C 3 -26.336 -29.248 22.635 1 64.54 ? O4 EI0 402 A 1 HETATM 24 O O3 EI0 . . . C 3 -24.989 -29.396 18.643 1 59.87 ? O3 EI0 402 A 1 HETATM 25 O O2 EI0 . . . C 3 -26.448 -28.572 20.238 1 58.05 ? O2 EI0 402 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #